Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 8.7e-74 280.4 163 100.0
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 6.1e-51 204.5 179 72.6
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 1.0e-50 203.8 167 77.2
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 9.7e-49 197.2 165 75.8
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 2.2e-48 196.1 167 73.7
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 6.3e-48 194.5 171 71.9
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 3.1e-47 192.2 163 69.3
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 5.3e-47 191.4 166 66.3
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 7.0e-47 191.0 172 72.1
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 7.0e-47 191.0 172 72.7
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 2.0e-46 189.5 171 72.5
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 3.5e-46 188.7 165 64.2
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 4.5e-46 188.3 165 63.6
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 5.9e-46 188.0 172 70.3
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 1.0e-45 187.2 172 72.1
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 1.3e-45 186.8 171 69.6
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.9e-44 183.0 170 67.6
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 9.4e-44 180.6 177 63.3
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 9.4e-44 180.6 168 71.4
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 1.2e-43 180.3 180 59.4
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 1.2e-43 180.3 181 65.2
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 1.6e-43 179.9 178 60.7
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 1.6e-43 179.9 189 63.5
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 2.7e-43 179.1 167 62.9
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 2.7e-43 179.1 176 61.9
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 6.1e-43 177.9 180 61.7
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 8.0e-43 177.6 171 69.6
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 8.0e-43 177.6 178 66.3
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 1.0e-42 177.2 173 65.9
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 1.8e-42 176.4 184 65.8
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 4.0e-42 175.3 179 65.9
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 4.0e-42 175.3 184 62.5
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 4.0e-42 175.3 176 61.4
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 8.8e-42 174.1 177 57.6
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 8.8e-42 174.1 177 61.0
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 1.2e-41 173.7 191 61.8
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.5e-41 173.3 188 61.7
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 1.5e-41 173.3 169 68.0
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 1.5e-41 173.3 186 61.3
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 2.0e-41 172.9 188 57.4
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 2.0e-41 172.9 187 56.7
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 2.0e-41 172.9 179 60.3
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 2.0e-41 172.9 188 60.1
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 2.6e-41 172.6 193 63.2
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 3.4e-41 172.2 179 63.7
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 3.4e-41 172.2 179 63.7
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 3.4e-41 172.2 168 67.9
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 4.4e-41 171.8 188 61.2
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 4.4e-41 171.8 179 65.4
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 5.7e-41 171.4 175 59.4
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 7.5e-41 171.0 187 61.5
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 7.5e-41 171.0 166 67.5
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 9.7e-41 170.6 193 61.7
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 1.3e-40 170.2 187 61.0
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 1.3e-40 170.2 178 59.0
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 1.7e-40 169.9 178 59.6
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 2.2e-40 169.5 133 78.2
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 2.2e-40 169.5 181 63.0
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 3.7e-40 168.7 155 69.7
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 3.7e-40 168.7 147 66.7
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 4.8e-40 168.3 176 59.7
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 6.3e-40 167.9 191 60.2
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 8.3e-40 167.5 180 64.4
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 1.4e-39 166.8 175 64.6
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 1.4e-39 166.8 193 61.7
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 1.4e-39 166.8 193 61.1
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 2.4e-39 166.0 181 61.9
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 3.1e-39 165.6 188 61.2
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 4.1e-39 165.2 174 64.9
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 5.3e-39 164.9 192 59.9
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 5.3e-39 164.9 188 61.2
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 7.0e-39 164.5 179 62.6
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 7.0e-39 164.5 192 62.0
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 9.1e-39 164.1 174 64.4
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 9.1e-39 164.1 182 61.0
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 1.2e-38 163.7 141 72.3
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 1.2e-38 163.7 194 60.3
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 1.2e-38 163.7 147 67.3
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 2.7e-38 162.5 179 64.2
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 2.7e-38 162.5 182 60.4
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 3.5e-38 162.2 175 65.7
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 3.5e-38 162.2 188 62.2
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 3.5e-38 162.2 198 57.1
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 5.9e-38 161.4 175 62.3
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 5.9e-38 161.4 179 63.1
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 5.9e-38 161.4 179 59.8
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 7.7e-38 161.0 175 60.0
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 7.7e-38 161.0 192 58.9
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 7.7e-38 161.0 187 60.4
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 7.7e-38 161.0 178 60.1
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 1.0e-37 160.6 175 66.3
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 1.0e-37 160.6 185 61.1
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 1.0e-37 160.6 138 68.8
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 1.3e-37 160.2 189 59.3
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 2.2e-37 159.5 175 56.6
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 2.2e-37 159.5 193 59.1
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 2.9e-37 159.1 191 57.1
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 3.8e-37 158.7 190 52.6
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 3.8e-37 158.7 192 56.2
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 6.5e-37 157.9 175 58.3
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 6.5e-37 157.9 183 59.0
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 1.1e-36 157.1 184 55.4
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 1.5e-36 156.8 194 57.7
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 1.9e-36 156.4 174 55.7
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 3.2e-36 155.6 136 71.3
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 5.5e-36 154.8 180 61.1
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 9.4e-36 154.1 185 60.5
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 2.7e-35 152.5 95 81.1
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 3.6e-35 152.1 172 64.0
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 4.7e-35 151.8 179 60.9
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 6.1e-35 151.4 177 58.2
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 8.0e-35 151.0 177 59.3
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 8.0e-35 151.0 89 83.1
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.8e-34 149.8 187 55.6
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 4.0e-34 148.7 139 68.3
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 5.2e-34 148.3 189 48.7
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 8.8e-34 147.5 190 54.2
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 8.3e-32 141.0 83 80.7
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 1.8e-31 139.8 171 55.6
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 4.1e-31 138.7 173 58.4
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 4.1e-31 138.7 146 56.8
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 7.0e-31 137.9 214 52.3
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 1.2e-30 137.1 190 45.8
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 1.6e-30 136.7 189 47.1
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 4.2e-28 128.6 75 81.3
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 2.8e-27 125.9 70 84.3
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 1.0e-26 124.0 69 79.7
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 1.5e-25 120.2 146 58.2
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 2.2e-24 116.3 142 57.7
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 1.6e-22 110.2 85 62.4
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 2.3e-21 106.3 177 48.0
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 7.3e-20 101.3 91 62.6
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 7.3e-20 101.3 103 58.3
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 1.6e-19 100.1 71 76.1
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 6.1e-19 98.2 80 58.8
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 1.0e-18 97.4 94 52.1
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 4.4e-17 92.0 80 53.8
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 2.2e-16 89.7 142 53.5
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 3.7e-16 89.0 108 61.1
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 2.7e-14 82.8 79 72.2
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 6.6e-13 78.2 124 46.8
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 1.5e-12 77.0 129 52.7
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 1.5e-09 67.0 67 53.7
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 4.1e-07 58.9 39 59.0
unitig_749.g13910 Utricularia gibba HOM05D005519 ORTHO05D006423 4.6e-06 55.5 109 42.2


User provided reference genes

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