Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 7.4e-231 803.5 408 100.0
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 5.8e-159 564.7 419 68.3
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 1.1e-154 550.4 420 66.4
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 2.6e-143 512.7 419 61.6
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 1.1e-138 497.3 423 59.8
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 1.4e-136 490.3 424 58.5
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 9.3e-133 477.6 423 57.4
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 1.2e-132 477.2 424 57.3
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 1.6e-132 476.9 424 57.1
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 7.4e-130 468.0 417 59.2
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 2.8e-129 466.1 412 59.0
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 2.6e-127 459.5 412 58.0
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 8.8e-123 444.5 426 55.2
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 2.5e-122 443.0 391 57.3
Dinv39544 Davidia involucrata HOM05D005393 ORTHO05D006257 9.1e-120 434.5 372 59.1
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 9.1e-120 434.5 408 55.4
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 3.4e-119 432.6 407 56.3
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 7.7e-119 431.4 428 53.0
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 2.9e-118 429.5 407 55.8
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 3.8e-118 429.1 408 54.7
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 3.2e-117 426.0 413 54.5
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 9.4e-117 424.5 429 52.7
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 3.6e-116 422.5 413 54.2
Peaxi162Scf01286g00014 Petunia axillaris HOM05D005393 ORTHO05D006257 4.7e-116 422.2 360 58.9
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 1.8e-115 420.2 422 52.4
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 3.9e-115 419.1 414 51.0
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 3.9e-115 419.1 388 56.4
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 1.1e-114 417.5 415 50.8
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 2.6e-114 416.4 419 50.6
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 9.7e-114 414.5 426 50.9
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 9.7e-114 414.5 410 53.7
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 9.7e-114 414.5 423 51.5
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 4.8e-113 412.1 425 51.1
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 4.8e-113 412.1 414 52.7
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 2.0e-111 406.8 427 50.4
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 1.0e-110 404.4 424 50.0
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 1.0e-107 394.4 443 48.3
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 1.7e-105 387.1 428 48.8
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 1.1e-104 384.4 421 48.7
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 1.4e-104 384.0 428 47.0
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 9.1e-104 381.3 387 51.7
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 1.6e-103 380.6 460 45.7
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 5.9e-103 378.6 425 48.7
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 7.7e-103 378.3 425 46.1
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 7.7e-103 378.3 427 47.8
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 7.7e-103 378.3 424 48.6
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 6.5e-102 375.2 421 46.3
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 1.9e-101 373.6 424 49.3
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 2.5e-101 373.2 423 44.9
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 3.2e-101 372.9 421 48.0
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 9.4e-101 371.3 427 47.1
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 1.6e-100 370.5 388 51.0
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 2.1e-100 370.2 425 45.9
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 4.7e-100 369.0 427 47.1
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 1.0e-99 367.9 423 50.6
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 4.0e-99 365.9 424 47.9
Dinv31876 Davidia involucrata HOM05D005393 ORTHO05D006257 8.8e-99 364.8 355 53.5
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 8.8e-99 364.8 426 44.4
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 1.2e-98 364.4 423 50.1
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 1.2e-98 364.4 418 46.9
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 3.4e-98 362.8 425 44.5
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 5.7e-98 362.1 420 47.4
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 9.7e-98 361.3 424 46.9
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 1.7e-97 360.5 423 45.6
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 4.8e-97 359.0 424 45.0
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 6.3e-97 358.6 419 46.8
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 6.3e-97 358.6 417 46.8
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 2.0e-95 353.6 429 45.9
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 2.7e-95 353.2 419 47.5
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 2.7e-95 353.2 419 47.5
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 1.0e-94 351.3 429 45.7
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 1.3e-94 350.9 380 49.2
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 2.9e-94 349.7 426 47.4
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 2.9e-94 349.7 460 43.7
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 8.5e-94 348.2 431 45.9
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 3.2e-93 346.3 439 47.6
Atru.chr13.247 Acer truncatum HOM05D005393 ORTHO05D006257 4.2e-93 345.9 375 46.7
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 7.2e-93 345.1 427 46.1
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 9.4e-93 344.7 464 43.8
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 9.4e-93 344.7 406 45.1
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 2.1e-92 343.6 426 44.1
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 3.6e-92 342.8 418 44.3
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 4.7e-92 342.4 421 43.2
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 4.7e-92 342.4 419 46.3
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 6.1e-92 342.0 410 46.3
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 6.1e-92 342.0 435 47.4
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 8.0e-92 341.7 432 44.9
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.3e-91 340.1 424 43.9
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 3.0e-91 339.7 425 44.0
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.2e-90 337.8 421 43.5
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 1.5e-90 337.4 412 43.9
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 5.7e-90 335.5 424 43.4
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 1.4e-88 330.9 429 43.1
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 1.8e-88 330.5 419 44.4
arahy.Tifrunner.gnm1.ann1.00YXRD Arachis hypogaea HOM05D005393 ORTHO05D006257 9.1e-88 328.2 423 46.1
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.0e-86 324.7 418 43.3
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.7e-86 323.9 396 47.7
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 4.7e-84 315.8 423 41.8
ECA233G5167 Erigeron canadensis HOM05D005393 ORTHO05D006257 3.7e-81 306.2 363 45.7
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.7e-81 306.2 418 41.9
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 4.9e-81 305.8 403 44.2
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 9.2e-80 301.6 426 42.3
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 4.5e-79 299.3 409 45.2
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 5.0e-78 295.8 404 42.6
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 1.0e-75 288.1 365 46.3
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 2.0e-74 283.9 334 47.0
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 2.0e-74 283.9 424 39.4
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 2.2e-73 280.4 424 38.7
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 1.9e-72 277.3 409 39.1
CDE05G3077 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 9.5e-69 265.0 369 37.4
CDE05G0353 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 8.3e-65 251.9 350 37.4
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 7.3e-61 238.8 211 56.4
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 1.8e-59 234.2 334 44.3
Os06g0724200 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 1.5e-58 231.1 414 35.5
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 2.5e-53 213.8 272 44.1
Zm00001eb272190 Zea mays HOM05D005393 ORTHO05D006257 1.7e-49 201.1 383 34.7
SEGI_40641 Sequoiadendron giganteum HOM05D005393 ORTHO05D006257 1.2e-47 194.9 428 32.0
Zm00001eb222750 Zea mays HOM05D005393 ORTHO05D006257 3.1e-43 180.3 466 28.8
Nn6g31969 Nelumbo nucifera HOM05D005393 ORTHO05D006257 2.9e-41 173.7 208 44.2
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 2.9e-41 173.7 156 55.8
C08p14400 Brassica napus HOM05D005393 ORTHO05D006257 8.4e-41 172.2 331 32.9
Mapoly0004s0136 Marchantia polymorpha HOM05D005393 ORTHO05D006257 2.3e-38 164.1 465 28.6
SMO141G0148 Selaginella moellendorffii HOM05D046829 ORTHO05D006257 8.7e-38 162.2 448 27.7
AagrBONN_evm.TU.Sc2ySwM_362.761 Anthoceros agrestis HOM05D005393 ORTHO05D006257 3.3e-37 160.2 432 28.7
Pp3c4_19410 Physcomitrium patens HOM05D005393 ORTHO05D006257 5.6e-37 159.5 482 26.8
PGSC0003DMG400027267 Solanum tuberosum HOM05D005393 ORTHO05D006257 6.9e-35 152.5 139 54.7
Os10g0438300 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 1.2e-34 151.8 388 29.4
Cpa.g.sc26.290 Carica papaya HOM05D005393 ORTHO05D006257 3.5e-31 140.2 181 38.1
AagrBONN_evm.TU.Sc2ySwM_362.762 Anthoceros agrestis HOM05D005393 ORTHO05D006257 1.0e-30 138.7 433 28.2
Pp3c3_18780 Physcomitrium patens HOM05D005393 ORTHO05D006257 4.8e-28 129.8 238 33.2
BcaB03g13262 Brassica carinata HOM05D005393 ORTHO05D006257 4.0e-27 126.7 421 24.9
Pp3c26_6520 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.2e-23 115.2 230 32.2
TPR.G21884 Trifolium pratense HOM05D005393 ORTHO05D006257 6.9e-19 99.4 86 53.5
CBR_g46669 Chara braunii HOM05D000019 ORTHO05D000002 7.6e-18 95.9 215 29.8
TPR.G684 Trifolium pratense HOM05D005393 ORTHO05D006257 4.6e-15 86.7 76 52.6
MD15G1008500 Malus domestica HOM05D005393 ORTHO05D006257 1.1e-11 75.5 62 48.4
FAN11G0106 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.6e-10 70.9 229 28.4
BcaB08g37392 Brassica carinata HOM05D000013 ORTHO05D000011 4.5e-10 70.1 208 29.3
TPR.G890 Trifolium pratense HOM05D005393 ORTHO05D006257 1.9e-08 64.7 61 49.2
FAN16G0769 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.5e-08 64.3 59 55.9
FAN16G3589 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.0e-06 58.9 97 38.1


User provided reference genes

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