Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.C01145 Erythranthe guttata HOM05D005174 ORTHO05D006784 1.1e-167 593.2 305 100.0
SGA_v2.0_scaffold52G18977 Striga asiatica HOM05D005174 ORTHO05D006784 5.4e-125 451.4 313 75.7
MSTRG.1457 Avicennia marina HOM05D005174 ORTHO05D006784 7.7e-124 447.6 321 75.7
SalBow7G2597 Salvia bowleyana HOM05D005174 ORTHO05D006784 1.4e-120 436.8 361 67.3
Dinv40398 Davidia involucrata HOM05D005174 ORTHO05D006784 6.3e-118 427.9 321 69.8
PGSC0003DMG400017574 Solanum tuberosum HOM05D005174 ORTHO05D006784 1.2e-111 407.1 321 67.6
Oeu047941.1 Olea europaea HOM05D005174 ORTHO05D006784 8.3e-110 401.0 329 68.4
Nitab4.5_0008211g0030 Nicotiana tabacum HOM05D005174 ORTHO05D006784 1.4e-109 400.2 333 64.9
Sopen06g020560 Solanum pennellii HOM05D005174 ORTHO05D006784 4.1e-109 398.7 321 66.4
Solyc06g060420.3 Solanum lycopersicum HOM05D005174 ORTHO05D006784 7.0e-109 397.9 321 66.7
Glyma.06G111200 Glycine max HOM05D005174 ORTHO05D006784 1.7e-107 393.3 324 66.7
Lj5g0013947 Lotus japonicus HOM05D005174 ORTHO05D006784 8.6e-107 391.0 322 66.8
CSS0048949 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 3.3e-106 389.0 320 65.6
Cc01_g07610 Coffea canephora HOM05D005174 ORTHO05D006784 2.1e-105 386.3 319 65.5
CSS0047682 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 4.7e-105 385.2 320 65.3
COL.COLO4_12205 Corchorus olitorius HOM05D005174 ORTHO05D006784 1.0e-104 384.0 323 64.7
Eucgr.H00450 Eucalyptus grandis HOM05D005174 ORTHO05D006784 2.3e-104 382.9 323 63.8
Gorai.005G090400 Gossypium raimondii HOM05D005174 ORTHO05D006784 2.3e-104 382.9 322 64.3
TAR381G1686 Trochodendron aralioides HOM05D005174 ORTHO05D006784 2.3e-104 382.9 319 64.6
Lj1g0014313 Lotus japonicus HOM05D005174 ORTHO05D006784 5.2e-104 381.7 322 66.1
ECA232G2439 Erigeron canadensis HOM05D005174 ORTHO05D006784 2.6e-103 379.4 317 63.7
Ca_13578_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 4.4e-103 378.6 322 65.8
HanXRQChr02g0041151 Helianthus annuus HOM05D005174 ORTHO05D006784 7.5e-103 377.9 316 64.2
VMungo1309G0682 Vigna mungo HOM05D005174 ORTHO05D006784 2.2e-102 376.3 320 64.4
GSVIVG01008896001 Vitis vinifera HOM05D005174 ORTHO05D006784 2.9e-102 375.9 325 64.0
Lalb_Chr08g0241531 Lupinus albus HOM05D005174 ORTHO05D006784 8.3e-102 374.4 320 64.1
Psat5g120840 Pisum sativum HOM05D005174 ORTHO05D006784 1.1e-101 374.0 322 64.9
Phvul.009G123200 Phaseolus vulgaris HOM05D005174 ORTHO05D006784 2.4e-101 372.9 320 64.4
Prupe.1G501000 Prunus persica HOM05D005174 ORTHO05D006784 4.1e-101 372.1 321 63.6
Peaxi162Scf00051g00623 Petunia axillaris HOM05D005174 ORTHO05D006784 9.2e-101 370.9 313 65.8
CANSAT25G0921 Cannabis sativa HOM05D005174 ORTHO05D006784 1.2e-100 370.5 323 62.5
Thecc.08G122000 Theobroma cacao HOM05D005174 ORTHO05D006784 1.6e-100 370.2 325 62.8
arahy.Tifrunner.gnm1.ann1.3YB7R6 Arachis hypogaea HOM05D005174 ORTHO05D006784 3.5e-100 369.0 320 64.7
PGR044G1014 Punica granatum HOM05D005174 ORTHO05D006784 3.5e-100 369.0 323 61.9
Duzib093G0119 Durio zibethinus HOM05D005174 ORTHO05D006784 4.6e-100 368.6 324 62.7
Potri.005G175900 Populus trichocarpa HOM05D005174 ORTHO05D006784 1.0e-99 367.5 321 62.0
Gohir.A05G233700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.7e-99 366.7 321 62.9
Lsat_1_v5_gn_4_135460 Lactuca sativa HOM05D005174 ORTHO05D006784 2.3e-99 366.3 336 59.2
Gorai.009G244400 Gossypium raimondii HOM05D005174 ORTHO05D006784 3.9e-99 365.5 321 62.3
Gohir.D05G236100 Gossypium hirsutum HOM05D005174 ORTHO05D006784 8.6e-99 364.4 321 62.3
Gohir.D02G080900 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.1e-98 364.0 322 62.4
Lalb_Chr17g0343851 Lupinus albus HOM05D005174 ORTHO05D006784 2.5e-98 362.8 330 60.9
Duzib116G0013 Durio zibethinus HOM05D005174 ORTHO05D006784 3.3e-98 362.5 336 58.9
MD15G1352500 Malus domestica HOM05D005174 ORTHO05D006784 3.3e-98 362.5 319 61.4
Medtr3g072620 Medicago truncatula HOM05D005174 ORTHO05D006784 3.3e-98 362.5 320 64.4
Manes.02G161600 Manihot esculenta HOM05D005174 ORTHO05D006784 5.6e-98 361.7 324 61.4
Eucgr.L02995 Eucalyptus grandis HOM05D005174 ORTHO05D006784 9.5e-98 360.9 303 64.4
Cpa.g.sc36.39 Carica papaya HOM05D005174 ORTHO05D006784 2.1e-97 359.8 305 63.9
AL1G52500 Arabidopsis lyrata HOM05D005174 ORTHO05D006784 2.8e-97 359.4 310 61.0
TWI56G0960 Tripterygium wilfordii HOM05D005174 ORTHO05D006784 3.6e-97 359.0 314 62.1
Sp1g33700 Schrenkiella parvula HOM05D005174 ORTHO05D006784 4.7e-97 358.6 308 62.0
Carub.0001s3538 Capsella rubella HOM05D005174 ORTHO05D006784 6.2e-97 358.2 312 61.5
CARHR036100 Cardamine hirsuta HOM05D005174 ORTHO05D006784 6.2e-97 358.2 303 62.0
Thhalv10004660m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 8.1e-97 357.8 307 60.9
AT1G44835 Arabidopsis thaliana HOM05D005174 ORTHO05D006784 1.8e-96 356.7 311 60.5
Glyma.14G147200 Glycine max HOM05D005174 ORTHO05D006784 5.2e-96 355.1 321 60.4
Thhalv10021201m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 6.8e-96 354.8 307 60.6
Nn5g28198 Nelumbo nucifera HOM05D005174 ORTHO05D006784 6.8e-96 354.8 314 60.5
Hund24749 Selenicereus undatus HOM05D005174 ORTHO05D006784 1.5e-95 353.6 328 58.8
THA.LOC104806814 Tarenaya hassleriana HOM05D005174 ORTHO05D006784 1.5e-95 353.6 317 60.6
TPR.G22992 Trifolium pratense HOM05D005174 ORTHO05D006784 2.6e-95 352.8 326 61.3
BcaB04g17581 Brassica carinata HOM05D005174 ORTHO05D006784 3.4e-95 352.4 310 61.3
Ciclev10001813m.g Citrus clementina HOM05D005174 ORTHO05D006784 3.4e-95 352.4 318 61.0
PSO782G4297 Papaver somniferum HOM05D005174 ORTHO05D006784 3.4e-95 352.4 322 59.3
RcHm_v2.0_Chr6g0295461 Rosa chinensis HOM05D005174 ORTHO05D006784 3.4e-95 352.4 314 61.5
Aa31LG6G9210 Aethionema arabicum HOM05D005174 ORTHO05D006784 9.8e-95 350.9 313 59.4
QL09p035644 Quercus lobata HOM05D005174 ORTHO05D006784 1.7e-94 350.1 312 61.9
FvH4_2g26610 Fragaria vesca HOM05D005174 ORTHO05D006784 4.9e-94 348.6 316 61.4
FAN24G0526 Fragaria x ananassa HOM05D005174 ORTHO05D006784 4.9e-94 348.6 316 61.4
BraA08t32633Z Brassica rapa HOM05D005174 ORTHO05D006784 6.4e-94 348.2 306 60.5
PSO170G4538 Papaver somniferum HOM05D005174 ORTHO05D006784 6.4e-94 348.2 322 59.0
A08p06300 Brassica napus HOM05D005174 ORTHO05D006784 8.3e-94 347.8 306 60.1
CiPaw.05G223800 Carya illinoinensis HOM05D005174 ORTHO05D006784 8.3e-94 347.8 305 61.0
Sed0012589 Sechium edule HOM05D005174 ORTHO05D006784 2.4e-93 346.3 315 58.4
BcaC08g42881 Brassica carinata HOM05D005174 ORTHO05D006784 3.2e-93 345.9 309 60.5
ClCG11G015640 Citrullus lanatus HOM05D005174 ORTHO05D006784 5.4e-93 345.1 315 59.4
CsaV3_4G028370 Cucumis sativus L. HOM05D005174 ORTHO05D006784 5.4e-93 345.1 315 59.7
A10p07300 Brassica napus HOM05D005174 ORTHO05D006784 9.2e-93 344.4 311 61.1
BraSC36t46091Z Brassica rapa HOM05D005174 ORTHO05D006784 9.2e-93 344.4 311 61.1
Sc01g0001320 Simmondsia chinensis HOM05D005174 ORTHO05D006784 9.2e-93 344.4 315 59.7
Aqoxy6G00176 Aquilegia oxysepala HOM05D005174 ORTHO05D006784 1.6e-92 343.6 322 58.1
BcaC07g37283 Brassica carinata HOM05D005174 ORTHO05D006784 1.6e-92 343.6 306 59.2
C08p07120 Brassica napus HOM05D005174 ORTHO05D006784 1.6e-92 343.6 306 59.2
BolC8t47557H Brassica oleracea HOM05D005174 ORTHO05D006784 1.6e-92 343.6 306 59.2
BolC6t35233H Brassica oleracea HOM05D005174 ORTHO05D006784 3.5e-92 342.4 311 60.1
C06p00970 Brassica napus HOM05D005174 ORTHO05D006784 6.0e-92 341.7 311 60.1
arahy.Tifrunner.gnm1.ann1.Z8FB5F Arachis hypogaea HOM05D005174 ORTHO05D006784 1.7e-91 340.1 375 54.9
Cfa015995 Carpinus fangiana HOM05D005174 ORTHO05D006784 1.7e-91 340.1 310 60.3
Nitab4.5_0000633g0140 Nicotiana tabacum HOM05D005174 ORTHO05D006784 9.5e-90 334.3 319 59.2
vmacro00818 Vaccinium macrocarpon HOM05D005174 ORTHO05D006784 1.2e-89 334.0 283 65.0
CAN.G1396.5 Capsicum annuum HOM05D005174 ORTHO05D006784 2.1e-89 333.2 255 69.0
AUR62042433 Chenopodium quinoa HOM05D005174 ORTHO05D006784 2.8e-89 332.8 326 55.2
FAN20G1758 Fragaria x ananassa HOM05D005174 ORTHO05D006784 4.7e-89 332.0 319 58.9
Psat2g085920 Pisum sativum HOM05D005174 ORTHO05D006784 1.8e-88 330.1 372 51.9
ATR0193G024 Amborella trichopoda HOM05D005174 ORTHO05D006784 1.5e-87 327.0 317 56.5
AUR62018164 Chenopodium quinoa HOM05D005174 ORTHO05D006784 3.8e-86 322.4 341 54.3
Actinidia29457 Actinidia chinensis HOM05D005174 ORTHO05D006784 1.1e-85 320.9 320 58.8
Sabra05G0132500 Salix brachista HOM05D005174 ORTHO05D006784 1.1e-85 320.9 378 51.9
Os02g0767700 Oryza sativa ssp. japonica HOM05D005174 ORTHO05D006784 2.1e-84 316.6 306 55.9
RhsimUnG0094500 Rhododendron simsii HOM05D005174 ORTHO05D006784 7.8e-84 314.7 266 65.8
Zm00001eb193560 Zea mays HOM05D005174 ORTHO05D006784 1.3e-83 313.9 304 57.6
CDE05G2191 Ceratophyllum demersum HOM05D005174 ORTHO05D006784 8.6e-83 311.2 314 52.5
EL10Ac2g03105 Beta vulgaris HOM05D005174 ORTHO05D006784 1.1e-82 310.8 306 57.5
Sc01g0001280 Simmondsia chinensis HOM05D005174 ORTHO05D006784 2.5e-82 309.7 269 61.3
DCAR_017401 Daucus carota HOM05D005174 ORTHO05D006784 1.6e-81 307.0 202 76.2
Atru.chr13.1416 Acer truncatum HOM05D005174 ORTHO05D006784 1.1e-80 304.3 288 58.0
unitig_82.g26987 Utricularia gibba HOM05D005174 ORTHO05D006784 2.9e-78 296.2 295 55.9
FAN15G0922 Fragaria x ananassa HOM05D005174 ORTHO05D006784 5.1e-75 285.4 350 50.6
FAN27G1282 Fragaria x ananassa HOM05D005174 ORTHO05D006784 5.3e-72 275.4 326 50.9
MBI03_g33021_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 3.0e-67 259.6 289 53.3
MELO3C032634.2 Cucumis melo HOM05D005174 ORTHO05D006784 2.8e-65 253.1 308 50.3
Gohir.A02G073700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.5e-63 247.3 313 50.5
Pp3c18_22250 Physcomitrium patens HOM05D005174 ORTHO05D006784 2.0e-63 246.9 302 47.7
Mapoly0010s0001 Marchantia polymorpha HOM05D005174 ORTHO05D006784 6.4e-62 241.9 310 47.7
Ah.10g032020 Amaranthus hybridus HOM05D005174 ORTHO05D006784 2.1e-60 236.9 325 46.5
SEGI_02373 Sequoiadendron giganteum HOM05D005174 ORTHO05D006784 1.3e-59 234.2 270 49.6
HPP92_001042 Vanilla planifolia HOM05D005174 ORTHO05D006784 1.1e-50 204.5 320 40.9
Haze_00470 Corylus avellana HOM05D005174 ORTHO05D006784 2.5e-45 186.8 112 84.8
Cre10.g425950 Chlamydomonas reinhardtii HOM05D005174 ORTHO05D006784 4.6e-44 182.6 178 50.6
PRCOL_00005180 Prasinoderma coloniale HOM05D005174 ORTHO05D006784 1.7e-41 174.1 179 48.6
Lj7A337T25 Lonicera japonica HOM05D005174 ORTHO05D006784 2.8e-41 173.3 179 57.0
Hund16845 Selenicereus undatus HOM05D005174 ORTHO05D006784 1.0e-38 164.9 105 77.1
MD08G1166300 Malus domestica HOM05D005174 ORTHO05D006784 1.3e-38 164.5 110 75.5
FAN20G0512 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.8e-35 154.1 263 40.7
Sabra15G0076900 Salix brachista HOM05D000453 ORTHO05D000387 6.7e-35 152.1 154 57.1
SMO200G0142 Selaginella moellendorffii HOM05D000188 ORTHO05D007139 1.8e-27 127.5 218 41.7
Ca_03754_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 2.9e-22 110.2 99 57.6
Haze_00471 Corylus avellana HOM05D005174 ORTHO05D006784 4.2e-21 106.3 190 41.6
Sabra02G0067100 Salix brachista HOM05D005174 ORTHO05D006784 2.7e-15 87.0 79 59.5
Glyma.04G251502 Glycine max HOM05D005174 ORTHO05D006784 5.0e-14 82.8 115 47.0
Duzib041G0272 Durio zibethinus HOM05D005174 ORTHO05D015215 6.5e-14 82.4 49 85.7
arahy.Tifrunner.gnm1.ann1.032V6W Arachis hypogaea HOM05D005174 ORTHO05D015215 1.9e-13 80.9 46 87.0
arahy.Tifrunner.gnm1.ann1.PAU1NR Arachis hypogaea HOM05D005174 ORTHO05D015215 1.9e-13 80.9 46 87.0
arahy.Tifrunner.gnm1.ann1.RE5YQ2 Arachis hypogaea HOM05D005174 ORTHO05D015215 1.9e-13 80.9 46 87.0
Potri.002G085700 Populus trichocarpa HOM05D005174 ORTHO05D050453 4.2e-13 79.7 54 72.2
arahy.Tifrunner.gnm1.ann1.S56SQA Arachis hypogaea HOM05D005174 ORTHO05D015215 1.6e-12 77.8 67 59.7
arahy.Tifrunner.gnm1.ann1.W2W6PZ Arachis hypogaea HOM05D005174 ORTHO05D015215 3.6e-12 76.6 45 84.4
Ca_03755_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 3.6e-12 76.6 106 47.2
SEGI_30371 Sequoiadendron giganteum HOM05D005174 ORTHO05D050453 1.0e-11 75.1 53 66.0
Cfa010764 Carpinus fangiana HOM05D005174 ORTHO05D006784 9.8e-10 68.6 101 41.6
Oeu059427.1 Olea europaea HOM05D005174 ORTHO05D006784 6.3e-09 65.9 51 68.6
SGA_v2.0_scaffold24G10473 Striga asiatica HOM05D021410 ORTHO05D401290 7.0e-08 62.4 36 77.8
arahy.Tifrunner.gnm1.ann1.9F26EH Arachis hypogaea HOM05D005174 ORTHO05D015215 5.9e-07 59.3 51 64.7


User provided reference genes

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