Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.C00367 Erythranthe guttata HOM05D007018 ORTHO05D008887 3.4e-101 371.7 190 100.0
MSTRG.993 Avicennia marina HOM05D007018 ORTHO05D008887 3.6e-79 298.5 186 80.6
SGA_v2.0_scaffold366G50030 Striga asiatica HOM05D007018 ORTHO05D008887 4.0e-78 295.0 186 78.5
Dinv31968 Davidia involucrata HOM05D007018 ORTHO05D008887 1.4e-70 270.0 189 72.0
CAN.G311.135 Capsicum annuum HOM05D007018 ORTHO05D008887 2.0e-69 266.2 182 73.1
Nn5g31007 Nelumbo nucifera HOM05D007018 ORTHO05D008887 9.9e-69 263.8 187 70.1
GSVIVG01013398001 Vitis vinifera HOM05D007018 ORTHO05D008887 2.2e-68 262.7 191 70.7
PGSC0003DMG400009913 Solanum tuberosum HOM05D007018 ORTHO05D008887 3.7e-68 261.9 186 73.7
QL02p015150 Quercus lobata HOM05D007018 ORTHO05D008887 6.4e-68 261.2 182 68.7
Solyc04g082590.3 Solanum lycopersicum HOM05D007018 ORTHO05D008887 8.4e-68 260.8 176 74.4
unitig_749.g13890 Utricularia gibba HOM05D007018 ORTHO05D008887 1.1e-67 260.4 189 70.4
Sc26g0004680 Simmondsia chinensis HOM05D007018 ORTHO05D008887 4.1e-67 258.5 187 70.6
Hma1.2p1_0699F.1_g205550 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 9.2e-67 257.3 186 66.1
Lj4A809G49 Lonicera japonica HOM05D007018 ORTHO05D008887 9.2e-67 257.3 175 73.1
Sopen04g036220 Solanum pennellii HOM05D007018 ORTHO05D008887 1.2e-66 256.9 176 75.0
Potri.005G253600 Populus trichocarpa HOM05D007018 ORTHO05D008887 1.6e-66 256.5 178 68.0
Sed0005335 Sechium edule HOM05D007018 ORTHO05D008887 1.6e-66 256.5 177 71.2
Actinidia17062 Actinidia chinensis HOM05D007018 ORTHO05D008887 3.5e-66 255.4 168 74.4
CiPaw.08G075600 Carya illinoinensis HOM05D007018 ORTHO05D008887 4.6e-66 255.0 186 68.3
Cc04_g01910 Coffea canephora HOM05D007018 ORTHO05D008887 4.6e-66 255.0 178 70.8
DCAR_022937 Daucus carota HOM05D007018 ORTHO05D008887 6.0e-66 254.6 178 70.8
Peaxi162Scf00680g00121 Petunia axillaris HOM05D007018 ORTHO05D008887 6.0e-66 254.6 192 68.8
Haze_22833 Corylus avellana HOM05D007018 ORTHO05D008887 1.0e-65 253.8 186 69.9
Sabra05G0196700 Salix brachista HOM05D007018 ORTHO05D008887 1.3e-65 253.4 186 66.1
Sabra02G0005900 Salix brachista HOM05D007018 ORTHO05D008887 1.7e-65 253.1 186 65.1
CSS0014140 Camellia sinensis var. sinensis HOM05D007018 ORTHO05D008887 2.3e-65 252.7 186 70.4
FAN04G0342 Fragaria x ananassa HOM05D007018 ORTHO05D008887 2.3e-65 252.7 177 68.9
RcHm_v2.0_Chr7g0215941 Rosa chinensis HOM05D007018 ORTHO05D008887 3.0e-65 252.3 186 67.7
FAN08G2873 Fragaria x ananassa HOM05D007018 ORTHO05D008887 3.9e-65 251.9 177 67.2
Lsat_1_v5_gn_8_27360 Lactuca sativa HOM05D007018 ORTHO05D008887 3.9e-65 251.9 190 63.2
Aqoxy6G01596 Aquilegia oxysepala HOM05D007018 ORTHO05D008887 5.1e-65 251.5 186 65.6
Ciclev10002616m.g Citrus clementina HOM05D007018 ORTHO05D008887 5.1e-65 251.5 186 65.6
TPR.G38107 Trifolium pratense HOM05D007018 ORTHO05D008887 1.1e-64 250.4 179 69.8
TWI36G0062 Tripterygium wilfordii HOM05D007018 ORTHO05D008887 1.1e-64 250.4 190 67.9
TAR625G1418 Trochodendron aralioides HOM05D007018 ORTHO05D008887 1.9e-64 249.6 189 66.1
FAN13G0505 Fragaria x ananassa HOM05D007018 ORTHO05D008887 2.5e-64 249.2 177 67.8
Lj1g0008636 Lotus japonicus HOM05D007018 ORTHO05D008887 3.3e-64 248.8 187 70.6
CANSAT25G2394 Cannabis sativa HOM05D007018 ORTHO05D008887 4.3e-64 248.4 180 70.0
CsaV3_4G037440 Cucumis sativus L. HOM05D007018 ORTHO05D008887 7.3e-64 247.7 180 69.4
TAR633G0270 Trochodendron aralioides HOM05D007018 ORTHO05D008887 7.3e-64 247.7 189 65.6
MELO3C017041.2 Cucumis melo HOM05D007018 ORTHO05D008887 9.6e-64 247.3 180 68.3
Prupe.5G008700 Prunus persica HOM05D007018 ORTHO05D008887 1.2e-63 246.9 182 67.6
Duzib093G1136 Durio zibethinus HOM05D007018 ORTHO05D008887 1.6e-63 246.5 184 67.9
Glyma.06G016200 Glycine max HOM05D007018 ORTHO05D008887 1.6e-63 246.5 177 70.1
VMungo1309G2102 Vigna mungo HOM05D007018 ORTHO05D008887 2.1e-63 246.1 186 67.7
Lalb_Chr11g0061471 Lupinus albus HOM05D007018 ORTHO05D008887 2.8e-63 245.7 177 69.5
CDE05G1284 Ceratophyllum demersum HOM05D007018 ORTHO05D008887 3.6e-63 245.4 167 70.1
FAN18G2290 Fragaria x ananassa HOM05D007018 ORTHO05D008887 3.6e-63 245.4 192 66.7
FvH4_5g25650 Fragaria vesca HOM05D007018 ORTHO05D008887 8.1e-63 244.2 192 66.1
HanXRQChr08g0216381 Helianthus annuus HOM05D007018 ORTHO05D008887 1.1e-62 243.8 190 61.6
Gohir.D01G088700 Gossypium hirsutum HOM05D007018 ORTHO05D008887 4.0e-62 241.9 179 70.4
Atru.chr13.101 Acer truncatum HOM05D007018 ORTHO05D008887 5.2e-62 241.5 179 66.5
Rhsim06G0005000 Rhododendron simsii HOM05D007018 ORTHO05D008887 5.2e-62 241.5 172 70.3
ECA233G6114 Erigeron canadensis HOM05D000716 ORTHO05D002658 6.8e-62 241.1 180 65.0
Gorai.002G114400 Gossypium raimondii HOM05D007018 ORTHO05D008887 2.6e-61 239.2 175 69.1
Psat5g009640 Pisum sativum HOM05D007018 ORTHO05D008887 4.4e-61 238.4 168 71.4
Phvul.009G006300 Phaseolus vulgaris HOM05D007018 ORTHO05D008887 5.8e-61 238.0 183 67.8
Medtr3g115880 Medicago truncatula HOM05D007018 ORTHO05D008887 7.6e-61 237.7 163 71.8
SalBow7G2934 Salvia bowleyana HOM05D007018 ORTHO05D008887 7.6e-61 237.7 142 82.4
Gohir.A01G103400 Gossypium hirsutum HOM05D007018 ORTHO05D008887 1.3e-60 236.9 175 68.6
ClCG11G018850 Citrullus lanatus HOM05D007018 ORTHO05D008887 2.2e-60 236.1 180 66.7
Eucgr.F01791 Eucalyptus grandis HOM05D007018 ORTHO05D008887 1.4e-59 233.4 179 67.0
PGR083G2064 Punica granatum HOM05D007018 ORTHO05D008887 5.4e-59 231.5 182 63.7
CARHR292440 Cardamine hirsuta HOM05D007018 ORTHO05D008887 9.3e-59 230.7 185 64.9
PSO541G4149 Papaver somniferum HOM05D007018 ORTHO05D008887 2.1e-58 229.6 186 61.8
AT1G42480 Arabidopsis thaliana HOM05D007018 ORTHO05D008887 6.0e-58 228.0 179 63.7
MD06G1006600 Malus domestica HOM05D007018 ORTHO05D008887 1.0e-57 227.3 167 67.7
HPP92_012484 Vanilla planifolia HOM05D007018 ORTHO05D008887 1.0e-57 227.3 161 69.6
AL1G51350 Arabidopsis lyrata HOM05D007018 ORTHO05D008887 1.3e-57 226.9 166 68.1
Sp1g32030 Schrenkiella parvula HOM05D007018 ORTHO05D008887 1.7e-57 226.5 171 64.9
Aa31sc108G20 Aethionema arabicum HOM05D007018 ORTHO05D008887 8.7e-57 224.2 166 66.9
arahy.Tifrunner.gnm1.ann1.UKS4G3 Arachis hypogaea HOM05D007018 ORTHO05D008887 1.5e-56 223.4 186 66.7
Thhalv10004993m.g Eutrema salsugineum HOM05D007018 ORTHO05D008887 1.5e-56 223.4 185 62.7
arahy.Tifrunner.gnm1.ann1.R1PR4F Arachis hypogaea HOM05D007018 ORTHO05D008887 3.3e-56 222.2 186 66.1
A08p07720 Brassica napus HOM05D007018 ORTHO05D008887 4.3e-56 221.9 171 63.2
BraA08t32785Z Brassica rapa HOM05D007018 ORTHO05D008887 4.3e-56 221.9 171 63.2
Carub.0001s3428 Capsella rubella HOM05D007018 ORTHO05D008887 4.3e-56 221.9 166 66.9
BcaC07g37460 Brassica carinata HOM05D007018 ORTHO05D008887 9.6e-56 220.7 171 62.6
C08p09340 Brassica napus HOM05D007018 ORTHO05D008887 9.6e-56 220.7 171 62.6
BcaB04g17781 Brassica carinata HOM05D007018 ORTHO05D008887 1.3e-55 220.3 171 62.6
BolC8t47779H Brassica oleracea HOM05D007018 ORTHO05D008887 1.3e-55 220.3 171 62.6
THA.LOC104806916 Tarenaya hassleriana HOM05D007018 ORTHO05D008887 2.1e-55 219.5 167 64.7
Hma1.2p1_0699F.1_g205540 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 1.4e-54 216.9 145 69.7
vmacro21785 Vaccinium macrocarpon HOM05D007018 ORTHO05D008887 4.0e-54 215.3 245 49.0
ATR0807G118 Amborella trichopoda HOM05D007018 ORTHO05D008887 6.9e-54 214.5 152 70.4
Manes.18G003600 Manihot esculenta HOM05D007018 ORTHO05D008887 1.2e-53 213.8 182 60.4
Actinidia15510 Actinidia chinensis HOM05D007018 ORTHO05D008887 4.9e-52 208.4 134 74.6
Thecc.08G062700 Theobroma cacao HOM05D007018 ORTHO05D008887 6.4e-52 208.0 138 74.6
Os02g0117200 Oryza sativa ssp. japonica HOM05D007018 ORTHO05D008887 3.2e-51 205.7 173 57.2
Zm00001eb209390 Zea mays HOM05D007018 ORTHO05D008887 2.3e-49 199.5 173 57.8
COL.COLO4_37754 Corchorus olitorius HOM05D007018 ORTHO05D008887 1.1e-48 197.2 142 71.1
Manes.13G069000 Manihot esculenta HOM05D007018 ORTHO05D008887 3.3e-48 195.7 134 70.9
Pp3c3_21490 Physcomitrium patens HOM05D007018 ORTHO05D008887 6.0e-42 174.9 186 48.4
AUR62035144 Chenopodium quinoa HOM05D007018 ORTHO05D008887 1.8e-41 173.3 201 50.7
Ca_15400_v3 Cicer arietinum L. HOM05D007018 ORTHO05D008887 1.1e-40 170.6 131 67.2
Nitab4.5_0009646g0030 Nicotiana tabacum HOM05D007018 ORTHO05D008887 8.1e-39 164.5 198 49.0
HPP92_001689 Vanilla planifolia HOM05D007018 ORTHO05D008887 2.9e-36 156.0 163 50.9
AUR62042577 Chenopodium quinoa HOM05D007018 ORTHO05D008887 3.5e-34 149.1 181 50.3
EL10Ac1g01910 Beta vulgaris HOM05D007018 ORTHO05D008887 7.9e-34 147.9 171 51.5
Glyma.04G016200 Glycine max HOM05D007018 ORTHO05D008887 1.8e-30 136.7 99 69.7
Prupe.5G008600 Prunus persica HOM05D007018 ORTHO05D008887 1.0e-28 131.0 83 69.9
Cre16.g661700 Chlamydomonas reinhardtii HOM05D007018 ORTHO05D008887 3.0e-25 119.4 170 40.6
Hund05090 Selenicereus undatus HOM05D007018 ORTHO05D008887 8.7e-25 117.9 131 52.7
Hma1.2p1_0699F.1_g205580 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 2.4e-22 109.8 85 61.2
MCO14G410 Micromonas commoda HOM05D007018 ORTHO05D008887 2.6e-21 106.3 166 36.7
Potri.002G007601 Populus trichocarpa HOM05D007018 ORTHO05D008887 1.3e-20 104.0 72 66.7
AagrBONN_evm.TU.Sc2ySwM_228.4250 Anthoceros agrestis HOM05D007018 ORTHO05D008887 1.7e-20 103.6 82 58.5
AUR62042580 Chenopodium quinoa HOM05D007018 ORTHO05D008887 1.9e-19 100.1 183 40.4
PRCOL_00006317 Prasinoderma coloniale HOM05D007018 ORTHO05D008887 3.0e-17 92.8 139 39.6
SEGI_04341 Sequoiadendron giganteum HOM05D007018 ORTHO05D008887 4.1e-14 82.4 71 57.7
SHI07963 Sapria himalayana HOM05D007018 ORTHO05D008887 2.6e-08 63.2 40 75.0
HPP92_012557 Vanilla planifolia HOM05D007018 ORTHO05D008887 6.3e-07 58.5 79 41.8


User provided reference genes

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