Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 6.0e-233 810.4 405 100.0
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 6.6e-163 577.8 409 71.9
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 6.8e-160 567.8 413 66.1
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 1.5e-154 550.1 408 65.0
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 6.2e-153 544.7 408 66.7
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 1.4e-152 543.5 487 57.7
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 1.1e-149 533.9 408 64.7
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 1.4e-149 533.5 408 64.7
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 1.4e-149 533.5 408 64.7
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 5.4e-149 531.6 395 67.3
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 1.2e-148 530.4 408 64.5
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 2.3e-147 526.2 411 63.7
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 1.5e-146 523.5 400 62.5
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 1.5e-146 523.5 410 62.0
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 4.0e-144 515.4 411 63.0
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 5.2e-144 515.0 411 62.5
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 1.9e-141 506.5 409 63.8
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 3.5e-140 502.3 418 62.0
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 3.5e-140 502.3 341 69.8
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 2.3e-139 499.6 344 70.1
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 1.5e-138 496.9 345 67.8
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 1.9e-138 496.5 400 61.0
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 2.5e-138 496.1 355 66.5
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 7.3e-138 494.6 362 66.0
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 1.2e-137 493.8 318 75.5
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 1.8e-136 490.0 344 67.4
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 1.8e-136 490.0 395 61.5
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 3.1e-136 489.2 346 67.3
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 3.1e-136 489.2 346 67.6
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 4.0e-136 488.8 367 67.6
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 5.2e-136 488.4 345 68.7
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 9.0e-136 487.6 345 67.2
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 2.0e-135 486.5 344 66.6
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 2.0e-135 486.5 345 67.0
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 3.4e-135 485.7 345 67.0
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 5.8e-135 485.0 345 65.8
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 7.6e-135 484.6 344 69.8
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 9.9e-135 484.2 344 66.6
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 9.9e-135 484.2 394 61.2
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 6.4e-134 481.5 407 61.4
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 8.4e-134 481.1 345 65.2
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 8.4e-134 481.1 345 66.7
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 1.1e-133 480.7 344 66.0
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 1.1e-133 480.7 348 66.1
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 1.4e-133 480.3 398 59.0
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 3.2e-133 479.2 335 67.5
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 5.4e-133 478.4 343 67.6
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 7.1e-133 478.0 341 66.9
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 9.3e-133 477.6 334 68.9
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.0e-131 474.2 314 70.4
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 1.0e-131 474.2 342 66.7
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 1.0e-131 474.2 422 57.6
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 6.6e-131 471.5 354 64.4
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 1.1e-130 470.7 332 69.3
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 1.9e-130 469.9 344 65.4
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 3.3e-130 469.2 332 69.0
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 3.3e-130 469.2 332 69.0
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 9.6e-130 467.6 344 62.5
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 2.1e-129 466.5 340 66.5
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 2.4e-128 463.0 354 62.7
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 3.1e-128 462.6 340 65.6
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 3.1e-128 462.6 340 65.9
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 3.1e-128 462.6 357 63.6
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 2.0e-127 459.9 341 64.2
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 3.4e-127 459.1 345 62.3
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 7.6e-127 458.0 344 63.7
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 9.9e-127 457.6 402 57.0
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 1.3e-126 457.2 338 63.6
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 3.8e-126 455.7 346 62.7
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 4.9e-126 455.3 345 64.1
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 4.9e-126 455.3 344 64.0
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 8.4e-126 454.5 317 66.6
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 8.4e-126 454.5 339 63.4
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 8.4e-126 454.5 339 63.4
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 1.1e-125 454.1 339 63.1
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 1.4e-125 453.8 368 60.1
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 3.2e-125 452.6 339 63.1
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 5.4e-125 451.8 306 69.9
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 7.1e-125 451.4 342 64.0
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 9.3e-125 451.1 392 57.9
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 1.2e-124 450.7 339 62.5
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 1.6e-124 450.3 364 62.6
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 2.1e-124 449.9 344 62.2
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 4.6e-124 448.7 388 57.2
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 7.9e-124 448.0 347 61.1
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 1.8e-123 446.8 336 62.5
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 3.9e-123 445.7 348 61.2
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 6.7e-123 444.9 391 56.8
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 8.7e-123 444.5 388 56.7
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 8.7e-123 444.5 388 56.7
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 1.5e-122 443.7 339 61.7
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 1.5e-122 443.7 341 61.9
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 9.6e-122 441.0 350 59.7
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 1.3e-121 440.7 321 66.7
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 4.8e-121 438.7 341 61.3
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 2.4e-120 436.4 345 63.8
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 2.9e-118 429.5 345 62.6
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 1.6e-116 423.7 358 60.6
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 2.7e-116 422.9 401 54.4
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 3.7e-113 412.5 605 43.3
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 5.3e-112 408.7 370 59.2
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 2.0e-111 406.8 275 72.7
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 7.6e-111 404.8 319 60.8
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 1.0e-110 404.4 314 62.1
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 7.9e-108 394.8 277 67.9
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 2.3e-107 393.3 268 67.5
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 3.9e-107 392.5 278 69.1
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 1.2e-103 380.9 276 67.8
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 3.6e-100 369.4 294 63.3
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 6.9e-96 355.1 298 58.1
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 4.5e-95 352.4 261 60.9
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 1.4e-91 340.9 317 53.3
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 2.6e-90 336.7 316 53.8
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 5.7e-90 335.5 314 53.2
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 2.8e-89 333.2 388 47.2
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 3.7e-89 332.8 316 50.9
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 1.5e-87 327.4 288 59.4
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 5.0e-86 322.4 362 44.8
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 2.3e-83 313.5 228 67.1
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 1.1e-82 311.2 216 66.2
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 8.2e-81 305.1 220 61.4
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 2.1e-76 290.4 325 52.6
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 2.2e-73 280.4 201 71.1
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 2.8e-73 280.0 266 54.5
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 5.5e-69 265.8 171 71.3
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 3.0e-67 260.0 202 65.8
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 3.7e-65 253.1 186 66.1
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 7.0e-64 248.8 244 51.6
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 9.8e-50 201.8 225 51.1
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 4.3e-45 186.4 117 65.0
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 6.8e-43 179.1 335 34.6
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 2.1e-39 167.5 150 54.7
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 8.6e-38 162.2 168 52.4
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 4.4e-34 149.8 302 32.1
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 2.2e-33 147.5 93 69.9
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 7.8e-31 139.0 292 32.9
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 1.9e-29 134.4 75 82.7
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 2.4e-24 117.5 99 51.5
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 1.4e-16 91.7 99 51.5
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 9.3e-16 89.0 134 39.6
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 1.0e-14 85.5 74 59.5
Pp3c21_10850 Physcomitrium patens HOM05D005356 ORTHO05D310352 1.8e-11 74.7 187 27.8


User provided reference genes

Program Settings