Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 0.0e+00 1124.8 559 100.0
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 9.1e-280 966.5 559 85.3
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 5.9e-279 963.8 559 84.4
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 7.7e-263 910.2 559 79.6
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 2.7e-260 901.7 559 79.2
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 6.8e-259 897.1 559 79.2
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 1.2e-258 896.3 557 78.8
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 2.0e-258 895.6 557 77.6
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 9.8e-258 893.3 559 78.4
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 2.2e-257 892.1 557 77.7
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 2.8e-257 891.7 559 77.3
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 3.7e-257 891.3 557 78.3
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 4.8e-257 891.0 559 78.0
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 4.8e-257 891.0 557 77.4
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 6.3e-257 890.6 559 77.3
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 8.3e-257 890.2 557 78.3
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 1.4e-256 889.4 560 77.5
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 2.4e-256 888.6 558 76.5
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 2.4e-256 888.6 556 76.8
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 2.4e-256 888.6 560 77.5
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 4.1e-256 887.9 557 77.9
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 9.1e-256 886.7 558 76.3
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 1.2e-255 886.3 553 78.7
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 1.2e-255 886.3 557 77.9
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 1.2e-255 886.3 559 77.5
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 5.9e-255 884.0 560 77.9
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 1.0e-254 883.2 578 75.3
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 1.3e-254 882.9 557 76.7
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 5.0e-254 880.9 560 77.0
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 6.5e-254 880.6 559 76.9
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 1.9e-253 879.0 532 82.0
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 5.5e-253 877.5 557 76.3
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 9.5e-253 876.7 553 78.1
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 9.5e-253 876.7 557 76.8
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 9.5e-253 876.7 557 76.5
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 9.5e-253 876.7 576 75.5
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 9.5e-253 876.7 557 76.1
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 1.2e-252 876.3 559 77.3
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 2.8e-252 875.2 557 75.8
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 3.6e-252 874.8 553 76.3
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 4.7e-252 874.4 557 76.7
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 1.4e-251 872.8 548 77.0
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 1.4e-251 872.8 560 75.9
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 1.8e-251 872.5 557 76.1
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 3.0e-251 871.7 557 76.5
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 3.0e-251 871.7 558 76.5
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 4.0e-251 871.3 555 75.5
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 4.0e-251 871.3 559 75.5
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 5.2e-251 870.9 555 78.7
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 6.8e-251 870.5 525 81.0
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 1.2e-250 869.8 558 75.6
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 1.5e-250 869.4 557 75.4
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 5.7e-250 867.5 555 76.6
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 5.7e-250 867.5 565 75.2
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 2.8e-249 865.1 559 75.7
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 2.8e-249 865.1 558 75.4
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 3.7e-249 864.8 557 75.4
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 1.8e-248 862.4 559 74.4
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 2.4e-248 862.1 557 75.0
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 3.1e-248 861.7 556 75.2
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 3.1e-248 861.7 553 75.4
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 4.1e-248 861.3 558 74.6
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 5.4e-248 860.9 537 78.0
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 5.4e-248 860.9 557 75.2
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 1.2e-247 859.8 557 74.1
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 2.0e-247 859.0 557 76.5
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 2.7e-247 858.6 557 75.0
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.7e-247 858.6 584 72.8
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 1.0e-246 856.7 559 75.3
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 1.7e-246 855.9 557 76.1
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 1.7e-246 855.9 560 74.8
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 1.7e-246 855.9 575 73.7
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 1.5e-245 852.8 557 75.9
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 5.6e-245 850.9 559 74.4
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.6e-244 849.4 559 74.2
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.6e-244 849.4 559 74.2
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.6e-244 849.4 559 74.2
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 8.0e-244 847.0 559 74.4
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 8.0e-244 847.0 559 73.7
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 1.0e-243 846.7 560 73.9
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 1.0e-243 846.7 557 74.3
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 2.3e-243 845.5 560 74.3
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 4.0e-243 844.7 559 73.9
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 4.0e-243 844.7 560 73.4
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 2.0e-242 842.4 559 73.5
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 5.8e-242 840.9 564 73.4
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 7.5e-242 840.5 560 73.6
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 9.8e-242 840.1 538 75.8
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 9.8e-242 840.1 542 75.8
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 1.3e-241 839.7 565 72.9
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 2.4e-240 835.5 557 73.2
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 1.2e-239 833.2 577 71.1
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 4.6e-239 831.2 565 72.2
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 1.0e-238 830.1 557 72.7
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 6.6e-238 827.4 559 73.3
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 8.6e-238 827.0 515 78.3
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 6.2e-236 820.8 561 72.2
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 3.1e-235 818.5 572 71.9
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 5.2e-235 817.8 551 71.9
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 5.2e-235 817.8 560 71.4
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 7.0e-232 807.4 600 69.0
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.7e-231 805.4 600 68.3
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 4.3e-229 798.1 561 72.7
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 1.6e-228 796.2 542 72.3
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 2.8e-228 795.4 552 71.2
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 4.7e-228 794.7 553 71.2
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 1.8e-227 792.7 557 69.8
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 1.7e-225 786.2 565 69.2
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 2.1e-220 769.2 545 70.5
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 2.8e-220 768.8 562 69.2
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 1.8e-219 766.1 548 67.0
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 6.8e-219 764.2 490 75.5
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 3.8e-217 758.4 557 69.1
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 1.1e-216 756.9 490 74.3
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 7.8e-215 750.7 557 65.7
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 5.1e-214 748.0 545 69.0
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 2.6e-210 735.7 447 78.7
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 2.1e-207 726.1 558 63.8
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 9.6e-205 717.2 549 62.1
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 6.7e-198 694.5 565 63.5
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 9.7e-181 637.5 391 78.8
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 6.3e-180 634.8 548 55.5
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 5.9e-178 628.2 433 71.4
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 1.0e-177 627.5 391 76.5
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 8.5e-177 624.4 544 58.1
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 6.9e-171 604.7 391 74.4
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 3.2e-168 595.9 553 56.1
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 3.6e-159 565.8 549 53.0
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 3.0e-158 562.8 484 55.6
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 3.9e-158 562.4 322 82.3
Oeu034830.1 Olea europaea HOM05D001656 ORTHO05D005043 2.7e-146 523.1 308 84.1
unitig_736.g22951 Utricularia gibba HOM05D001656 ORTHO05D005043 5.0e-137 492.3 323 74.0
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 8.0e-135 485.0 290 79.0
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 5.2e-134 482.3 336 71.1
CARHR293240 Cardamine hirsuta HOM05D001656 ORTHO05D005043 1.8e-131 473.8 320 71.2
Oeu035949.1 Olea europaea HOM05D001656 ORTHO05D005043 1.2e-125 454.5 270 82.6
AUR62034953 Chenopodium quinoa HOM05D001656 ORTHO05D005043 5.2e-118 429.1 292 70.2
Oeu011631.2 Olea europaea HOM05D001656 ORTHO05D005043 1.7e-108 397.5 239 83.3
HPP92_028451 Vanilla planifolia HOM05D001656 ORTHO05D005043 3.7e-108 396.4 274 70.4
SpUn0078_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.1e-102 378.3 246 75.2
HPP92_019867 Vanilla planifolia HOM05D001656 ORTHO05D005043 2.6e-93 347.1 236 74.6
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 1.9e-88 330.9 240 70.4
CBR_g40751 Chara braunii HOM05D001656 ORTHO05D005043 3.3e-80 303.5 263 58.2
unitig_736.g22950 Utricularia gibba HOM05D001656 ORTHO05D005043 3.9e-57 226.9 140 80.7
Gorai.010G169800 Gossypium raimondii HOM05D001656 ORTHO05D005043 5.3e-54 216.5 138 75.4
Gohir.D06G145701 Gossypium hirsutum HOM05D001656 ORTHO05D005043 9.1e-54 215.7 137 75.2
Gorai.013G041400 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.2e-53 215.3 139 74.8
Atru.chr7.541 Acer truncatum HOM05D001656 ORTHO05D005043 1.5e-53 214.9 180 62.2
Gohir.D13G037000 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.5e-53 214.9 139 74.8
Gorai.010G172000 Gossypium raimondii HOM05D001656 ORTHO05D005043 4.8e-47 193.4 128 74.2
Dinv26408 Davidia involucrata HOM05D001656 ORTHO05D005043 5.3e-38 163.3 98 79.6
Dinv14696 Davidia involucrata HOM05D001656 ORTHO05D005043 2.9e-36 157.5 121 64.5
Atru.chr13.2595 Acer truncatum HOM05D001656 ORTHO05D005043 1.6e-26 125.2 105 61.9
Cc01_g04230 Coffea canephora HOM05D001656 ORTHO05D005043 9.8e-24 115.9 63 81.0
Cc04_g15120 Coffea canephora HOM05D001656 ORTHO05D005043 1.3e-23 115.5 63 81.0
Cc11_g07750 Coffea canephora HOM05D001656 ORTHO05D005043 6.3e-23 113.2 71 70.4
Cc02_g27750 Coffea canephora HOM05D001656 ORTHO05D005043 3.1e-22 110.9 63 77.8
HanXRQChr08g0210401 Helianthus annuus HOM05D001656 ORTHO05D005043 1.0e-20 105.9 57 77.2
Gorai.004G152700 Gossypium raimondii HOM05D001656 ORTHO05D005043 3.6e-18 97.4 63 71.4
Gohir.D08G147150 Gossypium hirsutum HOM05D001656 ORTHO05D005043 4.7e-18 97.1 63 71.4
CBR_g50937 Chara braunii HOM05D001656 ORTHO05D005043 5.2e-17 93.6 245 28.2
Cc08_g09760 Coffea canephora HOM05D001656 ORTHO05D005043 2.6e-16 91.3 54 75.9
MCO10G102 Micromonas commoda HOM05D001656 ORTHO05D014814 1.8e-14 85.1 495 23.4
ECA247G1681 Erigeron canadensis HOM05D000257 ORTHO05D008527 1.0e-12 79.3 62 59.7
Cre07.g321100 Chlamydomonas reinhardtii HOM05D001656 ORTHO05D014814 1.7e-12 78.6 489 22.9
RcHm_v2.0_Chr2g0168121 Rosa chinensis HOM05D004344 ORTHO05D021344 2.8e-10 71.2 54 59.3
PRCOL_00006907 Prasinoderma coloniale HOM05D013921 ORTHO05D014814 8.3e-07 59.7 530 21.5
FvH4_5g33600 Fragaria vesca HOM05D001656 ORTHO05D005043 4.1e-06 57.4 49 59.2
FAN18G3130 Fragaria x ananassa HOM05D001656 ORTHO05D005043 4.1e-06 57.4 49 59.2


User provided reference genes

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