Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.C00595 Erythranthe guttata HOM05D002103 ORTHO05D004020 2.2e-116 422.2 197 100.0
Migut.N02702 Erythranthe guttata HOM05D002103 ORTHO05D004020 1.5e-88 329.7 196 75.5
SalBow3G3013 Salvia bowleyana HOM05D002103 ORTHO05D004020 4.4e-88 328.2 198 74.7
MSTRG.24326 Avicennia marina HOM05D002103 ORTHO05D004020 2.9e-87 325.5 196 76.0
Oeu009550.1 Olea europaea HOM05D002103 ORTHO05D004020 2.9e-87 325.5 196 76.0
SGA_v2.0_scaffold14G07034 Striga asiatica HOM05D002103 ORTHO05D004020 2.9e-87 325.5 196 75.5
Nitab4.5_0004897g0010 Nicotiana tabacum HOM05D002103 ORTHO05D004020 7.8e-85 317.4 196 72.4
Sopen04g032770 Solanum pennellii HOM05D002103 ORTHO05D004020 3.0e-84 315.5 198 71.2
Nitab4.5_0000686g0060 Nicotiana tabacum HOM05D002103 ORTHO05D004020 3.9e-84 315.1 198 71.2
Solyc04g079160.4 Solanum lycopersicum HOM05D002103 ORTHO05D004020 3.9e-84 315.1 198 71.7
PGSC0003DMG400007986 Solanum tuberosum HOM05D002103 ORTHO05D004020 3.9e-84 315.1 198 70.7
SalBow7G3772 Salvia bowleyana HOM05D002103 ORTHO05D004020 5.1e-84 314.7 218 67.4
Cc10_g04320 Coffea canephora HOM05D002103 ORTHO05D004020 1.1e-83 313.5 199 70.9
Dinv39328 Davidia involucrata HOM05D002103 ORTHO05D004020 1.1e-83 313.5 196 72.4
Nitab4.5_0001101g0080 Nicotiana tabacum HOM05D002103 ORTHO05D004020 3.3e-83 312.0 196 70.4
Lj4A775T63 Lonicera japonica HOM05D002103 ORTHO05D004020 4.3e-83 311.6 196 72.4
Peaxi162Scf00929g00314 Petunia axillaris HOM05D002103 ORTHO05D004020 4.3e-83 311.6 198 70.7
Manes.05G171920 Manihot esculenta HOM05D002103 ORTHO05D004020 9.5e-83 310.5 196 73.0
Manes.05G172000 Manihot esculenta HOM05D002103 ORTHO05D004020 9.5e-83 310.5 196 73.0
DCAR_019463 Daucus carota HOM05D002103 ORTHO05D004020 1.2e-82 310.1 194 70.6
Eucgr.F00240 Eucalyptus grandis HOM05D002103 ORTHO05D004020 1.6e-82 309.7 198 69.7
Potri.002G127700 Populus trichocarpa HOM05D002103 ORTHO05D004020 2.1e-82 309.3 199 73.4
Sopen07g013400 Solanum pennellii HOM05D002103 ORTHO05D004020 2.1e-82 309.3 198 70.2
CSS0022390 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D004020 6.2e-82 307.8 196 70.9
CSS0022665 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D004020 6.2e-82 307.8 196 70.9
Nitab4.5_0001024g0020 Nicotiana tabacum HOM05D002103 ORTHO05D004020 6.2e-82 307.8 192 70.8
Peaxi162Scf00528g00417 Petunia axillaris HOM05D002103 ORTHO05D004020 8.1e-82 307.4 198 68.2
Gohir.A06G017200 Gossypium hirsutum HOM05D002103 ORTHO05D004020 1.1e-81 307.0 197 71.1
Potri.014G031900 Populus trichocarpa HOM05D002103 ORTHO05D004020 1.8e-81 306.2 199 71.4
PGSC0003DMG400041182 Solanum tuberosum HOM05D002103 ORTHO05D004020 1.8e-81 306.2 198 69.7
CAN.G371.35 Capsicum annuum HOM05D002103 ORTHO05D004020 3.1e-81 305.4 198 69.2
Hma1.2p1_0982F.1_g243900 Hydrangea macrophylla HOM05D002103 ORTHO05D004020 3.1e-81 305.4 207 67.1
Dinv35973 Davidia involucrata HOM05D002103 ORTHO05D004020 5.2e-81 304.7 192 72.4
Sabra02G0100000 Salix brachista HOM05D002103 ORTHO05D004020 1.5e-80 303.1 198 72.2
Nn5g30229 Nelumbo nucifera HOM05D002103 ORTHO05D004020 2.0e-80 302.8 198 70.7
CiPaw.16G045800 Carya illinoinensis HOM05D002103 ORTHO05D004020 2.6e-80 302.4 198 70.2
Rhsim06G0048300 Rhododendron simsii HOM05D002103 ORTHO05D004020 4.4e-80 301.6 196 69.4
HanXRQChr02g0037661 Helianthus annuus HOM05D002103 ORTHO05D004020 5.8e-80 301.2 193 68.4
ECA246G3192 Erigeron canadensis HOM05D002103 ORTHO05D004020 7.5e-80 300.8 196 68.9
Gohir.D06G015300 Gossypium hirsutum HOM05D002103 ORTHO05D004020 7.5e-80 300.8 197 69.0
Manes.18G032500 Manihot esculenta HOM05D002103 ORTHO05D004020 7.5e-80 300.8 197 72.1
Actinidia23265 Actinidia chinensis HOM05D002103 ORTHO05D004020 1.3e-79 300.1 195 69.7
Gorai.010G018100 Gossypium raimondii HOM05D002103 ORTHO05D004020 1.7e-79 299.7 197 69.5
TWI36G1154 Tripterygium wilfordii HOM05D002103 ORTHO05D004020 1.7e-79 299.7 197 71.6
vmacro21537 Vaccinium macrocarpon HOM05D002103 ORTHO05D004020 1.7e-79 299.7 196 67.9
TWI56G0490 Tripterygium wilfordii HOM05D002103 ORTHO05D004020 2.2e-79 299.3 197 71.6
Atru.chr13.650 Acer truncatum HOM05D002103 ORTHO05D004020 2.9e-79 298.9 198 70.7
GSVIVG01009523001 Vitis vinifera HOM05D002103 ORTHO05D004020 8.3e-79 297.4 196 68.9
CANSAT01G2416 Cannabis sativa HOM05D002103 ORTHO05D004020 1.2e-77 293.5 196 70.4
PGR083G1022 Punica granatum HOM05D002103 ORTHO05D004020 2.7e-77 292.4 197 68.0
Duzib041G0561 Durio zibethinus HOM05D002103 ORTHO05D004020 3.5e-77 292.0 195 69.7
ECA247G1496 Erigeron canadensis HOM05D002103 ORTHO05D004020 3.5e-77 292.0 194 66.0
MD08G1103400 Malus domestica HOM05D002103 ORTHO05D004020 6.0e-77 291.2 197 69.0
COL.COLO4_26478 Corchorus olitorius HOM05D002103 ORTHO05D004020 7.8e-77 290.8 199 68.3
CiPaw.15G061600 Carya illinoinensis HOM05D002103 ORTHO05D004020 1.7e-76 289.7 196 69.9
arahy.Tifrunner.gnm1.ann1.3IZ1KA Arachis hypogaea HOM05D002103 ORTHO05D004020 2.3e-76 289.3 197 70.1
arahy.Tifrunner.gnm1.ann1.II6H71 Arachis hypogaea HOM05D002103 ORTHO05D004020 2.3e-76 289.3 197 70.1
arahy.Tifrunner.gnm1.ann1.YT15EQ Arachis hypogaea HOM05D002103 ORTHO05D004020 2.3e-76 289.3 197 70.1
Duzib116G0153 Durio zibethinus HOM05D002103 ORTHO05D004020 2.3e-76 289.3 199 66.8
Lsat_1_v5_gn_1_20261 Lactuca sativa HOM05D002103 ORTHO05D004020 3.0e-76 288.9 198 66.2
AL7G18190 Arabidopsis lyrata HOM05D002103 ORTHO05D004020 3.9e-76 288.5 196 67.9
Cfa018527 Carpinus fangiana HOM05D002103 ORTHO05D004020 3.9e-76 288.5 191 68.6
ClCG08G015730 Citrullus lanatus HOM05D002103 ORTHO05D004020 5.1e-76 288.1 197 67.0
MELO3C010883.2 Cucumis melo HOM05D002103 ORTHO05D004020 5.1e-76 288.1 197 67.0
Sp7g31080 Schrenkiella parvula HOM05D002103 ORTHO05D004020 5.1e-76 288.1 196 68.4
TAR625G1123 Trochodendron aralioides HOM05D002103 ORTHO05D004020 5.1e-76 288.1 197 69.0
AT4G33380 Arabidopsis thaliana HOM05D002103 ORTHO05D004020 6.6e-76 287.7 196 68.4
Duzib093G0320 Durio zibethinus HOM05D002103 ORTHO05D004020 6.6e-76 287.7 198 69.2
Sed0003893 Sechium edule HOM05D002103 ORTHO05D004020 8.6e-76 287.3 196 64.8
Sed0011304 Sechium edule HOM05D002103 ORTHO05D004020 8.6e-76 287.3 197 67.5
Carub.0007s0711 Capsella rubella HOM05D002103 ORTHO05D004020 1.1e-75 287.0 195 67.7
CARHR241420 Cardamine hirsuta HOM05D002103 ORTHO05D004020 1.9e-75 286.2 196 67.3
Glyma.06G038500 Glycine max HOM05D002103 ORTHO05D004020 1.9e-75 286.2 194 68.0
Lsat_1_v5_gn_6_113661 Lactuca sativa HOM05D002103 ORTHO05D004020 1.9e-75 286.2 194 66.5
Lj5g0018432 Lotus japonicus HOM05D002103 ORTHO05D004020 1.9e-75 286.2 197 67.5
QL02p005379 Quercus lobata HOM05D002103 ORTHO05D004020 1.9e-75 286.2 198 66.2
Thecc.08G010900 Theobroma cacao HOM05D002103 ORTHO05D004020 2.5e-75 285.8 198 69.2
Glyma.04G037600 Glycine max HOM05D002103 ORTHO05D004020 3.3e-75 285.4 194 68.0
A08p17650 Brassica napus HOM05D002103 ORTHO05D004020 1.2e-74 283.5 194 68.6
Ciclev10001804m.g Citrus clementina HOM05D002103 ORTHO05D004020 1.2e-74 283.5 199 65.8
Prupe.1G438400 Prunus persica HOM05D002103 ORTHO05D004020 1.2e-74 283.5 197 67.5
CsaV3_2G028030 Cucumis sativus L. HOM05D002103 ORTHO05D004020 2.1e-74 282.7 197 66.0
MD15G1084700 Malus domestica HOM05D002103 ORTHO05D004020 2.1e-74 282.7 195 68.7
Psat6g012640 Pisum sativum HOM05D002103 ORTHO05D004020 2.1e-74 282.7 196 66.8
BcaC01g00993 Brassica carinata HOM05D002103 ORTHO05D004020 2.8e-74 282.3 194 68.6
C03p86710 Brassica napus HOM05D002103 ORTHO05D004020 2.8e-74 282.3 194 68.6
BolC1t00510H Brassica oleracea HOM05D002103 ORTHO05D004020 2.8e-74 282.3 196 66.8
BolC3t20967H Brassica oleracea HOM05D002103 ORTHO05D004020 2.8e-74 282.3 194 68.6
BraA08t33716Z Brassica rapa HOM05D002103 ORTHO05D004020 3.6e-74 282.0 194 68.0
Thhalv10025691m.g Eutrema salsugineum HOM05D002103 ORTHO05D004020 3.6e-74 282.0 196 66.8
Medtr1g019780 Medicago truncatula HOM05D002103 ORTHO05D004020 3.6e-74 282.0 198 67.2
Phvul.009G063800 Phaseolus vulgaris HOM05D002103 ORTHO05D004020 3.6e-74 282.0 194 68.0
VMungo0647G0899 Vigna mungo HOM05D002103 ORTHO05D004020 4.7e-74 281.6 196 65.8
Atru.chr11.91 Acer truncatum HOM05D002103 ORTHO05D004020 6.2e-74 281.2 195 67.7
BcaB03g12802 Brassica carinata HOM05D002103 ORTHO05D004020 8.1e-74 280.8 194 67.5
BolC3t20965H Brassica oleracea HOM05D002103 ORTHO05D004020 8.1e-74 280.8 194 67.5
Phvul.001G021000 Phaseolus vulgaris HOM05D002103 ORTHO05D004020 8.1e-74 280.8 196 65.8
Nn1g05835 Nelumbo nucifera HOM05D002103 ORTHO05D004020 1.4e-73 280.0 197 68.0
Lalb_Chr23g0266991 Lupinus albus HOM05D002103 ORTHO05D004020 2.4e-73 279.3 196 66.3
VMungo1309G0516 Vigna mungo HOM05D002103 ORTHO05D004020 3.1e-73 278.9 192 66.7
Glyma.14G082000 Glycine max HOM05D002103 ORTHO05D004020 6.8e-73 277.7 196 66.3
arahy.Tifrunner.gnm1.ann1.75Q1P4 Arachis hypogaea HOM05D002103 ORTHO05D004020 8.9e-73 277.3 194 65.5
arahy.Tifrunner.gnm1.ann1.Z2DAXP Arachis hypogaea HOM05D002103 ORTHO05D004020 1.2e-72 276.9 192 65.6
Medtr3g101480 Medicago truncatula HOM05D002103 ORTHO05D004020 1.2e-72 276.9 194 66.5
THA.LOC104803681 Tarenaya hassleriana HOM05D002103 ORTHO05D004020 1.5e-72 276.6 196 66.8
BraA01t00472Z Brassica rapa HOM05D002198 ORTHO05D004020 2.0e-72 276.2 190 66.8
Sc02g0007040 Simmondsia chinensis HOM05D002103 ORTHO05D004020 5.8e-72 274.6 193 65.3
Lj4A54G47 Lonicera japonica HOM05D002103 ORTHO05D004020 7.6e-72 274.2 196 62.8
Ah.05g168830 Amaranthus hybridus HOM05D002103 ORTHO05D004020 3.8e-71 271.9 197 64.5
RcHm_v2.0_Chr6g0307681 Rosa chinensis HOM05D002103 ORTHO05D004020 3.8e-71 271.9 193 65.8
TPR.G35873 Trifolium pratense HOM05D002103 ORTHO05D004020 3.8e-71 271.9 194 64.4
BcaC09g52142 Brassica carinata HOM05D002103 ORTHO05D004020 6.4e-71 271.2 189 65.1
Hund17586 Selenicereus undatus HOM05D002103 ORTHO05D004020 1.1e-70 270.4 197 65.5
Glyma.17G243300 Glycine max HOM05D002103 ORTHO05D004020 1.9e-70 269.6 196 64.3
Lalb_Chr14g0368771 Lupinus albus HOM05D002103 ORTHO05D004020 1.9e-70 269.6 195 68.2
AUR62022428 Chenopodium quinoa HOM05D002103 ORTHO05D004020 3.2e-70 268.9 197 62.4
Manes.05G171940 Manihot esculenta HOM05D002103 ORTHO05D004020 5.4e-70 268.1 174 70.7
AUR62039305 Chenopodium quinoa HOM05D002103 ORTHO05D004020 7.1e-70 267.7 197 61.9
Haze_17544 Corylus avellana HOM05D002103 ORTHO05D004020 7.1e-70 267.7 163 70.6
A01p04900 Brassica napus HOM05D002198 ORTHO05D004020 9.3e-70 267.3 214 59.8
Gorai.002G131200 Gossypium raimondii HOM05D002103 ORTHO05D004020 9.3e-70 267.3 199 64.8
Haze_17553 Corylus avellana HOM05D002103 ORTHO05D004020 1.2e-69 266.9 163 70.6
FAN15G2894 Fragaria x ananassa HOM05D002103 ORTHO05D004020 1.2e-69 266.9 196 63.3
FAN20G2977 Fragaria x ananassa HOM05D002103 ORTHO05D004020 1.2e-69 266.9 194 64.4
Gohir.A01G118700 Gossypium hirsutum HOM05D002103 ORTHO05D004020 1.2e-69 266.9 199 64.8
Gohir.D01G106900 Gossypium hirsutum HOM05D002103 ORTHO05D004020 1.2e-69 266.9 199 64.8
Lalb_Chr22g0355191 Lupinus albus HOM05D002103 ORTHO05D004020 1.6e-69 266.5 196 65.8
Psat0s3123g0080 Pisum sativum HOM05D002103 ORTHO05D004020 1.6e-69 266.5 197 63.5
FvH4_2g34620 Fragaria vesca HOM05D002103 ORTHO05D004020 2.1e-69 266.2 194 63.9
Os02g0761600 Oryza sativa ssp. japonica HOM05D002103 ORTHO05D004020 4.6e-69 265.0 198 64.1
FAN27G3124 Fragaria x ananassa HOM05D002103 ORTHO05D004020 2.3e-68 262.7 194 62.9
MBI02_g17341_MAGBIO Magnolia biondii HOM05D002103 ORTHO05D004020 1.5e-67 260.0 194 62.4
Os06g0214100 Oryza sativa ssp. japonica HOM05D002103 ORTHO05D004020 2.5e-67 259.2 195 60.0
BcaC09g52145 Brassica carinata HOM05D002103 ORTHO05D004020 4.3e-67 258.5 180 66.1
CDE02G4038 Ceratophyllum demersum HOM05D002103 ORTHO05D004020 1.6e-66 256.5 173 65.9
Aqoxy6G01360 Aquilegia oxysepala HOM05D002103 ORTHO05D004020 2.8e-66 255.8 196 59.2
Zm00001eb373130 Zea mays HOM05D002103 ORTHO05D004020 3.1e-65 252.3 195 57.9
arahy.Tifrunner.gnm1.ann1.S2AHNK Arachis hypogaea HOM05D002103 ORTHO05D004020 4.0e-65 251.9 197 60.9
arahy.Tifrunner.gnm1.ann1.VN362G Arachis hypogaea HOM05D002103 ORTHO05D004020 4.0e-65 251.9 197 60.9
TAR381G0883 Trochodendron aralioides HOM05D002103 ORTHO05D004020 5.8e-64 248.1 160 71.2
CAN.G52.6 Capsicum annuum HOM05D002103 ORTHO05D004020 3.2e-62 242.3 161 67.1
PSO541G4087 Papaver somniferum HOM05D002103 ORTHO05D004020 1.2e-61 240.4 195 57.4
PSO675G6562 Papaver somniferum HOM05D002103 ORTHO05D004020 1.6e-61 240.0 202 56.4
Zm00001eb255700 Zea mays HOM05D002103 ORTHO05D004020 7.8e-61 237.7 195 59.0
HPP92_027223 Vanilla planifolia HOM05D002103 ORTHO05D004020 1.0e-60 237.3 194 55.7
ATR0100G056 Amborella trichopoda HOM05D002103 ORTHO05D004020 1.7e-60 236.5 189 60.3
SEGI_41572 Sequoiadendron giganteum HOM05D002103 ORTHO05D004020 3.0e-60 235.7 197 58.4
CSS0001953 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D004020 1.5e-59 233.4 198 59.1
Zm00001eb279800 Zea mays HOM05D002103 ORTHO05D004020 7.3e-59 231.1 175 60.6
RcHm_v2.0_Chr6g0307521 Rosa chinensis HOM05D002103 ORTHO05D004020 1.3e-55 220.3 164 64.0
Actinidia22618 Actinidia chinensis HOM05D002103 ORTHO05D004020 4.2e-54 215.3 119 77.3
Aa31LG3G7420 Aethionema arabicum HOM05D002103 ORTHO05D004020 2.3e-52 209.5 196 55.6
Pp3c12_23290 Physcomitrium patens HOM05D002103 ORTHO05D004020 9.6e-51 204.1 192 51.6
TPR.G13687 Trifolium pratense HOM05D002103 ORTHO05D004020 2.1e-50 203.0 244 44.7
Pp3c19_17840 Physcomitrium patens HOM05D002103 ORTHO05D004020 2.4e-49 199.5 197 49.2
SMO271G0137 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 2.4e-49 199.5 205 48.8
SMO308G0045 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 2.0e-48 196.4 211 45.0
AagrBONN_evm.TU.Sc2ySwM_228.3673 Anthoceros agrestis HOM05D002103 ORTHO05D004020 8.4e-47 191.0 193 48.7
Psat3g152440 Pisum sativum HOM05D002103 ORTHO05D004020 2.7e-45 186.0 155 56.1
Psat7g222680 Pisum sativum HOM05D002103 ORTHO05D004020 1.9e-43 179.9 117 65.8
AagrBONN_evm.TU.Sc2ySwM_362.2117 Anthoceros agrestis HOM05D002103 ORTHO05D004020 2.0e-40 169.9 117 62.4
Oeu006152.1 Olea europaea HOM05D002103 ORTHO05D004020 1.5e-35 153.7 83 80.7
RcHm_v2.0_Chr6g0258511 Rosa chinensis HOM05D002103 ORTHO05D004020 2.6e-32 142.9 158 48.7
Pp3c27_1800 Physcomitrium patens HOM05D002103 ORTHO05D004020 2.3e-28 129.8 151 44.4
Lj3A736T18 Lonicera japonica HOM05D002103 ORTHO05D004020 2.0e-27 126.7 111 54.1
Pp3c5_13510 Physcomitrium patens HOM05D002103 ORTHO05D004020 4.1e-25 119.0 148 41.2
unitig_61.g26339 Utricularia gibba HOM05D002103 ORTHO05D004020 1.5e-24 117.1 75 72.0
A03p61950 Brassica napus HOM05D002198 ORTHO05D002409 2.9e-23 112.8 143 46.9
MCO11G730 Micromonas commoda HOM05D002103 ORTHO05D004020 2.5e-22 109.8 118 40.7
MCO12G397 Micromonas commoda HOM05D002103 ORTHO05D004020 2.5e-22 109.8 120 42.5
PRCOL_00001864 Prasinoderma coloniale HOM05D002103 ORTHO05D004020 1.0e-20 104.4 124 41.1
Cre03.g165350 Chlamydomonas reinhardtii HOM05D002103 ORTHO05D004020 8.8e-20 101.3 145 37.9
Cre10.g444750 Chlamydomonas reinhardtii HOM05D002103 ORTHO05D004020 2.6e-19 99.8 140 33.6
MSTRG.22266 Avicennia marina HOM05D002103 ORTHO05D004020 2.8e-18 96.3 71 66.2
BraA03t15234Z Brassica rapa HOM05D002103 ORTHO05D004020 1.1e-17 94.4 107 46.7
PRCOL_00003789 Prasinoderma coloniale HOM05D002103 ORTHO05D004020 1.8e-17 93.6 112 39.3
MCO03G389 Micromonas commoda HOM05D002103 ORTHO05D004020 1.2e-16 90.9 123 37.4
unitig_61.g26338 Utricularia gibba HOM05D000186 ORTHO05D017738 2.6e-16 89.7 46 80.4
SMO271G0025 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 5.9e-16 88.6 63 60.3
Prupe.3G111800 Prunus persica HOM05D002103 ORTHO05D004020 1.0e-12 77.8 48 62.5
PRCOL_00001236 Prasinoderma coloniale HOM05D001570 ORTHO05D001566 1.3e-10 70.9 80 43.8
Pp3c22_5260 Physcomitrium patens HOM05D002103 ORTHO05D004020 2.2e-10 70.1 99 35.4


User provided reference genes

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