Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.C01081 Erythranthe guttata HOM05D002282 ORTHO05D002403 1.9e-125 452.6 241 100.0
SalBow1G0696 Salvia bowleyana HOM05D002282 ORTHO05D002403 4.0e-83 312.0 247 68.8
MSTRG.1400 Avicennia marina HOM05D002282 ORTHO05D002403 5.2e-83 311.6 246 71.1
SGA_v2.0_scaffold52G18905 Striga asiatica HOM05D002282 ORTHO05D002403 8.6e-78 294.3 251 70.9
Oeu045971.1 Olea europaea HOM05D002282 ORTHO05D002403 1.2e-66 257.3 204 71.6
Sopen03g035310 Solanum pennellii HOM05D002282 ORTHO05D002403 3.9e-62 242.3 243 58.4
Cc04_g04050 Coffea canephora HOM05D002282 ORTHO05D002403 1.9e-61 240.0 247 59.9
CAN.G407.112 Capsicum annuum HOM05D002282 ORTHO05D002403 2.5e-61 239.6 243 57.2
PGSC0003DMG400000602 Solanum tuberosum HOM05D002282 ORTHO05D002403 1.6e-60 236.9 242 57.4
Solyc03g116380.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 3.6e-60 235.7 243 57.2
Peaxi162Scf00274g00850 Petunia axillaris HOM05D002282 ORTHO05D002403 8.1e-60 234.6 245 54.7
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 1.4e-59 233.8 246 56.1
Nitab4.5_0006574g0100 Nicotiana tabacum HOM05D002282 ORTHO05D002403 3.1e-59 232.6 246 55.7
Potri.003G060900 Populus trichocarpa HOM05D002282 ORTHO05D002403 1.2e-58 230.7 210 64.3
TWI18G0202 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 5.8e-58 228.4 237 57.0
Actinidia15798 Actinidia chinensis HOM05D002282 ORTHO05D002403 3.8e-57 225.7 245 54.7
Potri.001G173300 Populus trichocarpa HOM05D002282 ORTHO05D002403 1.1e-56 224.2 249 54.6
Sabra01G0138500 Salix brachista HOM05D002282 ORTHO05D002403 1.4e-56 223.8 223 57.8
Cpa.g.sc336.4 Carica papaya HOM05D002282 ORTHO05D002403 5.5e-56 221.9 243 56.4
Dinv30569 Davidia involucrata HOM05D002282 ORTHO05D002403 5.5e-56 221.9 247 55.1
TAR383G0492 Trochodendron aralioides HOM05D002282 ORTHO05D002403 2.1e-55 219.9 195 63.1
Nn2g11949 Nelumbo nucifera HOM05D002282 ORTHO05D002403 2.7e-55 219.5 246 56.1
DCAR_025482 Daucus carota HOM05D002282 ORTHO05D002403 3.5e-55 219.2 250 53.2
CSS0048718 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 1.0e-54 217.6 217 58.1
MBI04_g10418_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 1.8e-54 216.9 242 53.7
Ciclev10025131m.g Citrus clementina HOM05D002282 ORTHO05D002403 3.9e-54 215.7 219 58.4
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 8.7e-54 214.5 223 54.7
Thecc.06G073800 Theobroma cacao HOM05D002282 ORTHO05D002403 2.5e-53 213.0 251 53.8
MD15G1387900 Malus domestica HOM05D002282 ORTHO05D002403 4.3e-53 212.2 197 61.9
Rhsim08G0216500 Rhododendron simsii HOM05D002282 ORTHO05D002403 4.3e-53 212.2 252 53.6
QL06p023750 Quercus lobata HOM05D002282 ORTHO05D002403 5.6e-53 211.8 215 55.3
Duzib235G0185 Durio zibethinus HOM05D002282 ORTHO05D002403 1.6e-52 210.3 228 57.5
COL.COLO4_23901 Corchorus olitorius HOM05D002282 ORTHO05D002403 2.8e-52 209.5 235 55.7
Prupe.6G012700 Prunus persica HOM05D002282 ORTHO05D002403 2.8e-52 209.5 195 62.6
CiPaw.01G244200 Carya illinoinensis HOM05D002282 ORTHO05D002403 6.2e-52 208.4 210 58.1
COL.COLO4_12890 Corchorus olitorius HOM05D002282 ORTHO05D002403 8.1e-52 208.0 224 57.6
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 8.1e-52 208.0 216 57.4
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 8.1e-52 208.0 190 60.5
Sed0027048 Sechium edule HOM05D002282 ORTHO05D002403 1.1e-51 207.6 223 55.6
RcHm_v2.0_Chr5g0081181 Rosa chinensis HOM05D002282 ORTHO05D002403 1.4e-51 207.2 248 53.2
HanXRQChr04g0096701 Helianthus annuus HOM05D002282 ORTHO05D002403 1.8e-51 206.8 211 55.5
HanXRQChr04g0097161 Helianthus annuus HOM05D002282 ORTHO05D002403 1.8e-51 206.8 211 55.5
HanXRQChr04g0097221 Helianthus annuus HOM05D002282 ORTHO05D002403 1.8e-51 206.8 211 55.5
GSVIVG01017246001 Vitis vinifera HOM05D002282 ORTHO05D002403 2.4e-51 206.5 220 55.0
Lalb_Chr04g0262501 Lupinus albus HOM05D002282 ORTHO05D002403 3.1e-51 206.1 244 52.9
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 5.3e-51 205.3 205 56.1
Haze_05779 Corylus avellana HOM05D002282 ORTHO05D002403 9.0e-51 204.5 238 51.3
RcHm_v2.0_Chr1g0331681 Rosa chinensis HOM05D002282 ORTHO05D002403 1.5e-50 203.8 268 50.4
Sed0003011 Sechium edule HOM05D002282 ORTHO05D002403 2.0e-50 203.4 222 54.5
Gohir.D05G125900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 3.4e-50 202.6 233 56.2
Gorai.009G129900 Gossypium raimondii HOM05D002282 ORTHO05D002403 4.5e-50 202.2 233 56.2
Hund00550 Selenicereus undatus HOM05D002282 ORTHO05D002403 5.8e-50 201.8 219 52.5
Aqoxy7G02081 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 1.0e-49 201.1 212 55.2
Gohir.A05G124900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 1.0e-49 201.1 239 55.2
arahy.Tifrunner.gnm1.ann1.NNZF0Z Arachis hypogaea HOM05D002282 ORTHO05D002403 2.2e-49 199.9 234 51.3
FAN25G3025 Fragaria x ananassa HOM05D002282 ORTHO05D002403 2.9e-49 199.5 227 52.9
Actinidia01770 Actinidia chinensis HOM05D002282 ORTHO05D002403 4.9e-49 198.7 225 53.8
TPR.G3896 Trifolium pratense HOM05D002282 ORTHO05D002403 6.5e-49 198.4 195 59.5
Phvul.010G153600 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 1.1e-48 197.6 245 48.6
PGR031G0824 Punica granatum HOM05D002282 ORTHO05D002403 1.1e-48 197.6 235 51.9
CsaV3_7G032650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 1.4e-48 197.2 225 52.4
FAN11G0586 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.4e-48 197.2 187 58.3
Lj3g0004862 Lotus japonicus HOM05D002282 ORTHO05D002403 1.9e-48 196.8 222 52.3
Sabra03G0035200 Salix brachista HOM05D002282 ORTHO05D002403 4.2e-48 195.7 247 52.2
CiPaw.02G154700 Carya illinoinensis HOM05D002282 ORTHO05D002403 5.5e-48 195.3 210 52.9
QL05p027693 Quercus lobata HOM05D002282 ORTHO05D002403 1.2e-47 194.1 229 51.1
arahy.Tifrunner.gnm1.ann1.CV1QS0 Arachis hypogaea HOM05D002282 ORTHO05D002403 4.6e-47 192.2 199 54.3
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 4.6e-47 192.2 218 52.8
Eucgr.I02097 Eucalyptus grandis HOM05D002282 ORTHO05D002403 1.3e-46 190.7 196 58.2
Ah.01g020860 Amaranthus hybridus HOM05D000121 ORTHO05D000102 5.1e-46 188.7 223 49.8
unitig_747.g21506 Utricularia gibba HOM05D002282 ORTHO05D002403 8.7e-46 188.0 228 51.8
FAN16G2654 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.5e-45 187.2 261 47.5
CDE07G0270 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 4.3e-45 185.7 246 49.2
PSO339G0191 Papaver somniferum HOM05D002282 ORTHO05D002403 1.3e-44 184.1 213 52.1
VMungo0331G0533 Vigna mungo HOM05D002282 ORTHO05D002403 1.6e-44 183.7 252 46.8
AUR62011569 Chenopodium quinoa HOM05D002282 ORTHO05D002403 2.1e-44 183.3 179 55.3
CARHR015980 Cardamine hirsuta HOM05D002282 ORTHO05D002403 8.2e-44 181.4 259 47.1
BcaB03g13061 Brassica carinata HOM05D002282 ORTHO05D002403 4.1e-43 179.1 214 51.9
ClCG09G002680 Citrullus lanatus HOM05D002282 ORTHO05D002403 4.1e-43 179.1 252 46.8
Psat7g255200 Pisum sativum HOM05D002282 ORTHO05D002403 4.5e-42 175.6 228 48.7
Hund06582 Selenicereus undatus HOM05D002282 ORTHO05D002403 7.6e-42 174.9 187 51.3
EL10Ac9g21953 Beta vulgaris HOM05D000121 ORTHO05D000102 1.0e-41 174.5 222 49.1
MELO3C023398.2 Cucumis melo HOM05D002282 ORTHO05D002403 1.0e-41 174.5 193 53.4
Thhalv10008433m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 2.2e-41 173.3 227 49.3
vmacro18959 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 2.9e-41 172.9 245 49.8
BraA08t35080Z Brassica rapa HOM05D002282 ORTHO05D002403 3.8e-41 172.6 220 49.1
Os01g0649000 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 3.8e-41 172.6 225 48.0
C08p17190 Brassica napus HOM05D002282 ORTHO05D002403 5.0e-41 172.2 231 48.5
BolC8t49348H Brassica oleracea HOM05D002282 ORTHO05D002403 5.0e-41 172.2 231 48.5
PSO782G5325 Papaver somniferum HOM05D002282 ORTHO05D002403 5.0e-41 172.2 173 54.9
A08p31580 Brassica napus HOM05D002282 ORTHO05D002403 6.5e-41 171.8 231 48.1
C05p13600 Brassica napus HOM05D002282 ORTHO05D002403 8.5e-41 171.4 187 52.4
Sp1g13790 Schrenkiella parvula HOM05D002282 ORTHO05D002403 8.5e-41 171.4 231 47.2
BolC5t30096H Brassica oleracea HOM05D002282 ORTHO05D002403 1.1e-40 171.0 187 52.4
PSO170G0153 Papaver somniferum HOM05D002282 ORTHO05D002403 1.4e-40 170.6 181 52.5
SHI18081 Sapria himalayana HOM05D002282 ORTHO05D002403 1.9e-40 170.2 210 49.0
Aa31LG3G13660 Aethionema arabicum HOM05D002282 ORTHO05D002403 3.2e-40 169.5 220 49.5
Zm00001eb294740 Zea mays HOM05D002282 ORTHO05D002403 3.2e-40 169.5 211 48.8
AT1G15420 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 4.2e-40 169.1 217 47.0
HPP92_021532 Vanilla planifolia HOM05D002282 ORTHO05D002403 5.5e-40 168.7 215 51.6
A06p11480 Brassica napus HOM05D002282 ORTHO05D002403 7.2e-40 168.3 253 45.5
HPP92_021486 Vanilla planifolia HOM05D002282 ORTHO05D002403 7.2e-40 168.3 201 51.7
BraA06t24325Z Brassica rapa HOM05D002282 ORTHO05D002403 1.2e-39 167.5 178 53.4
Medtr4g011300 Medicago truncatula HOM05D002282 ORTHO05D002403 1.6e-39 167.2 247 44.9
BcaC07g38789 Brassica carinata HOM05D002282 ORTHO05D002403 2.1e-39 166.8 233 45.5
AL1G27540 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 4.6e-39 165.6 213 46.0
Carub.0001s1522 Capsella rubella HOM05D002282 ORTHO05D002403 6.1e-39 165.2 215 47.4
Os12g0634800 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 3.0e-38 162.9 229 45.4
BolC8t52042H Brassica oleracea HOM05D002282 ORTHO05D002403 1.3e-36 157.5 179 49.7
THA.LOC104812495 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 1.3e-36 157.5 217 46.1
ATR0580G098 Amborella trichopoda HOM05D002282 ORTHO05D002403 8.2e-36 154.8 244 43.4
BcaC07g41500 Brassica carinata HOM05D002282 ORTHO05D002403 1.8e-35 153.7 167 50.3
Sc12g0008870 Simmondsia chinensis HOM05D002282 ORTHO05D002403 2.4e-35 153.3 175 52.6
TPR.G8058 Trifolium pratense HOM05D002282 ORTHO05D002403 4.1e-35 152.5 135 60.0
AUR62016386 Chenopodium quinoa HOM05D002282 ORTHO05D002403 6.9e-35 151.8 169 50.9
Glyma.08G210000 Glycine max HOM05D002282 ORTHO05D002403 1.2e-34 151.0 224 44.2
Duzib192G0585 Durio zibethinus HOM05D002282 ORTHO05D002403 5.0e-33 145.6 118 64.4
BcaB03g14539 Brassica carinata HOM05D002282 ORTHO05D002403 1.1e-32 144.4 183 50.8
Lj3g0012512 Lotus japonicus HOM05D002282 ORTHO05D002403 7.2e-32 141.7 155 50.3
C08p44950 Brassica napus HOM05D002282 ORTHO05D002403 2.7e-31 139.8 184 48.4
MD15G1388000 Malus domestica HOM05D002282 ORTHO05D002403 3.6e-31 139.4 149 57.0
Glyma.07G032500 Glycine max HOM05D002282 ORTHO05D002403 1.8e-30 137.1 226 41.2
A09p61400 Brassica napus HOM05D002282 ORTHO05D002403 3.9e-30 136.0 164 48.2
Glyma.13G363200 Glycine max HOM05D002282 ORTHO05D002403 6.7e-30 135.2 203 42.4
HanXRQChr00c0540g0575621 Helianthus annuus HOM05D002282 ORTHO05D002403 2.0e-29 133.7 138 57.2
FAN21G1567 Fragaria x ananassa HOM05D002282 ORTHO05D002403 2.6e-29 133.3 173 49.7
BcaC05g25485 Brassica carinata HOM05D002282 ORTHO05D002403 8.2e-28 128.3 130 52.3
MD14G1090800 Malus domestica HOM05D002282 ORTHO05D002403 8.2e-28 128.3 203 44.8
Ca_20422_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 4.2e-24 115.9 223 36.8
Mapoly0078s0006 Marchantia polymorpha HOM05D002282 ORTHO05D002403 1.7e-20 104.0 222 33.3
Glyma.15G010600 Glycine max HOM05D002282 ORTHO05D002403 2.8e-20 103.2 104 51.9
Manes.04G116700 Manihot esculenta HOM05D002282 ORTHO05D002403 6.3e-20 102.1 127 48.8
FvH4_3g44480 Fragaria vesca HOM05D002282 ORTHO05D002403 1.6e-18 97.4 99 52.5
Pp3c7_70 Physcomitrium patens HOM05D002282 ORTHO05D002403 3.8e-17 92.8 215 33.0
CDE06G0942 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 4.2e-16 89.4 101 57.4
HanXRQChr04g0097171 Helianthus annuus HOM05D004669 ORTHO05D005767 5.5e-16 89.0 66 68.2
BraA09t41511Z Brassica rapa HOM05D002282 ORTHO05D002403 1.6e-15 87.4 104 53.8
AagrBONN_evm.TU.Sc2ySwM_362.229 Anthoceros agrestis HOM05D002282 ORTHO05D002403 3.0e-14 83.2 171 35.7
BraA09t41510Z Brassica rapa HOM05D002282 ORTHO05D002403 3.0e-14 83.2 105 44.8
SEGI_26113 Sequoiadendron giganteum HOM05D002282 ORTHO05D002403 2.6e-13 80.1 184 34.2
MD12G1094900 Malus domestica HOM05D002282 ORTHO05D002403 7.0e-11 72.0 110 46.4
Cre12.g538500 Chlamydomonas reinhardtii HOM05D002282 ORTHO05D002403 1.7e-09 67.4 164 33.5
Glyma.14G118600 Glycine max HOM05D002282 ORTHO05D002403 7.2e-08 62.0 65 56.9
CBR_g57080 Chara braunii HOM05D002282 ORTHO05D002403 1.6e-07 60.8 227 30.0
MD12G1094800 Malus domestica HOM05D002282 ORTHO05D002403 1.6e-07 60.8 65 55.4
MCO14G074 Micromonas commoda HOM05D002282 ORTHO05D002403 3.6e-07 59.7 195 28.7
SMO361G0163 Selaginella moellendorffii HOM05D002282 ORTHO05D002403 6.1e-07 58.9 220 28.6


User provided reference genes

Program Settings