Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D00104 Erythranthe guttata HOM05D000786 ORTHO05D000779 2.2e-51 205.3 101 100.0
SGA_v2.0_scaffold376G50264 Striga asiatica HOM05D000786 ORTHO05D000779 2.0e-23 112.5 100 63.0
MSTRG.21668 Avicennia marina HOM05D000786 ORTHO05D000779 1.3e-22 109.8 101 59.4
Manes.01G225400 Manihot esculenta HOM05D000786 ORTHO05D000779 5.3e-21 104.4 88 62.5
Manes.05G001600 Manihot esculenta HOM05D000786 ORTHO05D000779 1.4e-18 96.3 91 58.2
Cpa.g.sc18.2 Carica papaya HOM05D000786 ORTHO05D000779 2.5e-18 95.5 92 58.7
Haze_05005 Corylus avellana HOM05D000786 ORTHO05D000779 2.5e-18 95.5 91 60.4
Cfa005844 Carpinus fangiana HOM05D000786 ORTHO05D000779 2.1e-17 92.4 97 56.7
CSS0023598 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D000779 3.6e-17 91.7 96 57.3
Gohir.D12G130300 Gossypium hirsutum HOM05D000786 ORTHO05D000779 4.7e-17 91.3 91 57.1
Gorai.008G141600 Gossypium raimondii HOM05D000786 ORTHO05D000779 4.7e-17 91.3 91 57.1
CiPaw.07G114700 Carya illinoinensis HOM05D000786 ORTHO05D000779 1.8e-16 89.4 89 58.4
Ciclev10022952m.g Citrus clementina HOM05D000786 ORTHO05D000779 6.7e-16 87.4 96 55.2
Gohir.A12G126900 Gossypium hirsutum HOM05D000786 ORTHO05D000779 1.1e-15 86.7 91 54.9
DCAR_002871 Daucus carota HOM05D000786 ORTHO05D000779 1.5e-15 86.3 99 54.5
Rhsim13G0006500 Rhododendron simsii HOM05D000786 ORTHO05D000779 1.5e-15 86.3 102 53.9
vmacro02416 Vaccinium macrocarpon HOM05D000786 ORTHO05D000779 2.0e-15 85.9 100 52.0
Atru.chr5.1054 Acer truncatum HOM05D000786 ORTHO05D000779 2.6e-15 85.5 94 54.3
Duzib138G1722 Durio zibethinus HOM05D000786 ORTHO05D000779 4.4e-15 84.7 91 52.7
Nitab4.5_0000116g0100 Nicotiana tabacum HOM05D000786 ORTHO05D000779 4.4e-15 84.7 101 55.4
Duzib133G0956 Durio zibethinus HOM05D000786 ORTHO05D000779 1.3e-14 83.2 88 55.7
Thecc.01G309800 Theobroma cacao HOM05D000786 ORTHO05D000779 2.8e-14 82.0 91 53.8
Nitab4.5_0004002g0020 Nicotiana tabacum HOM05D000786 ORTHO05D000779 3.7e-14 81.6 101 52.5
HanXRQChr01g0000881 Helianthus annuus HOM05D000786 ORTHO05D000779 4.8e-14 81.3 96 55.2
Peaxi162Scf00001g00286 Petunia axillaris HOM05D000786 ORTHO05D000779 4.8e-14 81.3 102 52.0
TAR365G1099 Trochodendron aralioides HOM05D000786 ORTHO05D000779 4.8e-14 81.3 95 45.3
COL.COLO4_23268 Corchorus olitorius HOM05D000786 ORTHO05D000779 1.1e-13 80.1 92 52.2
Solyc09g075650.3 Solanum lycopersicum HOM05D000786 ORTHO05D000779 1.4e-13 79.7 100 55.0
Sopen09g030450 Solanum pennellii HOM05D000786 ORTHO05D000779 1.4e-13 79.7 100 55.0
PGSC0003DMG400031801 Solanum tuberosum HOM05D000786 ORTHO05D000779 1.4e-13 79.7 100 55.0
THA.LOC104817471 Tarenaya hassleriana HOM05D000786 ORTHO05D000779 4.1e-13 78.2 91 50.5
CAN.G668.24 Capsicum annuum HOM05D000786 ORTHO05D000779 5.3e-13 77.8 100 53.0
QL12p028929 Quercus lobata HOM05D000786 ORTHO05D000779 7.0e-13 77.4 87 55.2
PGR119G0416 Punica granatum HOM05D000786 ORTHO05D000779 1.6e-12 76.3 96 50.0
A05p00450 Brassica napus HOM05D000786 ORTHO05D000779 3.5e-12 75.1 104 44.2
BolC4t21685H Brassica oleracea HOM05D000786 ORTHO05D000779 3.5e-12 75.1 104 44.2
BraA05t19043Z Brassica rapa HOM05D000786 ORTHO05D000779 3.5e-12 75.1 104 44.2
Thhalv10001686m.g Eutrema salsugineum HOM05D000786 ORTHO05D000779 4.5e-12 74.7 104 45.2
CANSAT25G1363 Cannabis sativa HOM05D000786 ORTHO05D000779 5.9e-12 74.3 97 46.4
Potri.014G123600 Populus trichocarpa HOM05D000786 ORTHO05D000779 5.9e-12 74.3 87 52.9
C04p00400 Brassica napus HOM05D000786 ORTHO05D000779 1.0e-11 73.6 99 45.5
TAR636G3362 Trochodendron aralioides HOM05D000786 ORTHO05D000779 1.0e-11 73.6 98 41.8
TWI18G0458 Tripterygium wilfordii HOM05D000786 ORTHO05D000779 1.7e-11 72.8 90 50.0
BcaB02g08768 Brassica carinata HOM05D000786 ORTHO05D000779 2.5e-10 68.9 103 43.7
TAR362G0003 Trochodendron aralioides HOM05D000786 ORTHO05D000779 3.2e-10 68.6 93 39.8
ATR0706G273 Amborella trichopoda HOM05D000786 ORTHO05D000779 4.2e-10 68.2 87 43.7
Lsat_1_v5_gn_9_25421 Lactuca sativa HOM05D000786 ORTHO05D000779 5.5e-10 67.8 96 47.9
MELO3C017928.2 Cucumis melo HOM05D000786 ORTHO05D000779 9.4e-10 67.0 86 52.3
Eucgr.H01070 Eucalyptus grandis HOM05D000786 ORTHO05D000779 9.4e-10 67.0 93 47.3
CsaV3_4G001090 Cucumis sativus L. HOM05D000786 ORTHO05D000779 1.6e-09 66.2 86 51.2
ClCG10G011210 Citrullus lanatus HOM05D000786 ORTHO05D000779 2.1e-09 65.9 91 44.0
vmacro03014 Vaccinium macrocarpon HOM05D000786 ORTHO05D000779 2.1e-09 65.9 88 47.7
Phvul.001G211500 Phaseolus vulgaris HOM05D000786 ORTHO05D000779 3.6e-09 65.1 94 42.6
Medtr7g109290 Medicago truncatula HOM05D000786 ORTHO05D000779 6.1e-09 64.3 97 37.1
Lj5g0012143 Lotus japonicus HOM05D000786 ORTHO05D000779 8.0e-09 63.9 94 45.7
Cc08_g11850 Coffea canephora HOM05D000786 ORTHO05D000779 1.4e-08 63.2 93 46.2
Glyma.10G015200 Glycine max HOM05D000786 ORTHO05D000779 1.4e-08 63.2 89 43.8
AL4G47040 Arabidopsis lyrata HOM05D000786 ORTHO05D000779 2.3e-08 62.4 91 42.9
Glyma.02G014500 Glycine max HOM05D000786 ORTHO05D000779 2.3e-08 62.4 89 42.7
Glyma.19G214700 Glycine max HOM05D000786 ORTHO05D000779 2.3e-08 62.4 98 42.9
Nn3g21623 Nelumbo nucifera HOM05D000786 ORTHO05D000779 2.3e-08 62.4 98 36.7
AT2G47480 Arabidopsis thaliana HOM05D000786 ORTHO05D000779 4.0e-08 61.6 92 44.6
Medtr1g087730 Medicago truncatula HOM05D000786 ORTHO05D000779 8.8e-08 60.5 90 42.2
Psat5g095920 Pisum sativum HOM05D000786 ORTHO05D000779 1.1e-07 60.1 100 36.0
Psat6g163480 Pisum sativum HOM05D000786 ORTHO05D000779 1.1e-07 60.1 88 44.3
TPR.G19780 Trifolium pratense HOM05D000786 ORTHO05D000779 2.0e-07 59.3 94 41.5
AT3G62640 Arabidopsis thaliana HOM05D000786 ORTHO05D000779 3.3e-07 58.5 82 42.7
BcaC07g40777 Brassica carinata HOM05D000786 ORTHO05D000779 7.5e-07 57.4 87 42.5
HPP92_025190 Vanilla planifolia HOM05D000786 ORTHO05D000779 7.5e-07 57.4 94 37.2
Carub.0005s2930 Capsella rubella HOM05D000786 ORTHO05D000779 1.3e-06 56.6 100 43.0
arahy.Tifrunner.gnm1.ann1.C0YEFK Arachis hypogaea HOM05D000786 ORTHO05D000779 1.7e-06 56.2 89 37.1
Eucgr.F03151 Eucalyptus grandis HOM05D000786 ORTHO05D000779 1.7e-06 56.2 74 39.2
BcaC07g40738 Brassica carinata HOM05D000786 ORTHO05D000779 2.2e-06 55.8 88 39.8
BolC8t51317H Brassica oleracea HOM05D000786 ORTHO05D000779 2.2e-06 55.8 88 39.8
Lalb_Chr21g0309451 Lupinus albus HOM05D000786 ORTHO05D000779 2.2e-06 55.8 89 40.4
Glyma.03G218000 Glycine max HOM05D000786 ORTHO05D000779 2.8e-06 55.5 78 44.9
MBI01_g16598_MAGBIO Magnolia biondii HOM05D000786 ORTHO05D000779 2.8e-06 55.5 81 37.0
MBI18_g24950_MAGBIO Magnolia biondii HOM05D000786 ORTHO05D000779 2.8e-06 55.5 100 39.0
Psat7g044080 Pisum sativum HOM05D000786 ORTHO05D000779 2.8e-06 55.5 42 59.5
BcaB03g16731 Brassica carinata HOM05D000786 ORTHO05D000779 4.8e-06 54.7 80 37.5
BcaB08g34861 Brassica carinata HOM05D000786 ORTHO05D000779 4.8e-06 54.7 97 37.1
A09p54500 Brassica napus HOM05D000786 ORTHO05D000779 4.8e-06 54.7 88 39.8
C08p37390 Brassica napus HOM05D000786 ORTHO05D000779 4.8e-06 54.7 88 39.8
BraA09t40863Z Brassica rapa HOM05D000786 ORTHO05D000779 4.8e-06 54.7 88 39.8
Sp5g00870 Schrenkiella parvula HOM05D000786 ORTHO05D000779 4.8e-06 54.7 104 35.6
AL5G45390 Arabidopsis lyrata HOM05D000786 ORTHO05D000779 6.3e-06 54.3 80 42.5
Nn4g25661 Nelumbo nucifera HOM05D000786 ORTHO05D000779 6.3e-06 54.3 108 33.3
Zm00001eb014190 Zea mays HOM05D000786 ORTHO05D000779 6.3e-06 54.3 73 41.1
Ah.11g049440 Amaranthus hybridus HOM05D000786 ORTHO05D000779 8.2e-06 53.9 87 40.2
Ciclev10026799m.g Citrus clementina HOM05D000786 ORTHO05D000779 8.2e-06 53.9 40 55.0
Rhsim04G0232400 Rhododendron simsii HOM05D000786 ORTHO05D000779 8.2e-06 53.9 93 37.6
SEGI_03186 Sequoiadendron giganteum HOM05D000786 ORTHO05D000779 8.2e-06 53.9 74 41.9


User provided reference genes

Program Settings