Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.C01259 Erythranthe guttata HOM05D005065 ORTHO05D005944 7.8e-106 387.1 192 100.0
MSTRG.25443 Avicennia marina HOM05D005065 ORTHO05D005944 1.3e-44 183.7 205 58.0
MSTRG.1526 Avicennia marina HOM05D005065 ORTHO05D005944 9.7e-40 167.5 208 55.8
SalBow7G0321 Salvia bowleyana HOM05D005065 ORTHO05D005944 3.7e-39 165.6 211 55.5
MSTRG.22454 Avicennia marina HOM05D005065 ORTHO05D005944 1.8e-38 163.3 210 52.4
Oeu029996.1 Olea europaea HOM05D005065 ORTHO05D005944 3.2e-35 152.5 212 51.9
Oeu017883.1 Olea europaea HOM05D005065 ORTHO05D005944 2.3e-33 146.4 195 49.7
Dinv15081 Davidia involucrata HOM05D005065 ORTHO05D005944 3.7e-31 139.0 179 44.7
Manes.18G101500 Manihot esculenta HOM05D005065 ORTHO05D005944 1.4e-30 137.1 191 47.6
Cfa013844 Carpinus fangiana HOM05D005065 ORTHO05D005944 3.1e-30 136.0 187 48.1
Solyc06g065340.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 2.0e-29 133.3 196 49.0
SGA_v2.0_scaffold118G32491 Striga asiatica HOM05D005065 ORTHO05D005944 2.0e-29 133.3 177 55.4
Ca_10622_v3 Cicer arietinum L. HOM05D005065 ORTHO05D005944 5.9e-29 131.7 194 43.8
Cc00_g13630 Coffea canephora HOM05D005065 ORTHO05D005944 1.0e-28 131.0 222 46.8
Lalb_Chr06g0162001 Lupinus albus HOM05D005065 ORTHO05D005944 1.0e-28 131.0 172 44.2
Haze_22517 Corylus avellana HOM05D005065 ORTHO05D005944 1.3e-28 130.6 190 46.3
Gohir.A13G121100 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.3e-28 130.6 189 46.6
PGSC0003DMG400026113 Solanum tuberosum HOM05D005065 ORTHO05D005944 1.3e-28 130.6 199 47.7
SGA_v2.0_scaffold149G36582 Striga asiatica HOM05D005065 ORTHO05D005944 1.3e-28 130.6 187 47.1
TWI60G1480 Tripterygium wilfordii HOM05D005065 ORTHO05D005944 5.0e-28 128.6 178 44.9
CiPaw.07G160300 Carya illinoinensis HOM05D005065 ORTHO05D005944 8.5e-28 127.9 185 44.9
Gohir.D13G125200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.5e-27 127.1 187 46.5
Gorai.013G140100 Gossypium raimondii HOM05D005065 ORTHO05D005944 1.5e-27 127.1 187 46.5
Thecc.08G184600 Theobroma cacao HOM05D005065 ORTHO05D005944 1.5e-27 127.1 195 45.6
Duzib177G1167 Durio zibethinus HOM05D005065 ORTHO05D005944 1.9e-27 126.7 201 43.3
Lalb_Chr21g0305721 Lupinus albus HOM05D005065 ORTHO05D005944 2.5e-27 126.3 181 48.6
Oeu021210.1 Olea europaea HOM05D005065 ORTHO05D005944 3.2e-27 125.9 203 48.3
Dinv41716 Davidia involucrata HOM05D005065 ORTHO05D005944 4.2e-27 125.6 176 45.5
CAN.G199.8 Capsicum annuum HOM05D005065 ORTHO05D005944 5.5e-27 125.2 159 50.9
Phvul.007G088700 Phaseolus vulgaris HOM05D005065 ORTHO05D005944 5.5e-27 125.2 163 47.9
CiPaw.08G058800 Carya illinoinensis HOM05D005065 ORTHO05D005944 7.2e-27 124.8 165 46.7
Actinidia02576 Actinidia chinensis HOM05D005065 ORTHO05D005944 9.4e-27 124.4 188 47.3
Gohir.A05G275300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 9.4e-27 124.4 187 46.5
Potri.013G111700 Populus trichocarpa HOM05D005065 ORTHO05D005944 9.4e-27 124.4 183 42.6
Duzib211G0507 Durio zibethinus HOM05D005065 ORTHO05D005944 1.2e-26 124.0 188 45.2
MELO3C008125.2 Cucumis melo HOM05D005065 ORTHO05D005944 1.6e-26 123.6 165 46.7
Gohir.D05G277400 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.7e-26 122.9 178 48.3
Potri.019G082866 Populus trichocarpa HOM05D005065 ORTHO05D005944 2.7e-26 122.9 162 46.3
Glyma.10G217400 Glycine max HOM05D005065 ORTHO05D005944 6.1e-26 121.7 178 45.5
Gorai.009G290400 Gossypium raimondii HOM05D005065 ORTHO05D005944 6.1e-26 121.7 178 48.3
Peaxi162Scf00268g00105 Petunia axillaris HOM05D005065 ORTHO05D005944 6.1e-26 121.7 197 45.7
Peaxi162Scf01013g00001 Petunia axillaris HOM05D005065 ORTHO05D005944 6.1e-26 121.7 198 46.5
ClCG11G008090 Citrullus lanatus HOM05D005065 ORTHO05D005944 8.0e-26 121.3 165 46.1
Sopen06g023830 Solanum pennellii HOM05D005065 ORTHO05D005944 8.0e-26 121.3 196 45.9
Hma1.2p1_0937F.1_g239030 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 1.8e-25 120.2 193 43.0
PGSC0003DMG400014033 Solanum tuberosum HOM05D005065 ORTHO05D005944 3.0e-25 119.4 210 42.4
TPR.G8826 Trifolium pratense HOM05D005065 ORTHO05D005944 3.0e-25 119.4 189 42.3
Cpa.g.sc66.33 Carica papaya HOM05D005065 ORTHO05D005944 4.0e-25 119.0 197 43.7
Rhsim06G0094100 Rhododendron simsii HOM05D005065 ORTHO05D005944 4.0e-25 119.0 180 45.0
QL02p033454 Quercus lobata HOM05D005065 ORTHO05D005944 5.2e-25 118.6 178 43.3
Lalb_Chr03g0036131 Lupinus albus HOM05D005065 ORTHO05D005944 2.0e-24 116.7 174 43.1
Glyma.20G174600 Glycine max HOM05D005065 ORTHO05D005944 2.6e-24 116.3 138 49.3
SGA_v2.0_scaffold24G10554 Striga asiatica HOM05D005065 ORTHO05D005944 2.6e-24 116.3 200 45.0
Eucgr.F02608 Eucalyptus grandis HOM05D005065 ORTHO05D005944 4.4e-24 115.5 178 41.0
Lalb_Chr02g0141751 Lupinus albus HOM05D005065 ORTHO05D005944 7.5e-24 114.8 145 45.5
VMungo0720G1099 Vigna mungo HOM05D005065 ORTHO05D005944 1.7e-23 113.6 177 46.3
Actinidia23336 Actinidia chinensis HOM05D005065 ORTHO05D005944 2.2e-23 113.2 158 44.3
PGR042G0986 Punica granatum HOM05D005065 ORTHO05D005944 2.2e-23 113.2 181 43.6
Sopen11g009740 Solanum pennellii HOM05D005065 ORTHO05D005944 1.1e-22 110.9 201 40.8
DCAR_011533 Daucus carota HOM05D005065 ORTHO05D005944 1.4e-22 110.5 162 48.8
Prupe.8G058900 Prunus persica HOM05D005065 ORTHO05D005944 1.8e-22 110.2 184 39.7
Solyc11g018710.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 1.8e-22 110.2 201 40.3
A07p30470 Brassica napus HOM05D005065 ORTHO05D005944 2.4e-22 109.8 182 45.6
BraA07t30683Z Brassica rapa HOM05D005065 ORTHO05D005944 2.4e-22 109.8 182 45.6
FAN15G3279 Fragaria x ananassa HOM05D005065 ORTHO05D005944 4.1e-22 109.0 207 40.1
Lalb_Chr01g0010191 Lupinus albus HOM05D005065 ORTHO05D005944 9.1e-22 107.8 172 43.0
Psat6g187880 Pisum sativum HOM05D005065 ORTHO05D005944 9.1e-22 107.8 190 41.6
HanXRQChr04g0107491 Helianthus annuus HOM05D005065 ORTHO05D005944 1.2e-21 107.5 177 41.8
Nn5g27677 Nelumbo nucifera HOM05D005065 ORTHO05D005944 1.2e-21 107.5 148 44.6
Manes.02G192500 Manihot esculenta HOM05D005065 ORTHO05D005944 3.5e-21 105.9 162 43.2
RcHm_v2.0_Chr6g0270871 Rosa chinensis HOM05D005065 ORTHO05D005944 3.5e-21 105.9 195 41.5
BcaB03g14918 Brassica carinata HOM05D005065 ORTHO05D005944 4.5e-21 105.5 190 43.2
Atru.chr13.1737 Acer truncatum HOM05D005065 ORTHO05D005944 5.9e-21 105.1 223 39.0
Oeu025521.1 Olea europaea HOM05D005065 ORTHO05D005944 7.7e-21 104.8 204 44.6
Ciclev10002433m.g Citrus clementina HOM05D005065 ORTHO05D005944 1.7e-20 103.6 193 41.5
BraA07t31379Z Brassica rapa HOM05D005065 ORTHO05D005944 2.9e-20 102.8 217 40.1
Hma1.2p1_0060F.1_g032900 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 2.9e-20 102.8 190 40.0
C06p35230 Brassica napus HOM05D005065 ORTHO05D005944 3.8e-20 102.4 195 41.0
Lalb_Chr19g0129461 Lupinus albus HOM05D005065 ORTHO05D005944 3.8e-20 102.4 186 40.9
MD05G1042300 Malus domestica HOM05D005065 ORTHO05D005944 3.8e-20 102.4 206 37.9
Nitab4.5_0000277g0040 Nicotiana tabacum HOM05D005065 ORTHO05D005944 3.8e-20 102.4 172 44.8
BcaB03g15639 Brassica carinata HOM05D005065 ORTHO05D005944 5.0e-20 102.1 203 36.5
Lsat_1_v5_gn_6_109661 Lactuca sativa HOM05D005065 ORTHO05D005944 6.6e-20 101.7 171 41.5
Ah.05g178140 Amaranthus hybridus HOM05D005065 ORTHO05D005944 8.6e-20 101.3 185 39.5
Lsat_1_v5_gn_1_10621 Lactuca sativa HOM05D005065 ORTHO05D005944 1.1e-19 100.9 129 46.5
CSS0016137 Camellia sinensis var. sinensis HOM05D005065 ORTHO05D005944 1.5e-19 100.5 175 40.0
AL2G31580 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 4.2e-19 99.0 183 39.3
Lj5g0001381 Lotus japonicus HOM05D005065 ORTHO05D005944 4.2e-19 99.0 184 39.1
Carub.0002s1875 Capsella rubella HOM05D005065 ORTHO05D005944 5.5e-19 98.6 193 38.9
AT1G71970 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 7.2e-19 98.2 182 40.7
BolC6t38629H Brassica oleracea HOM05D005065 ORTHO05D005944 7.2e-19 98.2 195 40.0
CARHR064790 Cardamine hirsuta HOM05D005065 ORTHO05D005944 7.2e-19 98.2 192 40.6
Rhsim11G0058500 Rhododendron simsii HOM05D005065 ORTHO05D005944 9.5e-19 97.8 178 42.7
Sp5g27040 Schrenkiella parvula HOM05D005065 ORTHO05D005944 9.5e-19 97.8 178 42.1
TAR624G0039 Trochodendron aralioides HOM05D005065 ORTHO05D005944 9.5e-19 97.8 193 37.3
A02p17610 Brassica napus HOM05D005065 ORTHO05D005944 1.2e-18 97.4 175 42.3
BraA02t06807Z Brassica rapa HOM05D005065 ORTHO05D005944 1.2e-18 97.4 175 42.3
BcaB05g24697 Brassica carinata HOM05D005065 ORTHO05D005944 2.8e-18 96.3 192 41.1
Thhalv10019856m.g Eutrema salsugineum HOM05D005065 ORTHO05D005944 2.8e-18 96.3 167 41.9
Aqoxy5G02380 Aquilegia oxysepala HOM05D005065 ORTHO05D005944 4.7e-18 95.5 170 38.2
BcaC08g46641 Brassica carinata HOM05D005065 ORTHO05D005944 8.0e-18 94.7 202 38.1
C06p46070 Brassica napus HOM05D005065 ORTHO05D005944 1.4e-17 94.0 202 38.1
HanXRQChr05g0150531 Helianthus annuus HOM05D005065 ORTHO05D005944 1.4e-17 94.0 173 41.0
THA.LOC104809741 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 1.4e-17 94.0 205 37.1
Nn1g08370 Nelumbo nucifera HOM05D005065 ORTHO05D005944 1.8e-17 93.6 195 37.4
EL10Ac1g00090 Beta vulgaris HOM05D005065 ORTHO05D005944 2.3e-17 93.2 135 43.7
BcaC03g15318 Brassica carinata HOM05D005065 ORTHO05D005944 2.3e-17 93.2 192 41.1
C02p29260 Brassica napus HOM05D005065 ORTHO05D005944 2.3e-17 93.2 192 41.1
BolC2t08977H Brassica oleracea HOM05D005065 ORTHO05D005944 2.3e-17 93.2 192 41.1
BolC6t39660H Brassica oleracea HOM05D005065 ORTHO05D005944 2.3e-17 93.2 194 39.2
Sed0021334 Sechium edule HOM05D005065 ORTHO05D005944 2.3e-17 93.2 192 38.5
THA.LOC104800116 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 5.2e-17 92.0 222 36.9
Gorai.006G130800 Gossypium raimondii HOM05D005065 ORTHO05D005944 8.9e-17 91.3 183 37.7
AT1G22680 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 1.2e-16 90.9 167 41.9
Nitab4.5_0009211g0010 Nicotiana tabacum HOM05D005065 ORTHO05D005944 1.5e-16 90.5 140 45.7
PGR102G0471 Punica granatum HOM05D005065 ORTHO05D005944 2.6e-16 89.7 183 37.7
Aa31LG4G8650 Aethionema arabicum HOM05D005065 ORTHO05D005944 5.7e-16 88.6 195 40.0
AL1G36220 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 7.5e-16 88.2 159 39.6
Sp1g20190 Schrenkiella parvula HOM05D005065 ORTHO05D005944 7.5e-16 88.2 184 37.5
Gohir.D09G113300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 9.8e-16 87.8 182 35.7
PSO782G1863 Papaver somniferum HOM05D005065 ORTHO05D005944 1.7e-15 87.0 184 39.1
Eucgr.F04121 Eucalyptus grandis HOM05D005065 ORTHO05D005944 2.8e-15 86.3 146 37.7
Gohir.A09G116200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.8e-15 86.3 188 34.6
MBI09_g14012_MAGBIO Magnolia biondii HOM05D005065 ORTHO05D005944 3.7e-15 85.9 191 36.1
Sabra13G0095100 Salix brachista HOM05D005065 ORTHO05D005944 4.9e-15 85.5 144 41.0
HPP92_009270 Vanilla planifolia HOM05D005065 ORTHO05D005944 4.9e-15 85.5 219 32.0
ATR0003G028 Amborella trichopoda HOM05D005065 ORTHO05D005944 8.3e-15 84.7 187 36.4
CARHR023050 Cardamine hirsuta HOM05D005065 ORTHO05D005944 9.2e-14 81.3 169 36.7
Sabra19G0094300 Salix brachista HOM05D005065 ORTHO05D005944 9.2e-14 81.3 144 41.7
Carub.0001s2220 Capsella rubella HOM05D005065 ORTHO05D005944 1.2e-13 80.9 160 40.0
Medtr1g096610 Medicago truncatula HOM05D005065 ORTHO05D005944 1.0e-12 77.8 181 33.1
Sc23g0001280 Simmondsia chinensis HOM05D005065 ORTHO05D005944 1.0e-12 77.8 145 39.3
ATR0820G021 Amborella trichopoda HOM05D005065 ORTHO05D005944 2.9e-12 76.3 185 33.0
CANSAT25G3119 Cannabis sativa HOM05D005065 ORTHO05D005944 2.9e-12 76.3 182 34.1
FAN24G2022 Fragaria x ananassa HOM05D005065 ORTHO05D005944 9.5e-11 71.2 162 36.4
FvH4_2g11630 Fragaria vesca HOM05D005065 ORTHO05D005944 1.6e-10 70.5 132 38.6
FAN20G1873 Fragaria x ananassa HOM05D005065 ORTHO05D005944 2.1e-10 70.1 165 37.0
Aa31LG7G6580 Aethionema arabicum HOM05D005065 ORTHO05D005944 4.7e-10 68.9 189 33.3
CDE06G2798 Ceratophyllum demersum HOM05D005065 ORTHO05D005944 8.0e-10 68.2 121 44.6
A07p38140 Brassica napus HOM05D005065 ORTHO05D005944 1.3e-07 60.8 147 38.1
Nitab4.5_0002483g0030 Nicotiana tabacum HOM05D005065 ORTHO05D005944 1.3e-07 60.8 103 41.7
Rhsim11G0058400 Rhododendron simsii HOM05D005065 ORTHO05D005944 3.7e-07 59.3 133 38.3
ECA246G5098 Erigeron canadensis HOM05D005317 ORTHO05D005146 4.9e-07 58.9 142 32.4
ECA232G3441 Erigeron canadensis HOM05D005317 ORTHO05D005146 5.4e-06 55.5 132 31.1
HPP92_005697 Vanilla planifolia HOM05D005065 ORTHO05D005944 9.2e-06 54.7 161 32.3


User provided reference genes

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