Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.C01190 Erythranthe guttata HOM05D005489 ORTHO05D006629 9.5e-74 280.0 136 100.0
SGA_v2.0_scaffold118G32436 Striga asiatica HOM05D005489 ORTHO05D006629 1.1e-69 266.5 136 90.4
SGA_v2.0_scaffold24G10504 Striga asiatica HOM05D005489 ORTHO05D006629 1.6e-68 262.7 136 88.2
Ciclev10002818m.g Citrus clementina HOM05D005489 ORTHO05D006629 1.0e-67 260.0 136 87.5
SalBow1G3581 Salvia bowleyana HOM05D005489 ORTHO05D006629 1.0e-67 260.0 134 88.8
Dinv26716 Davidia involucrata HOM05D005489 ORTHO05D006629 6.6e-67 257.3 136 88.2
Aqoxy5G02479 Aquilegia oxysepala HOM05D005489 ORTHO05D006629 2.5e-66 255.4 136 86.8
MSTRG.1486 Avicennia marina HOM05D005489 ORTHO05D006629 2.5e-66 255.4 136 83.8
Hma1.2p1_0221F.1_g093180 Hydrangea macrophylla HOM05D005489 ORTHO05D006629 3.3e-66 255.0 136 86.0
PGR044G1289 Punica granatum HOM05D005489 ORTHO05D006629 3.3e-66 255.0 136 86.8
AL1G51120 Arabidopsis lyrata HOM05D005489 ORTHO05D006629 7.3e-66 253.8 136 85.3
AT1G36980 Arabidopsis thaliana HOM05D005489 ORTHO05D006629 7.3e-66 253.8 136 85.3
COL.COLO4_32811 Corchorus olitorius HOM05D005489 ORTHO05D006629 7.3e-66 253.8 136 85.3
BcaB03g13640 Brassica carinata HOM05D005489 ORTHO05D006629 1.6e-65 252.7 136 84.6
A05p23180 Brassica napus HOM05D005489 ORTHO05D006629 1.6e-65 252.7 136 84.6
C05p36630 Brassica napus HOM05D005489 ORTHO05D006629 1.6e-65 252.7 136 84.6
BraA05t21185Z Brassica rapa HOM05D005489 ORTHO05D006629 1.6e-65 252.7 136 84.6
CARHR034780 Cardamine hirsuta HOM05D005489 ORTHO05D006629 1.6e-65 252.7 136 84.6
MELO3C022783.2 Cucumis melo HOM05D005489 ORTHO05D006629 1.6e-65 252.7 136 86.0
Manes.18G073000 Manihot esculenta HOM05D005489 ORTHO05D006629 1.6e-65 252.7 136 85.3
Thecc.08G116800 Theobroma cacao HOM05D005489 ORTHO05D006629 1.6e-65 252.7 136 85.3
Peaxi162Scf01011g00023 Petunia axillaris HOM05D005489 ORTHO05D006629 2.1e-65 252.3 135 85.2
Gohir.A01G187700 Gossypium hirsutum HOM05D005489 ORTHO05D006629 2.8e-65 251.9 136 84.6
Carub.0001s3388 Capsella rubella HOM05D005489 ORTHO05D006629 3.6e-65 251.5 136 84.6
TWI56G0906 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 3.6e-65 251.5 136 84.6
Sp1g31180 Schrenkiella parvula HOM05D005489 ORTHO05D006629 4.7e-65 251.1 136 83.8
Sed0015736 Sechium edule HOM05D005489 ORTHO05D006629 4.7e-65 251.1 136 85.3
THA.LOC104806808 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 4.7e-65 251.1 136 83.8
THA.LOC104813132 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 4.7e-65 251.1 136 83.8
Dinv27383 Davidia involucrata HOM05D005489 ORTHO05D006629 6.2e-65 250.8 136 85.3
Thhalv10005115m.g Eutrema salsugineum HOM05D005489 ORTHO05D006629 8.1e-65 250.4 136 84.6
EL10Ac1g00039 Beta vulgaris HOM05D005489 ORTHO05D006629 1.4e-64 249.6 136 83.1
Migut.N03320 Erythranthe guttata HOM05D005489 ORTHO05D006629 1.4e-64 249.6 136 84.6
PGSC0003DMG400027793 Solanum tuberosum HOM05D005489 ORTHO05D006629 1.4e-64 249.6 135 84.4
CiPaw.05G228700 Carya illinoinensis HOM05D005489 ORTHO05D006629 1.8e-64 249.2 136 83.8
TWI12G0464 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 1.8e-64 249.2 136 83.8
Atru.chr13.1318 Acer truncatum HOM05D005489 ORTHO05D006629 2.4e-64 248.8 136 84.6
Atru.chr13.1362 Acer truncatum HOM05D005489 ORTHO05D006629 2.4e-64 248.8 136 84.6
TAR197G0004 Trochodendron aralioides HOM05D005489 ORTHO05D006629 2.4e-64 248.8 136 85.3
Gohir.D02G082100 Gossypium hirsutum HOM05D005489 ORTHO05D006629 3.1e-64 248.4 136 82.4
QL12p035283 Quercus lobata HOM05D005489 ORTHO05D006629 3.1e-64 248.4 135 84.4
Gohir.A06G041000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 4.0e-64 248.1 136 82.4
Gohir.D06G041900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 4.0e-64 248.1 136 82.4
Gorai.010G047100 Gossypium raimondii HOM05D005489 ORTHO05D006629 4.0e-64 248.1 136 82.4
Gohir.A02G075000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 5.2e-64 247.7 136 81.6
Nn1g08538 Nelumbo nucifera HOM05D005489 ORTHO05D006629 6.8e-64 247.3 135 83.0
PSO017G5790 Papaver somniferum HOM05D005489 ORTHO05D006629 6.8e-64 247.3 136 83.1
PSO170G3859 Papaver somniferum HOM05D005489 ORTHO05D006629 6.8e-64 247.3 136 83.1
GSVIVG01008943001 Vitis vinifera HOM05D005489 ORTHO05D006629 6.8e-64 247.3 136 86.0
HanXRQChr11g0326271 Helianthus annuus HOM05D005489 ORTHO05D006629 1.2e-63 246.5 136 80.9
Sabra02G0070300 Salix brachista HOM05D005489 ORTHO05D006629 1.2e-63 246.5 136 83.8
TAR628G1556 Trochodendron aralioides HOM05D005489 ORTHO05D006629 1.2e-63 246.5 136 83.8
CDE06G1809 Ceratophyllum demersum HOM05D005489 ORTHO05D006629 1.5e-63 246.1 136 82.4
Duzib041G0073 Durio zibethinus HOM05D005489 ORTHO05D006629 1.5e-63 246.1 136 83.1
Lsat_1_v5_gn_4_135561 Lactuca sativa HOM05D005489 ORTHO05D006629 1.5e-63 246.1 136 82.4
Sopen11g008580 Solanum pennellii HOM05D005489 ORTHO05D006629 1.5e-63 246.1 135 83.0
Potri.002G089300 Populus trichocarpa HOM05D005489 ORTHO05D006629 2.0e-63 245.7 136 83.1
MD15G1359200 Malus domestica HOM05D005489 ORTHO05D006629 2.6e-63 245.4 136 83.1
CAN.G255.20 Capsicum annuum HOM05D005489 ORTHO05D006629 3.4e-63 245.0 135 81.5
Solyc11g013550.2 Solanum lycopersicum HOM05D005489 ORTHO05D006629 3.4e-63 245.0 135 82.2
ECA232G0625 Erigeron canadensis HOM05D005489 ORTHO05D006629 4.4e-63 244.6 132 83.3
HanXRQChr09g0260151 Helianthus annuus HOM05D005489 ORTHO05D006629 5.8e-63 244.2 135 80.7
Prupe.1G506000 Prunus persica HOM05D005489 ORTHO05D006629 5.8e-63 244.2 136 83.1
Nn5g27958 Nelumbo nucifera HOM05D005489 ORTHO05D006629 7.6e-63 243.8 133 84.2
FvH4_5g38950 Fragaria vesca HOM05D005489 ORTHO05D006629 9.9e-63 243.4 136 82.4
FAN04G1587 Fragaria x ananassa HOM05D005489 ORTHO05D006629 9.9e-63 243.4 136 82.4
FAN08G2064 Fragaria x ananassa HOM05D005489 ORTHO05D006629 9.9e-63 243.4 136 82.4
FAN18G3455 Fragaria x ananassa HOM05D005489 ORTHO05D006629 9.9e-63 243.4 136 82.4
Potri.005G171901 Populus trichocarpa HOM05D005489 ORTHO05D006629 1.3e-62 243.0 136 83.1
Duzib093G1687 Durio zibethinus HOM05D005489 ORTHO05D006629 2.2e-62 242.3 136 82.4
RcHm_v2.0_Chr7g0240921 Rosa chinensis HOM05D005489 ORTHO05D006629 3.8e-62 241.5 136 81.6
Ca_25761_v3 Cicer arietinum L. HOM05D005489 ORTHO05D006629 3.2e-61 238.4 136 80.9
arahy.Tifrunner.gnm1.ann1.204R5H Arachis hypogaea HOM05D005489 ORTHO05D006629 4.1e-61 238.0 136 78.7
arahy.Tifrunner.gnm1.ann1.64ZY3M Arachis hypogaea HOM05D005489 ORTHO05D006629 4.1e-61 238.0 136 78.7
Medtr3g073300 Medicago truncatula HOM05D005489 ORTHO05D006629 4.1e-61 238.0 136 80.1
Glyma.04G253700 Glycine max HOM05D005489 ORTHO05D006629 9.2e-61 236.9 136 79.4
TPR.G32948 Trifolium pratense HOM05D005489 ORTHO05D006629 1.2e-60 236.5 136 79.4
Aa31LG6G9070 Aethionema arabicum HOM05D005489 ORTHO05D006629 1.6e-60 236.1 124 87.1
Glyma.06G108600 Glycine max HOM05D005489 ORTHO05D006629 1.6e-60 236.1 136 79.4
Lalb_Chr08g0241711 Lupinus albus HOM05D005489 ORTHO05D006629 2.7e-60 235.3 136 78.7
Lalb_Chr11g0065701 Lupinus albus HOM05D005489 ORTHO05D006629 2.7e-60 235.3 136 78.7
Psat5g135600 Pisum sativum HOM05D005489 ORTHO05D006629 2.7e-60 235.3 136 79.4
MBI06_g01046_MAGBIO Magnolia biondii HOM05D005489 ORTHO05D006629 3.5e-60 235.0 135 80.7
Oeu032962.1 Olea europaea HOM05D005489 ORTHO05D006629 7.8e-60 233.8 136 79.4
VMungo1127G1458 Vigna mungo HOM05D005489 ORTHO05D006629 7.8e-60 233.8 136 77.9
Lj1g0000272 Lotus japonicus HOM05D005489 ORTHO05D006629 3.0e-59 231.9 136 79.4
Phvul.011G165300 Phaseolus vulgaris HOM05D005489 ORTHO05D006629 5.1e-59 231.1 136 76.5
Oeu043793.1 Olea europaea HOM05D005489 ORTHO05D006629 8.7e-59 230.3 138 76.8
Nitab4.5_0000051g0120 Nicotiana tabacum HOM05D005489 ORTHO05D006629 5.6e-58 227.6 124 84.7
Gorai.002G220400 Gossypium raimondii HOM05D005489 ORTHO05D006629 2.1e-57 225.7 124 83.1
Hund16821 Selenicereus undatus HOM05D005489 ORTHO05D006629 2.1e-57 225.7 132 80.3
Sc01g0001550 Simmondsia chinensis HOM05D005489 ORTHO05D006629 3.6e-57 224.9 124 80.6
Cc10_g10440 Coffea canephora HOM05D005489 ORTHO05D006629 4.7e-57 224.6 124 87.1
Gohir.D01G181900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 4.7e-57 224.6 124 83.1
Rhsim06G0109100 Rhododendron simsii HOM05D005489 ORTHO05D006629 4.7e-57 224.6 124 82.3
FAN13G3020 Fragaria x ananassa HOM05D005489 ORTHO05D006629 9.0e-56 220.3 131 77.9
Nitab4.5_0002332g0020 Nicotiana tabacum HOM05D005489 ORTHO05D006629 9.0e-56 220.3 119 84.9
DCAR_014792 Daucus carota HOM05D005489 ORTHO05D006629 3.4e-55 218.4 124 77.4
unitig_747.g21477 Utricularia gibba HOM05D003597 ORTHO05D004420 2.9e-54 215.3 206 53.4
HPP92_002297 Vanilla planifolia HOM05D005489 ORTHO05D006629 1.4e-53 213.0 130 74.6
Zm00001eb244520 Zea mays HOM05D005489 ORTHO05D006629 1.4e-53 213.0 141 68.1
HPP92_005944 Vanilla planifolia HOM05D005489 ORTHO05D006629 3.2e-53 211.8 130 76.2
Actinidia29431 Actinidia chinensis HOM05D005489 ORTHO05D006629 1.2e-52 209.9 133 71.4
Os02g0566900 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 1.6e-52 209.5 131 70.2
Zm00001eb100550 Zea mays HOM05D005489 ORTHO05D006629 3.5e-52 208.4 138 71.0
BolC5t32398H Brassica oleracea HOM05D005489 ORTHO05D006629 6.0e-52 207.6 120 80.8
Os09g0453000 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 6.6e-51 204.1 138 69.6
AagrBONN_evm.TU.Sc2ySwM_344.2049 Anthoceros agrestis HOM05D005489 ORTHO05D006629 7.3e-50 200.7 131 67.2
BcaC05g27681 Brassica carinata HOM05D005489 ORTHO05D006629 6.2e-49 197.6 120 75.8
SEGI_34511 Sequoiadendron giganteum HOM05D005489 ORTHO05D006629 1.4e-48 196.4 136 67.6
SMO116G0262 Selaginella moellendorffii HOM05D005489 ORTHO05D006629 1.8e-48 196.1 131 67.2
Pp3c2_28270 Physcomitrium patens HOM05D005489 ORTHO05D006629 1.6e-44 183.0 136 59.6
Pp3c1_10200 Physcomitrium patens HOM05D005489 ORTHO05D006629 1.8e-43 179.5 134 59.0
Mapoly0004s0020 Marchantia polymorpha HOM05D005489 ORTHO05D006629 5.1e-43 177.9 153 58.2
CBR_g30829 Chara braunii HOM05D005489 ORTHO05D006629 2.4e-40 169.1 128 60.2
Gorai.005G092000 Gossypium raimondii HOM05D005489 ORTHO05D006629 4.0e-40 168.3 92 84.8
Sabra05G0129400 Salix brachista HOM05D005489 ORTHO05D006629 1.7e-38 162.9 125 67.2
CANSAT25G2554 Cannabis sativa HOM05D005489 ORTHO05D006629 5.1e-35 151.4 92 75.0
Haze_00523 Corylus avellana HOM05D005489 ORTHO05D006629 5.1e-35 151.4 76 86.8
Cfa015959 Carpinus fangiana HOM05D005489 ORTHO05D006629 5.6e-34 147.9 74 86.5
BcaC05g27682 Brassica carinata HOM05D005489 ORTHO05D006629 2.1e-33 146.0 74 82.4
C05p36640 Brassica napus HOM05D005489 ORTHO05D006629 2.1e-33 146.0 74 82.4
ClCG03G009110 Citrullus lanatus HOM05D005489 ORTHO05D006629 3.7e-33 145.2 74 83.8
CsaV3_5G023520 Cucumis sativus L. HOM05D005489 ORTHO05D006629 3.7e-33 145.2 74 83.8
TAR127G0005 Trochodendron aralioides HOM05D005489 ORTHO05D006629 6.2e-33 144.4 75 82.7
DCAR_023128 Daucus carota HOM05D005489 ORTHO05D006629 5.3e-32 141.4 75 77.3
ATR0121G008 Amborella trichopoda HOM05D005489 ORTHO05D006629 6.9e-32 141.0 74 81.1
Nn2g15248 Nelumbo nucifera HOM05D005489 ORTHO05D006629 3.8e-30 135.2 73 79.5
Oeu050268.1 Olea europaea HOM05D005489 ORTHO05D006629 1.6e-28 129.8 76 77.6
Cre01.g042950 Chlamydomonas reinhardtii HOM05D005489 ORTHO05D006629 8.7e-27 124.0 131 44.3
AUR62004694 Chenopodium quinoa HOM05D005489 ORTHO05D006629 1.9e-26 122.9 140 50.0
Sopen11g008620 Solanum pennellii HOM05D000147 ORTHO05D004360 1.7e-22 109.8 72 73.6
PRCOL_00003843 Prasinoderma coloniale HOM05D005489 ORTHO05D006629 4.3e-18 95.1 117 43.6
SalBow7G4082 Salvia bowleyana HOM05D005489 ORTHO05D006629 8.2e-17 90.9 168 38.1
ClCG03G009140 Citrullus lanatus HOM05D005489 ORTHO05D006629 1.4e-16 90.1 50 90.0
Eucgr.F04378 Eucalyptus grandis HOM05D005489 ORTHO05D006629 1.0e-14 84.0 47 74.5
SalBow7G1125 Salvia bowleyana HOM05D002998 ORTHO05D006629 8.8e-11 70.9 35 77.1
Solyc11g013660.1 Solanum lycopersicum HOM05D005489 ORTHO05D006629 1.5e-10 70.1 70 55.7
PRCOL_00003098 Prasinoderma coloniale HOM05D001685 ORTHO05D007488 2.6e-07 59.3 137 32.8
Os08g0469200 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 4.5e-07 58.5 67 47.8


User provided reference genes

Program Settings