Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D00098 Erythranthe guttata HOM05D006128 ORTHO05D007466 4.2e-142 508.1 263 100.0
Atru.chr5.1049 Acer truncatum HOM05D006128 ORTHO05D007466 1.6e-72 276.9 264 60.6
Duzib138G0044 Durio zibethinus HOM05D006128 ORTHO05D007466 1.6e-72 276.9 266 62.4
Gohir.A08G040900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 5.9e-72 275.0 266 61.3
Gorai.004G050700 Gossypium raimondii HOM05D006128 ORTHO05D007466 7.7e-72 274.6 268 61.2
Gohir.D08G051000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.9e-71 272.7 268 60.8
CSS0035054 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 3.2e-70 269.2 264 62.1
CSS0018421 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 7.2e-70 268.1 264 61.7
Cc08_g11810 Coffea canephora HOM05D006128 ORTHO05D007466 1.0e-68 264.2 248 62.9
Nitab4.5_0000906g0110 Nicotiana tabacum HOM05D006128 ORTHO05D007466 1.5e-67 260.4 268 59.0
Peaxi162Scf00001g00252 Petunia axillaris HOM05D006128 ORTHO05D007466 3.4e-67 259.2 245 62.9
Manes.05G001900 Manihot esculenta HOM05D006128 ORTHO05D007466 4.4e-67 258.8 269 59.1
Ciclev10021788m.g Citrus clementina HOM05D006128 ORTHO05D007466 5.7e-67 258.5 260 59.6
FAN04G2463 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.3e-66 257.3 270 57.0
COL.COLO4_23260 Corchorus olitorius HOM05D006128 ORTHO05D007466 3.7e-66 255.8 266 58.3
FAN13G2048 Fragaria x ananassa HOM05D006128 ORTHO05D007466 3.7e-66 255.8 264 57.2
QL12p028969 Quercus lobata HOM05D006128 ORTHO05D007466 3.7e-66 255.8 251 59.0
PGSC0003DMG400009003 Solanum tuberosum HOM05D006128 ORTHO05D007466 3.7e-66 255.8 247 61.5
Nitab4.5_0000116g0090 Nicotiana tabacum HOM05D006128 ORTHO05D007466 4.9e-66 255.4 248 61.7
CAN.G69.3 Capsicum annuum HOM05D006128 ORTHO05D007466 6.3e-66 255.0 270 57.4
FvH4_5g39570 Fragaria vesca HOM05D006128 ORTHO05D007466 8.3e-66 254.6 273 57.1
Solyc01g079640.4 Solanum lycopersicum HOM05D006128 ORTHO05D007466 1.1e-65 254.2 247 60.7
Prupe.8G269800 Prunus persica HOM05D006128 ORTHO05D007466 1.8e-65 253.4 247 60.3
Sopen01g031420 Solanum pennellii HOM05D006128 ORTHO05D007466 1.8e-65 253.4 247 60.7
FAN18G2733 Fragaria x ananassa HOM05D006128 ORTHO05D007466 3.1e-65 252.7 253 58.5
Lj1A19T25 Lonicera japonica HOM05D006128 ORTHO05D007466 1.2e-64 250.8 245 61.2
FAN08G0466 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.6e-64 250.4 274 56.6
Potri.014G122900 Populus trichocarpa HOM05D006128 ORTHO05D007466 1.6e-64 250.4 267 56.2
Gorai.007G124300 Gossypium raimondii HOM05D006128 ORTHO05D007466 5.9e-64 248.4 258 57.0
Cpa.g.sc18.8 Carica papaya HOM05D006128 ORTHO05D007466 1.3e-63 247.3 247 57.9
Actinidia25836 Actinidia chinensis HOM05D006128 ORTHO05D007466 1.7e-63 246.9 262 57.6
Cfa005831 Carpinus fangiana HOM05D006128 ORTHO05D007466 5.0e-63 245.4 260 57.3
Haze_05012 Corylus avellana HOM05D006128 ORTHO05D007466 5.0e-63 245.4 260 56.9
Potri.002G198400 Populus trichocarpa HOM05D006128 ORTHO05D007466 6.6e-63 245.0 272 55.9
TWI36G0171 Tripterygium wilfordii HOM05D006128 ORTHO05D007466 3.3e-62 242.7 276 54.7
vmacro15124 Vaccinium macrocarpon HOM05D006128 ORTHO05D007466 7.3e-62 241.5 268 58.6
Manes.01G226000 Manihot esculenta HOM05D006128 ORTHO05D007466 2.1e-61 240.0 290 53.4
Hma1.2p1_1302F.1_g274310 Hydrangea macrophylla HOM05D006128 ORTHO05D007466 4.7e-61 238.8 225 63.1
Thecc.01G310500 Theobroma cacao HOM05D006128 ORTHO05D007466 8.0e-61 238.0 221 64.3
GSVIVG01028088001 Vitis vinifera HOM05D006128 ORTHO05D007466 8.0e-61 238.0 246 59.3
DCAR_002874 Daucus carota HOM05D006128 ORTHO05D007466 1.8e-60 236.9 256 55.1
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 3.0e-60 236.1 259 54.1
Sabra14G0091300 Salix brachista HOM05D006128 ORTHO05D007466 5.2e-60 235.3 277 52.0
Ca_10299_v3 Cicer arietinum L. HOM05D006128 ORTHO05D007466 6.8e-60 235.0 235 58.7
MD11G1317000 Malus domestica HOM05D006128 ORTHO05D007466 1.5e-59 233.8 246 58.1
Psat6g163320 Pisum sativum HOM05D006128 ORTHO05D007466 9.8e-59 231.1 257 56.0
TPR.G19756 Trifolium pratense HOM05D006128 ORTHO05D007466 1.7e-58 230.3 244 57.8
Rhsim01G0289400 Rhododendron simsii HOM05D006128 ORTHO05D007466 2.9e-58 229.6 304 52.0
Hund09615 Selenicereus undatus HOM05D006128 ORTHO05D007466 2.9e-58 229.6 240 58.3
CiPaw.07G115100 Carya illinoinensis HOM05D006128 ORTHO05D007466 3.7e-58 229.2 274 54.7
MBI19_g22894_MAGBIO Magnolia biondii HOM05D006128 ORTHO05D007466 4.9e-58 228.8 269 55.0
MD03G1297200 Malus domestica HOM05D006128 ORTHO05D007466 6.4e-58 228.4 246 56.5
TAR633G2533 Trochodendron aralioides HOM05D006128 ORTHO05D007466 8.3e-58 228.0 267 54.7
Lj5g0013562 Lotus japonicus HOM05D006128 ORTHO05D007466 1.1e-57 227.6 264 54.5
EL10As5g23499 Beta vulgaris HOM05D006128 ORTHO05D007466 1.4e-57 227.3 232 57.8
Medtr1g087500 Medicago truncatula HOM05D006128 ORTHO05D007466 1.4e-57 227.3 246 56.5
Nn3g21633 Nelumbo nucifera HOM05D006128 ORTHO05D007466 1.4e-57 227.3 268 54.9
Duzib133G0480 Durio zibethinus HOM05D006128 ORTHO05D007466 3.2e-57 226.1 221 62.0
Glyma.02G014100 Glycine max HOM05D006128 ORTHO05D007466 3.2e-57 226.1 220 60.9
Sed0005948 Sechium edule HOM05D006128 ORTHO05D007466 5.4e-57 225.3 266 55.6
Lalb_Chr02g0146681 Lupinus albus HOM05D006128 ORTHO05D007466 7.0e-57 224.9 271 52.8
MELO3C032866.2 Cucumis melo HOM05D006128 ORTHO05D007466 9.2e-57 224.6 270 55.6
arahy.Tifrunner.gnm1.ann1.G5X8S7 Arachis hypogaea HOM05D006128 ORTHO05D007466 2.7e-56 223.0 267 53.2
SGA_v2.0_scaffold376G50266 Striga asiatica HOM05D006128 ORTHO05D007466 7.8e-56 221.5 180 68.9
CsaV3_4G001120 Cucumis sativus L. HOM05D006128 ORTHO05D007466 1.0e-55 221.1 270 54.8
Gorai.008G141200 Gossypium raimondii HOM05D006128 ORTHO05D007466 1.7e-55 220.3 248 57.3
Dinv33101 Davidia involucrata HOM05D006128 ORTHO05D007466 3.0e-55 219.5 220 61.4
Gohir.A12G126500 Gossypium hirsutum HOM05D006128 ORTHO05D007466 3.9e-55 219.2 246 57.3
Gohir.D12G130000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 3.9e-55 219.2 246 56.9
Phvul.007G216000 Phaseolus vulgaris HOM05D006128 ORTHO05D007466 8.6e-55 218.0 224 59.4
TAR362G1032 Trochodendron aralioides HOM05D006128 ORTHO05D007466 7.3e-54 214.9 261 52.1
VMungo0720G2147 Vigna mungo HOM05D006128 ORTHO05D007466 1.6e-53 213.8 224 58.5
arahy.Tifrunner.gnm1.ann1.M4G7E6 Arachis hypogaea HOM05D006128 ORTHO05D007466 3.1e-52 209.5 295 48.5
HanXRQChr15g0464211 Helianthus annuus HOM05D006128 ORTHO05D007466 3.1e-52 209.5 251 53.4
Oeu008455.2 Olea europaea HOM05D006128 ORTHO05D007466 3.1e-52 209.5 248 54.8
unitig_52.g16838 Utricularia gibba HOM05D006128 ORTHO05D007466 3.1e-52 209.5 260 52.7
PSO357G0491 Papaver somniferum HOM05D006128 ORTHO05D007466 4.0e-52 209.1 268 50.4
PSO170G2201 Papaver somniferum HOM05D006128 ORTHO05D007466 6.8e-52 208.4 268 50.4
Aqoxy2G02213 Aquilegia oxysepala HOM05D006128 ORTHO05D007466 4.4e-51 205.7 236 55.5
THA.LOC104801298 Tarenaya hassleriana HOM05D006128 ORTHO05D007466 6.4e-50 201.8 265 51.3
ECA236G3461 Erigeron canadensis HOM05D001958 ORTHO05D001971 8.3e-50 201.4 188 62.8
PGR044G1105 Punica granatum HOM05D006128 ORTHO05D007466 3.2e-49 199.5 287 52.3
Ah.02g112110 Amaranthus hybridus HOM05D006128 ORTHO05D007466 5.4e-49 198.7 217 54.4
Sp6g02010 Schrenkiella parvula HOM05D006128 ORTHO05D007466 3.9e-47 192.6 248 51.6
Glyma.10G014800 Glycine max HOM05D006128 ORTHO05D007466 8.6e-47 191.4 220 53.2
Thhalv10028896m.g Eutrema salsugineum HOM05D006128 ORTHO05D007466 2.5e-46 189.9 204 58.8
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 9.5e-46 188.0 260 49.2
Gohir.A11G110900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 9.5e-46 188.0 222 53.2
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 2.1e-45 186.8 253 49.4
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 3.6e-45 186.0 255 50.6
CANSAT35G0097 Cannabis sativa HOM05D006128 ORTHO05D007466 1.1e-44 184.5 266 50.8
BcaB01g02428 Brassica carinata HOM05D006128 ORTHO05D007466 1.2e-43 181.0 203 58.6
AUR62011838 Chenopodium quinoa HOM05D006128 ORTHO05D007466 3.4e-43 179.5 216 54.2
AUR62024680 Chenopodium quinoa HOM05D006128 ORTHO05D007466 7.5e-43 178.3 188 58.5
Zm00001eb345660 Zea mays HOM05D006128 ORTHO05D007466 1.2e-40 171.0 187 58.8
A03p31200 Brassica napus HOM05D006128 ORTHO05D007466 2.1e-40 170.2 220 52.3
BraA03t12299Z Brassica rapa HOM05D006128 ORTHO05D007466 2.1e-40 170.2 220 52.3
BcaC01g06774 Brassica carinata HOM05D006128 ORTHO05D007466 6.0e-40 168.7 182 57.7
C03p38040 Brassica napus HOM05D006128 ORTHO05D007466 6.0e-40 168.7 182 57.7
BolC3t16089H Brassica oleracea HOM05D006128 ORTHO05D007466 6.0e-40 168.7 182 57.7
CDE11G0626 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 3.0e-39 166.4 241 50.2
CDE05G1506 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 3.9e-39 166.0 240 49.6
HPP92_016959 Vanilla planifolia HOM05D006128 ORTHO05D007466 5.1e-39 165.6 188 54.3
CSS0004097 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 1.1e-38 164.5 178 56.2
Gohir.D11G116100 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.2e-37 161.0 182 53.3
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 1.6e-37 160.6 199 52.8
ClCG10G011230 Citrullus lanatus HOM05D006128 ORTHO05D007466 1.8e-36 157.1 422 34.8
Os05g0156200 Oryza sativa ssp. japonica HOM05D006128 ORTHO05D007466 6.8e-36 155.2 175 58.3
RcHm_v2.0_Chr7g0241881 Rosa chinensis HOM05D006128 ORTHO05D007466 6.8e-36 155.2 185 53.5
ATR0706G106 Amborella trichopoda HOM05D006128 ORTHO05D007466 1.2e-35 154.5 287 42.9
Sc18g0005360 Simmondsia chinensis HOM05D006128 ORTHO05D007466 1.2e-35 154.5 202 52.5
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 5.8e-35 152.1 312 40.1
Eucgr.K03529 Eucalyptus grandis HOM05D006128 ORTHO05D007466 8.7e-31 138.3 193 50.8
MSTRG.18115 Avicennia marina HOM05D006128 ORTHO05D007466 3.3e-30 136.3 155 54.8
Lsat_1_v5_gn_8_166381 Lactuca sativa HOM05D001134 ORTHO05D001035 4.3e-30 136.0 225 46.7
Zm00001eb340800 Zea mays HOM05D006128 ORTHO05D007466 5.6e-30 135.6 187 49.2
Lalb_Chr21g0309471 Lupinus albus HOM05D006128 ORTHO05D007466 1.2e-24 117.9 248 37.9
CARHR290820 Cardamine hirsuta HOM05D006128 ORTHO05D007466 3.9e-23 112.8 131 54.2
Pp3c13_5550 Physcomitrium patens HOM05D006128 ORTHO05D007466 4.8e-21 105.9 199 41.7
AagrBONN_evm.TU.Sc2ySwM_228.1223 Anthoceros agrestis HOM05D006128 ORTHO05D007466 1.4e-20 104.4 203 40.9
Mapoly0184s0013 Marchantia polymorpha HOM05D006128 ORTHO05D007466 5.3e-20 102.4 210 41.9
SHI19763 Sapria himalayana HOM05D006128 ORTHO05D007466 5.3e-20 102.4 140 45.0
Sc18g0005490 Simmondsia chinensis HOM05D006128 ORTHO05D007466 7.1e-17 92.0 129 52.7
RcHm_v2.0_Chr7g0241891 Rosa chinensis HOM05D006128 ORTHO05D007466 1.0e-15 88.2 77 59.7
SHI19767 Sapria himalayana HOM05D006128 ORTHO05D007466 1.1e-12 78.2 76 55.3
Oeu047380.1 Olea europaea HOM05D006128 ORTHO05D007466 9.0e-12 75.1 60 61.7
A03p31210 Brassica napus HOM05D000040 ORTHO05D000267 1.5e-11 74.3 88 54.5
SEGI_18845 Sequoiadendron giganteum HOM05D006128 ORTHO05D007466 9.9e-11 71.6 104 44.2
Pp3c3_2220 Physcomitrium patens HOM05D006128 ORTHO05D007466 4.9e-10 69.3 119 47.9


User provided reference genes

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