Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 8.3e-48 193.4 96 100.0
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 8.3e-32 140.2 93 75.3
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 2.7e-30 135.2 82 76.8
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 7.8e-30 133.7 96 69.8
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 7.8e-30 133.7 74 83.8
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 7.8e-30 133.7 100 68.0
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 3.9e-29 131.3 100 67.0
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 3.9e-29 131.3 100 67.0
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 5.0e-29 131.0 77 79.2
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 8.6e-29 130.2 88 70.5
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 1.9e-28 129.0 78 76.9
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 2.5e-28 128.6 85 76.5
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 2.5e-28 128.6 76 77.6
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 2.5e-28 128.6 76 80.3
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 3.3e-28 128.3 91 68.1
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 3.3e-28 128.3 77 77.9
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 5.6e-28 127.5 77 79.2
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 5.6e-28 127.5 88 70.5
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 5.6e-28 127.5 88 70.5
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 5.6e-28 127.5 77 76.6
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 5.6e-28 127.5 80 72.5
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 7.3e-28 127.1 77 76.6
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 7.3e-28 127.1 77 76.6
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 7.3e-28 127.1 79 73.4
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 9.5e-28 126.7 77 76.6
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 1.2e-27 126.3 78 71.8
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 1.6e-27 125.9 76 76.3
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 1.6e-27 125.9 76 77.6
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 1.6e-27 125.9 84 72.6
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 1.6e-27 125.9 77 76.6
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 2.1e-27 125.6 82 73.2
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 2.1e-27 125.6 90 70.0
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 2.8e-27 125.2 94 64.9
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.8e-27 125.2 77 75.3
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 2.8e-27 125.2 80 72.5
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 3.6e-27 124.8 78 74.4
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 3.6e-27 124.8 84 71.4
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 4.7e-27 124.4 89 67.4
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 6.2e-27 124.0 77 75.3
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 6.2e-27 124.0 77 75.3
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 8.0e-27 123.6 99 65.7
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 8.0e-27 123.6 91 65.9
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 1.1e-26 123.2 73 78.1
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 1.8e-26 122.5 82 70.7
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 1.8e-26 122.5 82 70.7
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 2.3e-26 122.1 78 71.8
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 2.3e-26 122.1 77 74.0
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 2.3e-26 122.1 70 81.4
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 3.1e-26 121.7 83 67.5
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 3.1e-26 121.7 83 67.5
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 3.1e-26 121.7 71 76.1
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 3.1e-26 121.7 81 71.6
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 3.1e-26 121.7 93 65.6
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 3.1e-26 121.7 73 76.7
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 4.0e-26 121.3 73 78.1
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 4.0e-26 121.3 92 64.1
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 5.2e-26 120.9 83 67.5
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 5.2e-26 120.9 70 80.0
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 6.8e-26 120.6 93 64.5
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 6.8e-26 120.6 76 73.7
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 6.8e-26 120.6 72 77.8
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 8.9e-26 120.2 77 72.7
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 8.9e-26 120.2 71 74.6
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 8.9e-26 120.2 78 70.5
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 1.2e-25 119.8 74 73.0
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 1.5e-25 119.4 103 60.2
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 1.5e-25 119.4 85 65.9
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 1.5e-25 119.4 84 67.9
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 1.5e-25 119.4 88 70.5
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 1.5e-25 119.4 88 70.5
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 1.5e-25 119.4 70 77.1
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 2.0e-25 119.0 77 72.7
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 2.0e-25 119.0 84 70.2
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 2.6e-25 118.6 85 70.6
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 2.6e-25 118.6 69 75.4
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 3.4e-25 118.2 76 69.7
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 3.4e-25 118.2 70 78.6
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 5.8e-25 117.5 97 59.8
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 7.5e-25 117.1 73 71.2
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 7.5e-25 117.1 76 68.4
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 7.5e-25 117.1 93 62.4
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 9.8e-25 116.7 92 66.3
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 9.8e-25 116.7 81 67.9
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 9.8e-25 116.7 74 71.6
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 1.3e-24 116.3 99 58.6
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 1.3e-24 116.3 84 65.5
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.7e-24 115.9 75 72.0
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 1.7e-24 115.9 76 71.1
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 2.2e-24 115.5 89 66.3
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 2.2e-24 115.5 96 58.3
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 2.9e-24 115.2 73 71.2
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 3.7e-24 114.8 73 72.6
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 3.7e-24 114.8 94 59.6
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 3.7e-24 114.8 84 70.2
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 4.9e-24 114.4 89 65.2
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 4.9e-24 114.4 74 73.0
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 4.9e-24 114.4 75 70.7
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 6.4e-24 114.0 75 70.7
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 8.3e-24 113.6 84 65.5
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 8.3e-24 113.6 92 65.2
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 8.3e-24 113.6 89 65.2
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 1.1e-23 113.2 100 58.0
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 1.4e-23 112.8 68 77.9
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 1.4e-23 112.8 93 63.4
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 1.9e-23 112.5 75 68.0
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 2.4e-23 112.1 90 62.2
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 4.1e-23 111.3 89 64.0
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 7.1e-23 110.5 95 58.9
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 9.2e-23 110.2 69 71.0
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 9.2e-23 110.2 63 77.8
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 1.2e-22 109.8 68 75.0
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 1.2e-22 109.8 68 75.0
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 1.2e-22 109.8 90 62.2
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 1.6e-22 109.4 93 62.4
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 1.6e-22 109.4 69 73.9
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 1.6e-22 109.4 88 63.6
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 2.1e-22 109.0 64 79.7
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 2.1e-22 109.0 82 65.9
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 2.7e-22 108.6 80 68.8
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 2.7e-22 108.6 80 68.8
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 3.5e-22 108.2 76 68.4
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 4.6e-22 107.8 76 71.1
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 7.8e-22 107.1 64 76.6
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 7.8e-22 107.1 86 61.6
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 1.0e-21 106.7 67 74.6
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 1.3e-21 106.3 89 62.9
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 1.7e-21 105.9 69 71.0
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 3.9e-21 104.8 86 60.5
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 2.5e-20 102.1 66 74.2
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 3.3e-20 101.7 89 57.3
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 4.3e-20 101.3 69 71.0
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 7.3e-20 100.5 66 72.7
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.2e-19 99.8 81 63.0
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 1.6e-19 99.4 91 54.9
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.3e-18 95.5 69 66.7
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 6.8e-18 94.0 69 65.2
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 8.9e-18 93.6 69 65.2
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 2.0e-17 92.4 74 59.5
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 2.6e-17 92.0 86 59.3
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 3.4e-17 91.7 74 60.8
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 7.6e-17 90.5 85 55.3
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 7.6e-17 90.5 72 59.7
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 6.4e-16 87.4 62 64.5
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 6.4e-16 87.4 67 64.2
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 3.2e-15 85.1 55 72.7
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 4.1e-15 84.7 63 65.1
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 7.1e-15 84.0 63 61.9
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 9.2e-15 83.6 67 61.2
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 1.6e-14 82.8 64 60.9
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 5.1e-13 77.8 58 62.1
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 1.1e-12 76.6 108 42.6
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 6.2e-11 70.9 63 49.2
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 2.6e-09 65.5 41 68.3
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 2.6e-09 65.5 35 85.7
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 4.4e-09 64.7 72 45.8
GSVIVG01015950001 Vitis vinifera HOM05D004571 ORTHO05D005334 1.2e-06 56.6 34 70.6
BcaC06g34972 Brassica carinata HOM05D004571 ORTHO05D005334 2.1e-06 55.8 52 59.6


User provided reference genes

Program Settings