Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.C01013 Erythranthe guttata HOM05D004716 ORTHO05D005646 0.0e+00 1144.8 581 100.0
Oeu046025.1 Olea europaea HOM05D004716 ORTHO05D005646 9.9e-213 743.8 627 64.8
Migut.N03224 Erythranthe guttata HOM05D004716 ORTHO05D005646 1.2e-210 736.9 652 61.3
MSTRG.22371 Avicennia marina HOM05D004716 ORTHO05D005646 5.1e-209 731.5 656 61.7
SalBow7G0781 Salvia bowleyana HOM05D004716 ORTHO05D005646 2.5e-208 729.2 621 63.1
Dinv41092 Davidia involucrata HOM05D004716 ORTHO05D005646 4.6e-202 708.4 634 60.6
SGA_v2.0_scaffold25G11175 Striga asiatica HOM05D004716 ORTHO05D005646 1.3e-199 700.3 656 58.1
Nitab4.5_0008759g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 5.9e-197 691.4 635 59.2
Cc10_g14730 Coffea canephora HOM05D004716 ORTHO05D005646 1.7e-196 689.9 644 59.2
Peaxi162Scf00765g00315 Petunia axillaris HOM05D004716 ORTHO05D005646 1.4e-195 686.8 628 59.2
Dinv25852 Davidia involucrata HOM05D004716 ORTHO05D005646 1.9e-195 686.4 634 59.0
Nitab4.5_0000032g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 1.2e-194 683.7 635 59.1
Haze_17746 Corylus avellana HOM05D004716 ORTHO05D005646 1.0e-193 680.6 621 59.4
Cfa018329 Carpinus fangiana HOM05D004716 ORTHO05D005646 1.4e-193 680.2 621 59.1
Actinidia17798 Actinidia chinensis HOM05D004716 ORTHO05D005646 2.3e-193 679.5 625 60.3
Hma1.2p1_0105F.1_g050810 Hydrangea macrophylla HOM05D004716 ORTHO05D005646 2.3e-193 679.5 653 56.0
HanXRQChr10g0279061 Helianthus annuus HOM05D004716 ORTHO05D005646 3.3e-192 675.6 627 58.1
Sed0005850 Sechium edule HOM05D004716 ORTHO05D005646 4.3e-192 675.2 612 60.0
ClCG09G009620 Citrullus lanatus HOM05D004716 ORTHO05D005646 5.7e-192 674.9 617 58.5
ECA246G4589 Erigeron canadensis HOM05D004716 ORTHO05D005646 5.7e-192 674.9 513 66.7
Manes.18G091200 Manihot esculenta HOM05D004716 ORTHO05D005646 1.7e-191 673.3 615 59.2
arahy.Tifrunner.gnm1.ann1.LT68UB Arachis hypogaea HOM05D004716 ORTHO05D005646 2.8e-191 672.5 643 57.5
arahy.Tifrunner.gnm1.ann1.RZZD7S Arachis hypogaea HOM05D004716 ORTHO05D005646 2.8e-191 672.5 643 57.5
CiPaw.15G016900 Carya illinoinensis HOM05D004716 ORTHO05D005646 8.2e-191 671.0 619 58.3
Potri.005G191300 Populus trichocarpa HOM05D004716 ORTHO05D005646 8.2e-191 671.0 624 58.0
CiPaw.16G013500 Carya illinoinensis HOM05D004716 ORTHO05D005646 1.1e-190 670.6 620 58.5
MD05G1023700 Malus domestica HOM05D004716 ORTHO05D005646 2.4e-190 669.5 628 58.9
Potri.002G069100 Populus trichocarpa HOM05D004716 ORTHO05D005646 2.4e-190 669.5 638 56.9
MELO3C023718.2 Cucumis melo HOM05D004716 ORTHO05D005646 3.1e-190 669.1 615 58.2
Prupe.8G028200 Prunus persica HOM05D004716 ORTHO05D005646 5.3e-190 668.3 626 57.5
Atru.chr13.2155 Acer truncatum HOM05D004716 ORTHO05D005646 9.1e-190 667.5 641 57.4
CAN.G268.7 Capsicum annuum HOM05D004716 ORTHO05D005646 2.6e-189 666.0 517 65.8
CsaV3_7G025180 Cucumis sativus L. HOM05D004716 ORTHO05D005646 1.0e-188 664.1 618 57.8
GSVIVG01034512001 Vitis vinifera HOM05D004716 ORTHO05D005646 1.7e-188 663.3 624 57.4
DCAR_001131 Daucus carota HOM05D004716 ORTHO05D005646 3.8e-188 662.1 615 57.6
Lsat_1_v5_gn_6_99641 Lactuca sativa HOM05D004716 ORTHO05D005646 5.0e-188 661.8 621 58.5
TWI34G0952 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 1.4e-187 660.2 621 58.3
Sopen04g027280 Solanum pennellii HOM05D004716 ORTHO05D005646 1.9e-187 659.8 646 56.8
FAN27G2333 Fragaria x ananassa HOM05D004716 ORTHO05D005646 2.5e-187 659.4 617 57.5
Rhsim06G0090400 Rhododendron simsii HOM05D004716 ORTHO05D005646 3.2e-187 659.1 628 58.3
Sabra05G0146100 Salix brachista HOM05D004716 ORTHO05D005646 3.2e-187 659.1 624 57.4
Sed0004003 Sechium edule HOM05D004716 ORTHO05D005646 4.2e-187 658.7 513 65.5
TWI60G0041 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 5.5e-187 658.3 617 58.7
RcHm_v2.0_Chr6g0275661 Rosa chinensis HOM05D004716 ORTHO05D005646 7.2e-187 657.9 625 57.6
SGA_v2.0_scaffold24G10374 Striga asiatica HOM05D004716 ORTHO05D005646 7.2e-187 657.9 626 59.1
AUR62013572 Chenopodium quinoa HOM05D004716 ORTHO05D005646 1.6e-186 656.8 639 56.7
FAN24G2048 Fragaria x ananassa HOM05D004716 ORTHO05D005646 2.7e-186 656.0 617 57.4
FvH4_2g13910 Fragaria vesca HOM05D004716 ORTHO05D005646 4.7e-186 655.2 617 57.2
MD10G1024300 Malus domestica HOM05D004716 ORTHO05D005646 6.1e-186 654.8 630 57.3
Solyc04g071320.4 Solanum lycopersicum HOM05D004716 ORTHO05D005646 6.1e-186 654.8 648 56.0
FAN15G2444 Fragaria x ananassa HOM05D004716 ORTHO05D005646 1.0e-185 654.1 613 57.4
Lj7A371T50 Lonicera japonica HOM05D004716 ORTHO05D005646 1.0e-185 654.1 536 64.0
Sed0016522 Sechium edule HOM05D004716 ORTHO05D005646 3.0e-185 652.5 606 57.8
TAR381G1500 Trochodendron aralioides HOM05D004716 ORTHO05D005646 3.0e-185 652.5 519 63.6
Thecc.08G149900 Theobroma cacao HOM05D004716 ORTHO05D005646 3.9e-185 652.1 617 58.0
FAN20G2258 Fragaria x ananassa HOM05D004716 ORTHO05D005646 8.8e-185 651.0 617 56.9
AUR62026717 Chenopodium quinoa HOM05D004716 ORTHO05D005646 1.5e-184 650.2 596 59.1
CANSAT25G0539 Cannabis sativa HOM05D004716 ORTHO05D005646 2.0e-184 649.8 633 55.6
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 4.4e-184 648.7 637 55.6
TAR625G0458 Trochodendron aralioides HOM05D004716 ORTHO05D005646 5.7e-184 648.3 640 55.2
Glyma.20G166300 Glycine max HOM05D004716 ORTHO05D005646 9.7e-184 647.5 615 57.6
Duzib093G0980 Durio zibethinus HOM05D004716 ORTHO05D005646 1.7e-183 646.7 617 57.2
Duzib116G0661 Durio zibethinus HOM05D004716 ORTHO05D005646 6.3e-183 644.8 616 57.3
COL.COLO4_37837 Corchorus olitorius HOM05D004716 ORTHO05D005646 1.8e-182 643.3 620 58.1
Glyma.10G225500 Glycine max HOM05D004716 ORTHO05D005646 3.1e-182 642.5 616 57.6
Ah.05g167860 Amaranthus hybridus HOM05D004716 ORTHO05D005646 4.1e-182 642.1 617 56.1
unitig_62.g23528 Utricularia gibba HOM05D004716 ORTHO05D005646 1.5e-181 640.2 518 65.4
Duzib041G0148 Durio zibethinus HOM05D004716 ORTHO05D005646 4.5e-181 638.6 617 57.7
Gohir.A05G242900 Gossypium hirsutum HOM05D004716 ORTHO05D005646 5.9e-181 638.3 516 63.4
Lalb_Chr01g0009631 Lupinus albus HOM05D004716 ORTHO05D005646 1.0e-180 637.5 640 55.0
Phvul.007G079400 Phaseolus vulgaris HOM05D004716 ORTHO05D005646 1.0e-180 637.5 611 58.4
Gorai.009G253500 Gossypium raimondii HOM05D004716 ORTHO05D005646 1.7e-180 636.7 516 63.6
Eucgr.F04241 Eucalyptus grandis HOM05D004716 ORTHO05D005646 2.2e-180 636.3 644 55.6
SalBow6G6163 Salvia bowleyana HOM05D004716 ORTHO05D005646 2.2e-180 636.3 681 54.8
Ca_19935_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 3.8e-180 635.6 631 56.9
MBI09_g32373_MAGBIO Magnolia biondii HOM05D004716 ORTHO05D005646 1.9e-179 633.3 518 62.9
Ciclev10000573m.g Citrus clementina HOM05D004716 ORTHO05D005646 2.5e-179 632.9 643 55.2
Aqoxy5G02106 Aquilegia oxysepala HOM05D004716 ORTHO05D005646 3.2e-179 632.5 634 55.2
TPR.G36694 Trifolium pratense HOM05D004716 ORTHO05D005646 4.2e-179 632.1 566 59.9
EL10Ac1g01533 Beta vulgaris HOM05D004716 ORTHO05D005646 7.2e-179 631.3 628 54.9
THA.LOC104809692 Tarenaya hassleriana HOM05D004716 ORTHO05D005646 6.1e-178 628.2 564 58.3
Lalb_Chr06g0161551 Lupinus albus HOM05D004716 ORTHO05D005646 5.2e-177 625.2 593 57.8
PGR044G2101 Punica granatum HOM05D004716 ORTHO05D005646 5.2e-177 625.2 630 54.6
Lj5g0004042 Lotus japonicus HOM05D004716 ORTHO05D005646 2.0e-176 623.2 627 56.5
PSO238G0051 Papaver somniferum HOM05D004716 ORTHO05D005646 7.4e-176 621.3 652 53.4
BcaC08g42816 Brassica carinata HOM05D004716 ORTHO05D005646 4.8e-175 618.6 604 57.0
C06p00280 Brassica napus HOM05D004716 ORTHO05D005646 4.8e-175 618.6 604 57.0
BcaB07g33979 Brassica carinata HOM05D004716 ORTHO05D005646 1.4e-174 617.1 623 56.0
Aa31LG6G9740 Aethionema arabicum HOM05D004716 ORTHO05D005646 4.1e-174 615.5 635 54.6
PSO210G2251 Papaver somniferum HOM05D004716 ORTHO05D005646 4.1e-174 615.5 652 53.2
A10p07790 Brassica napus HOM05D004716 ORTHO05D005646 9.1e-174 614.4 610 56.7
BraSC36t46025Z Brassica rapa HOM05D004716 ORTHO05D005646 1.6e-173 613.6 610 56.6
Nn5g28715 Nelumbo nucifera HOM05D004716 ORTHO05D005646 1.6e-173 613.6 642 53.9
Sp1g32700 Schrenkiella parvula HOM05D004716 ORTHO05D005646 3.5e-173 612.5 637 54.2
AL1G51810 Arabidopsis lyrata HOM05D004716 ORTHO05D005646 1.7e-172 610.1 624 54.6
Gohir.A05G270100 Gossypium hirsutum HOM05D004716 ORTHO05D005646 3.8e-172 609.0 616 55.7
Thhalv10011324m.g Eutrema salsugineum HOM05D004716 ORTHO05D005646 6.5e-172 608.2 639 54.1
QL02p024060 Quercus lobata HOM05D004716 ORTHO05D005646 8.5e-172 607.8 751 48.7
Carub.0001s3471 Capsella rubella HOM05D004716 ORTHO05D005646 1.1e-171 607.4 623 54.7
Gorai.009G285100 Gossypium raimondii HOM05D004716 ORTHO05D005646 1.6e-170 603.6 616 55.2
AT1G43690 Arabidopsis thaliana HOM05D004716 ORTHO05D005646 3.6e-170 602.4 623 54.6
Nn1g06102 Nelumbo nucifera HOM05D004716 ORTHO05D005646 4.0e-169 599.0 487 63.4
CARHR035580 Cardamine hirsuta HOM05D004716 ORTHO05D005646 5.3e-166 588.6 604 53.5
Gohir.D05G244400 Gossypium hirsutum HOM05D004716 ORTHO05D005646 7.0e-166 588.2 612 54.1
TPR.G30003 Trifolium pratense HOM05D004716 ORTHO05D005646 1.6e-165 587.0 568 57.7
CDE08G0143 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 3.8e-164 582.4 619 53.2
Lj4C695G10 Lonicera japonica HOM05D004716 ORTHO05D005646 1.5e-163 580.5 583 55.4
Gohir.D05G272200 Gossypium hirsutum HOM05D004716 ORTHO05D005646 4.2e-163 578.9 616 53.7
Zm00001eb422340 Zea mays HOM05D004716 ORTHO05D005646 1.0e-161 574.3 516 58.3
Medtr1g098940 Medicago truncatula HOM05D004716 ORTHO05D005646 6.8e-161 571.6 591 55.3
CSS0049856 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 8.8e-161 571.2 462 64.9
Oeu011938.1 Olea europaea HOM05D004716 ORTHO05D005646 1.2e-154 550.8 631 52.0
SHI09390 Sapria himalayana HOM05D004716 ORTHO05D005646 3.1e-150 536.2 489 57.7
Sc02g0004170 Simmondsia chinensis HOM05D004716 ORTHO05D005646 5.6e-147 525.4 459 59.9
Ca_25988_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 3.0e-145 519.6 401 65.8
ATR0772G093 Amborella trichopoda HOM05D004716 ORTHO05D005646 6.8e-145 518.5 467 59.3
SMO331G0079 Selaginella moellendorffii HOM05D004716 ORTHO05D005646 7.5e-144 515.0 564 50.4
Oeu014493.1 Olea europaea HOM05D004716 ORTHO05D005646 1.9e-142 510.4 367 71.1
Mapoly0014s0164 Marchantia polymorpha HOM05D004716 ORTHO05D005646 7.0e-142 508.4 521 51.6
Cpa.g.sc21.190 Carica papaya HOM05D004716 ORTHO05D005646 1.2e-141 507.7 434 62.7
HPP92_019355 Vanilla planifolia HOM05D004716 ORTHO05D005646 2.8e-138 496.5 541 51.2
Pp3c6_18530 Physcomitrium patens HOM05D004716 ORTHO05D005646 1.8e-137 493.8 517 50.9
Pp3c5_6660 Physcomitrium patens HOM05D004716 ORTHO05D005646 8.9e-137 491.5 516 50.0
AagrBONN_evm.TU.Sc2ySwM_344.4417 Anthoceros agrestis HOM05D004716 ORTHO05D005646 5.1e-132 475.7 524 50.0
CDE06G2375 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 1.4e-129 467.6 616 45.9
CBR_g11170 Chara braunii HOM05D004716 ORTHO05D005646 1.2e-122 444.5 581 44.1
Psat6g193200 Pisum sativum HOM05D004716 ORTHO05D005646 4.7e-122 442.6 324 69.4
Psat6g193040 Pisum sativum HOM05D004716 ORTHO05D005646 4.7e-114 416.0 306 68.3
vmacro21155 Vaccinium macrocarpon HOM05D004716 ORTHO05D005646 1.9e-110 404.1 319 65.2
Zm00001eb422260 Zea mays HOM05D004716 ORTHO05D005646 7.1e-110 402.1 315 63.8
Os04g0421800 Oryza sativa ssp. japonica HOM05D004716 ORTHO05D005646 1.8e-105 387.5 299 62.9
HanXRQChr10g0277841 Helianthus annuus HOM05D004716 ORTHO05D005646 2.5e-99 367.1 312 63.8
Zm00001eb422280 Zea mays HOM05D004716 ORTHO05D005646 8.7e-84 315.5 259 59.8
Zm00001eb422320 Zea mays HOM05D004716 ORTHO05D005646 8.7e-84 315.5 259 59.8
Actinidia10653 Actinidia chinensis HOM05D004716 ORTHO05D005646 2.1e-61 241.1 230 60.4
PRCOL_00002924 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 1.9e-54 218.0 385 37.4
VMungo0464G1352 Vigna mungo HOM05D004716 ORTHO05D005646 2.7e-32 144.4 157 52.2
Cre06.g286600 Chlamydomonas reinhardtii HOM05D004716 ORTHO05D005646 3.9e-31 140.6 359 32.6
CAN.G309.90 Capsicum annuum HOM05D004716 ORTHO05D005646 5.6e-30 136.7 178 47.2
PRCOL_00004133 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 2.6e-27 127.9 342 32.2
Cpa.g.sc21.191 Carica papaya HOM05D004716 ORTHO05D005646 3.5e-24 117.5 167 46.7
Actinidia13988 Actinidia chinensis HOM05D004716 ORTHO05D005646 7.3e-22 109.8 87 56.3
Actinidia10651 Actinidia chinensis HOM05D004716 ORTHO05D005646 2.4e-17 94.7 158 40.5
ATR0772G018 Amborella trichopoda HOM05D004716 ORTHO05D005646 3.2e-17 94.4 189 36.5
TAR636G3535 Trochodendron aralioides HOM05D004716 ORTHO05D005646 1.0e-15 89.4 92 57.6
Oeu014494.1 Olea europaea HOM05D004716 ORTHO05D005646 1.4e-09 68.9 76 52.6
CSS0021208 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 4.1e-09 67.4 142 36.6
Ca_25987_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 8.6e-07 59.7 127 34.6


User provided reference genes

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