Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.C00377 Erythranthe guttata HOM05D001775 ORTHO05D006205 2.6e-97 358.6 168 100.0
SGA_v2.0_scaffold133G34600 Striga asiatica HOM05D001775 ORTHO05D006205 1.5e-65 253.1 169 68.0
SalBow7G0166 Salvia bowleyana HOM05D001775 ORTHO05D006205 7.6e-65 250.8 168 66.1
MSTRG.24916 Avicennia marina HOM05D001775 ORTHO05D006205 3.3e-60 235.3 168 61.9
CiPaw.07G134900 Carya illinoinensis HOM05D001775 ORTHO05D006205 3.3e-60 235.3 168 63.1
MD06G1005500 Malus domestica HOM05D001775 ORTHO05D006205 4.8e-59 231.5 168 61.9
Ciclev10002700m.g Citrus clementina HOM05D001775 ORTHO05D006205 3.1e-58 228.8 168 61.3
QL02p015365 Quercus lobata HOM05D001775 ORTHO05D006205 4.1e-58 228.4 167 59.3
QL02p015396 Quercus lobata HOM05D001775 ORTHO05D006205 4.1e-58 228.4 167 59.3
Hma1.2p1_0612F.1_g189000 Hydrangea macrophylla HOM05D001775 ORTHO05D006205 1.2e-57 226.9 169 60.4
DCAR_016792 Daucus carota HOM05D001775 ORTHO05D006205 4.5e-57 224.9 168 61.3
CSS0024195 Camellia sinensis var. sinensis HOM05D001775 ORTHO05D006205 5.9e-57 224.6 168 59.5
Actinidia15517 Actinidia chinensis HOM05D001775 ORTHO05D006205 7.7e-57 224.2 167 58.7
Manes.18G002900 Manihot esculenta HOM05D001775 ORTHO05D006205 1.0e-56 223.8 168 60.7
Oeu019572.1 Olea europaea HOM05D001775 ORTHO05D006205 1.0e-56 223.8 170 61.2
unitig_0.g2075 Utricularia gibba HOM05D001775 ORTHO05D006205 1.7e-56 223.0 190 54.7
Eucgr.F01803 Eucalyptus grandis HOM05D001775 ORTHO05D006205 2.9e-56 222.2 168 58.3
Prupe.5G006800 Prunus persica HOM05D001775 ORTHO05D006205 6.5e-56 221.1 163 60.7
Cfa014124 Carpinus fangiana HOM05D001775 ORTHO05D006205 1.9e-55 219.5 168 57.7
Sed0015170 Sechium edule HOM05D001775 ORTHO05D006205 1.9e-55 219.5 168 57.1
GSVIVG01013411001 Vitis vinifera HOM05D001775 ORTHO05D006205 2.5e-55 219.2 168 57.7
FAN04G1208 Fragaria x ananassa HOM05D001775 ORTHO05D006205 4.2e-55 218.4 168 57.1
FAN08G0076 Fragaria x ananassa HOM05D001775 ORTHO05D006205 4.2e-55 218.4 168 57.1
FvH4_5g25920 Fragaria vesca HOM05D001775 ORTHO05D006205 7.2e-55 217.6 168 56.5
FAN13G2435 Fragaria x ananassa HOM05D001775 ORTHO05D006205 7.2e-55 217.6 168 56.5
Oeu016871.1 Olea europaea HOM05D001775 ORTHO05D006205 9.4e-55 217.2 170 59.4
Hund05085 Selenicereus undatus HOM05D001775 ORTHO05D006205 1.2e-54 216.9 168 57.7
Cc10_g00340 Coffea canephora HOM05D001775 ORTHO05D006205 1.6e-54 216.5 168 56.5
ClCG08G009240 Citrullus lanatus HOM05D001775 ORTHO05D006205 2.7e-54 215.7 168 54.8
TPR.G38180 Trifolium pratense HOM05D001775 ORTHO05D006205 2.7e-54 215.7 179 55.9
Haze_22846 Corylus avellana HOM05D001775 ORTHO05D006205 4.6e-54 214.9 172 58.1
arahy.Tifrunner.gnm1.ann1.62LGBX Arachis hypogaea HOM05D001775 ORTHO05D006205 6.1e-54 214.5 168 56.0
Cpa.g.sc26.151 Carica papaya HOM05D001775 ORTHO05D006205 6.1e-54 214.5 170 58.2
Potri.005G255100 Populus trichocarpa HOM05D001775 ORTHO05D006205 1.4e-53 213.4 168 55.4
PSO675G2258 Papaver somniferum HOM05D001775 ORTHO05D006205 3.0e-53 212.2 168 54.8
arahy.Tifrunner.gnm1.ann1.NA36AX Arachis hypogaea HOM05D001775 ORTHO05D006205 5.1e-53 211.5 168 55.4
RcHm_v2.0_Chr7g0216421 Rosa chinensis HOM05D001775 ORTHO05D006205 6.7e-53 211.1 168 56.0
CAN.G1330.2 Capsicum annuum HOM05D001775 ORTHO05D006205 8.8e-53 210.7 168 57.1
PSO541G5829 Papaver somniferum HOM05D001775 ORTHO05D006205 1.1e-52 210.3 168 53.6
TWI12G0153 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 1.1e-52 210.3 168 53.6
Ca_15392_v3 Cicer arietinum L. HOM05D001775 ORTHO05D006205 1.5e-52 209.9 168 55.4
Lalb_Chr11g0061401 Lupinus albus HOM05D001775 ORTHO05D006205 2.0e-52 209.5 168 57.1
Peaxi162Scf00680g00415 Petunia axillaris HOM05D001775 ORTHO05D006205 3.3e-52 208.8 168 56.5
Hund01795 Selenicereus undatus HOM05D001775 ORTHO05D006205 4.3e-52 208.4 168 54.2
Thecc.08G064000 Theobroma cacao HOM05D001775 ORTHO05D006205 4.3e-52 208.4 168 57.1
AUR62024107 Chenopodium quinoa HOM05D001775 ORTHO05D006205 5.7e-52 208.0 170 57.1
Phvul.009G007300 Phaseolus vulgaris HOM05D001775 ORTHO05D006205 9.7e-52 207.2 168 55.4
AUR62035157 Chenopodium quinoa HOM05D001775 ORTHO05D006205 1.3e-51 206.8 170 56.5
Thhalv10019232m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 1.7e-51 206.5 168 54.8
C06p50600 Brassica napus HOM05D001775 ORTHO05D006205 6.3e-51 204.5 168 53.6
Sp5g31560 Schrenkiella parvula HOM05D001775 ORTHO05D006205 8.2e-51 204.1 168 53.6
TAR628G0191 Trochodendron aralioides HOM05D001775 ORTHO05D006205 1.1e-50 203.8 168 56.0
BcaC08g47254 Brassica carinata HOM05D001775 ORTHO05D006205 2.4e-50 202.6 168 53.0
A07p42030 Brassica napus HOM05D001775 ORTHO05D006205 2.4e-50 202.6 168 53.0
BolC6t40085H Brassica oleracea HOM05D001775 ORTHO05D006205 2.4e-50 202.6 168 53.0
BraA07t31733Z Brassica rapa HOM05D001775 ORTHO05D006205 2.4e-50 202.6 168 53.0
CARHR021240 Cardamine hirsuta HOM05D001775 ORTHO05D006205 2.4e-50 202.6 168 54.2
EL10Ac1g01895 Beta vulgaris HOM05D001775 ORTHO05D006205 3.1e-50 202.2 170 55.9
MBI08_g29079_MAGBIO Magnolia biondii HOM05D001775 ORTHO05D006205 4.1e-50 201.8 170 56.5
Nitab4.5_0001756g0150 Nicotiana tabacum HOM05D001775 ORTHO05D006205 1.2e-49 200.3 169 55.6
Nitab4.5_0029491g0010 Nicotiana tabacum HOM05D001775 ORTHO05D006205 1.2e-49 200.3 169 55.6
Sabra05G0197600 Salix brachista HOM05D001775 ORTHO05D006205 1.2e-49 200.3 168 54.8
BcaB07g32074 Brassica carinata HOM05D001775 ORTHO05D006205 1.5e-49 199.9 168 52.4
CARHR069960 Cardamine hirsuta HOM05D001775 ORTHO05D006205 1.5e-49 199.9 168 53.6
Thhalv10008937m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 1.5e-49 199.9 168 54.2
Glyma.06G015300 Glycine max HOM05D001775 ORTHO05D006205 1.5e-49 199.9 168 53.0
AL2G36510 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 2.0e-49 199.5 168 51.8
BcaC08g47138 Brassica carinata HOM05D001775 ORTHO05D006205 2.0e-49 199.5 168 51.8
CsaV3_6G031380 Cucumis sativus L. HOM05D001775 ORTHO05D006205 2.6e-49 199.1 168 50.6
AT1G76405 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 4.5e-49 198.4 168 51.2
Carub.0001s2027 Capsella rubella HOM05D001775 ORTHO05D006205 4.5e-49 198.4 168 53.6
Carub.0002s2331 Capsella rubella HOM05D001775 ORTHO05D006205 7.7e-49 197.6 168 51.2
HanXRQChr05g0144711 Helianthus annuus HOM05D001775 ORTHO05D006205 1.0e-48 197.2 196 47.4
HanXRQChr15g0492581 Helianthus annuus HOM05D001775 ORTHO05D006205 1.3e-48 196.8 189 47.6
AT1G20816 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 1.7e-48 196.4 168 51.8
Gorai.009G186200 Gossypium raimondii HOM05D001775 ORTHO05D006205 2.9e-48 195.7 168 53.6
Gohir.A05G177800 Gossypium hirsutum HOM05D001775 ORTHO05D006205 3.8e-48 195.3 168 53.0
THA.LOC104813743 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 3.8e-48 195.3 168 50.6
vmacro21778 Vaccinium macrocarpon HOM05D001775 ORTHO05D006205 3.8e-48 195.3 205 46.8
C05p19360 Brassica napus HOM05D001775 ORTHO05D009111 5.0e-48 194.9 168 51.8
BolC5t30639H Brassica oleracea HOM05D001775 ORTHO05D006205 5.0e-48 194.9 168 51.8
A06p16800 Brassica napus HOM05D001775 ORTHO05D009111 6.5e-48 194.5 168 51.2
BcaC05g25983 Brassica carinata HOM05D001775 ORTHO05D006205 8.5e-48 194.1 168 51.2
BraA06t24788Z Brassica rapa HOM05D001775 ORTHO05D006205 1.1e-47 193.7 168 51.2
ECA232G0408 Erigeron canadensis HOM05D000593 ORTHO05D006205 1.1e-47 193.7 155 53.5
Gohir.D05G181200 Gossypium hirsutum HOM05D001775 ORTHO05D006205 1.1e-47 193.7 168 53.0
Sp1g18510 Schrenkiella parvula HOM05D001775 ORTHO05D006205 1.1e-47 193.7 168 51.8
AL1G33820 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 1.9e-47 193.0 168 51.2
Aa31LG4G6480 Aethionema arabicum HOM05D001775 ORTHO05D006205 2.5e-47 192.6 173 53.2
A07p28510 Brassica napus HOM05D001775 ORTHO05D006205 2.5e-47 192.6 169 52.1
PGR083G1854 Punica granatum HOM05D001775 ORTHO05D006205 2.5e-47 192.6 184 52.2
BcaC08g45531 Brassica carinata HOM05D001775 ORTHO05D006205 5.5e-47 191.4 168 51.2
C06p32060 Brassica napus HOM05D001775 ORTHO05D006205 5.5e-47 191.4 168 51.2
BolC6t38332H Brassica oleracea HOM05D001775 ORTHO05D006205 7.2e-47 191.0 168 51.2
BraA07t30489Z Brassica rapa HOM05D001775 ORTHO05D006205 9.4e-47 190.7 169 51.5
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 1.6e-46 189.9 152 58.6
Solyc04g082680.3 Solanum lycopersicum HOM05D001775 ORTHO05D006205 1.6e-46 189.9 168 52.4
Sopen04g036310 Solanum pennellii HOM05D001775 ORTHO05D006205 2.1e-46 189.5 168 52.4
HanXRQChr14g0427901 Helianthus annuus HOM05D001775 ORTHO05D006205 3.6e-46 188.7 188 46.3
PGSC0003DMG400009918 Solanum tuberosum HOM05D001775 ORTHO05D006205 3.6e-46 188.7 168 51.8
BcaB02g07061 Brassica carinata HOM05D001775 ORTHO05D006205 1.0e-45 187.2 169 51.5
Lsat_1_v5_gn_2_1320 Lactuca sativa HOM05D001775 ORTHO05D006205 3.0e-45 185.7 165 50.3
Rhsim06G0004200 Rhododendron simsii HOM05D001775 ORTHO05D006205 3.9e-45 185.3 237 39.7
MELO3C026523.2 Cucumis melo HOM05D001775 ORTHO05D006205 5.1e-45 184.9 193 44.6
Lsat_1_v5_gn_9_41801 Lactuca sativa HOM05D001775 ORTHO05D006205 6.7e-45 184.5 182 46.2
THA.LOC104811999 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 6.7e-45 184.5 168 48.8
Medtr3g115990 Medicago truncatula HOM05D001775 ORTHO05D006205 8.8e-45 184.1 205 44.9
Ah.00g001090 Amaranthus hybridus HOM05D001775 ORTHO05D006205 5.7e-44 181.4 172 51.7
HPP92_015233 Vanilla planifolia HOM05D001775 ORTHO05D006205 7.4e-44 181.0 168 47.0
ECA238G0508 Erigeron canadensis HOM05D001775 ORTHO05D006205 1.3e-43 180.3 190 45.8
ATR0807G198 Amborella trichopoda HOM05D001775 ORTHO05D006205 4.8e-43 178.3 169 48.5
Atru.chr13.81 Acer truncatum HOM05D001775 ORTHO05D006205 1.1e-42 177.2 141 57.4
Manes.05G125900 Manihot esculenta HOM05D001775 ORTHO05D006205 2.2e-40 169.5 136 55.1
TWI56G1014 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 5.0e-40 168.3 201 40.3
FAN18G0260 Fragaria x ananassa HOM05D001775 ORTHO05D006205 1.4e-37 160.2 125 53.6
Dinv31976 Davidia involucrata HOM05D001775 ORTHO05D000295 1.1e-34 150.6 170 47.6
Os02g0832200 Oryza sativa ssp. japonica HOM05D001775 ORTHO05D006205 1.4e-34 150.2 186 43.0
COL.COLO4_36626 Corchorus olitorius HOM05D001775 ORTHO05D006205 1.8e-34 149.8 140 50.0
Lj4A6T36 Lonicera japonica HOM05D001775 ORTHO05D006205 5.3e-34 148.3 111 59.5
Psat5g008840 Pisum sativum HOM05D001775 ORTHO05D006205 1.2e-33 147.1 151 45.7
Duzib116G0384 Durio zibethinus HOM05D001775 ORTHO05D006205 3.5e-33 145.6 168 43.5
Mapoly0001s0026 Marchantia polymorpha HOM05D001775 ORTHO05D006205 3.5e-33 145.6 169 42.6
CANSAT25G3735 Cannabis sativa HOM05D001775 ORTHO05D006205 5.9e-33 144.8 103 60.2
Pp3c16_8850 Physcomitrium patens HOM05D001775 ORTHO05D006205 7.7e-33 144.4 169 41.4
Zm00001eb259570 Zea mays HOM05D001775 ORTHO05D006205 1.1e-31 140.6 174 42.5
CDE05G0488 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 1.9e-31 139.8 145 44.8
Nn5g31022 Nelumbo nucifera HOM05D001775 ORTHO05D006205 8.3e-27 124.4 168 39.9
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 8.3e-27 124.4 125 46.4
MCO07G511 Micromonas commoda HOM05D001775 ORTHO05D006205 7.0e-26 121.3 171 37.4
arahy.Tifrunner.gnm1.ann1.5GY58N Arachis hypogaea HOM05D001775 ORTHO05D006205 2.7e-25 119.4 97 55.7
CDE05G0091 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 3.5e-25 119.0 173 37.6
PRCOL_00001546 Prasinoderma coloniale HOM05D001775 ORTHO05D006205 4.5e-25 118.6 169 34.9
Duzib041G0706 Durio zibethinus HOM05D001775 ORTHO05D006205 1.0e-24 117.5 168 36.3
CBR_g44541 Chara braunii HOM05D001775 ORTHO05D006205 1.1e-23 114.0 169 36.1
arahy.Tifrunner.gnm1.ann1.3KDH9X Arachis hypogaea HOM05D001775 ORTHO05D006205 4.2e-23 112.1 101 49.5
SMO117G0070 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 2.3e-21 106.3 141 41.1
HPP92_015234 Vanilla planifolia HOM05D001775 ORTHO05D006205 5.2e-21 105.1 109 42.2
AagrBONN_evm.TU.Sc2ySwM_344.4857 Anthoceros agrestis HOM05D001775 ORTHO05D006205 2.0e-20 103.2 147 35.4
VMungo1309G1483 Vigna mungo HOM05D001775 ORTHO05D006205 7.5e-20 101.3 162 38.3
SMO114G0103 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 1.3e-19 100.5 113 46.0
arahy.Tifrunner.gnm1.ann1.S8I99S Arachis hypogaea HOM05D001775 ORTHO05D006205 1.7e-16 90.1 86 53.5
Pp3c5_19490 Physcomitrium patens HOM05D001775 ORTHO05D006205 1.7e-16 90.1 92 44.6
AagrBONN_evm.TU.Sc2ySwM_362.1823 Anthoceros agrestis HOM05D001775 ORTHO05D006205 5.0e-16 88.6 171 31.0
arahy.Tifrunner.gnm1.ann1.FUJ1Q4 Arachis hypogaea HOM05D001795 ORTHO05D006205 2.3e-13 79.7 70 47.1
Nitab4.5_0005347g0040 Nicotiana tabacum HOM05D001775 ORTHO05D006205 3.4e-12 75.9 61 50.8


User provided reference genes

Program Settings