Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B01922 Erythranthe guttata HOM05D002391 ORTHO05D004870 0.0e+00 1414.4 741 100.0
MSTRG.17383 Avicennia marina HOM05D002391 ORTHO05D004870 0.0e+00 1305.0 741 90.6
SGA_v2.0_scaffold12G06269 Striga asiatica HOM05D002391 ORTHO05D004870 0.0e+00 1294.3 743 90.0
SalBow3G2598 Salvia bowleyana HOM05D002391 ORTHO05D004870 0.0e+00 1285.8 768 88.4
SalBow3G4592 Salvia bowleyana HOM05D002391 ORTHO05D004870 0.0e+00 1285.8 768 88.4
Actinidia08007 Actinidia chinensis HOM05D002391 ORTHO05D004870 0.0e+00 1216.8 745 84.7
Hma1.2p1_0074F.1_g038740 Hydrangea macrophylla HOM05D002391 ORTHO05D004870 0.0e+00 1210.3 750 84.3
vmacro13188 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 0.0e+00 1202.2 743 84.9
Sopen07g029360 Solanum pennellii HOM05D002391 ORTHO05D004870 0.0e+00 1197.2 735 83.4
Solyc07g056010.3 Solanum lycopersicum HOM05D002391 ORTHO05D004870 0.0e+00 1194.1 735 83.3
PGSC0003DMG401031089 Solanum tuberosum HOM05D002391 ORTHO05D004870 0.0e+00 1192.9 735 83.4
Peaxi162Scf00028g00124 Petunia axillaris HOM05D002391 ORTHO05D004870 0.0e+00 1192.2 733 83.8
CAN.G1209.27 Capsicum annuum HOM05D002391 ORTHO05D004870 0.0e+00 1191.0 738 82.8
Dinv31611 Davidia involucrata HOM05D002391 ORTHO05D004870 0.0e+00 1191.0 747 83.3
CAN.G585.49 Capsicum annuum HOM05D002391 ORTHO05D004870 0.0e+00 1183.7 738 82.2
Lsat_1_v5_gn_4_41841 Lactuca sativa HOM05D002391 ORTHO05D004870 0.0e+00 1174.8 741 81.9
Nitab4.5_0003682g0020 Nicotiana tabacum HOM05D002391 ORTHO05D004870 0.0e+00 1171.0 721 83.5
Dinv32645 Davidia involucrata HOM05D002391 ORTHO05D004870 0.0e+00 1163.7 727 84.0
TAR629G2316 Trochodendron aralioides HOM05D002391 ORTHO05D004870 0.0e+00 1162.9 737 82.1
Lsat_1_v5_gn_3_17681 Lactuca sativa HOM05D002391 ORTHO05D004870 0.0e+00 1161.7 741 81.0
Nn2g14439 Nelumbo nucifera HOM05D002391 ORTHO05D004870 0.0e+00 1159.4 737 81.4
TWI59G0940 Tripterygium wilfordii HOM05D002391 ORTHO05D004870 0.0e+00 1157.5 739 81.3
DCAR_032252 Daucus carota HOM05D002391 ORTHO05D004870 0.0e+00 1155.6 738 81.3
arahy.Tifrunner.gnm1.ann1.SI3K9E Arachis hypogaea HOM05D002391 ORTHO05D004870 0.0e+00 1155.2 745 80.9
arahy.Tifrunner.gnm1.ann1.E8X9SV Arachis hypogaea HOM05D002391 ORTHO05D004870 0.0e+00 1153.7 745 80.9
CANSAT56G4423 Cannabis sativa HOM05D002391 ORTHO05D004870 0.0e+00 1153.3 730 82.3
Manes.01G239800 Manihot esculenta HOM05D002391 ORTHO05D004870 0.0e+00 1152.9 738 81.4
Aqoxy5G01515 Aquilegia oxysepala HOM05D002391 ORTHO05D004870 0.0e+00 1151.7 724 82.6
QL08p047248 Quercus lobata HOM05D002391 ORTHO05D004870 0.0e+00 1150.6 744 80.4
COL.COLO4_31148 Corchorus olitorius HOM05D002391 ORTHO05D004870 0.0e+00 1150.2 729 81.6
Cfa003734 Carpinus fangiana HOM05D002391 ORTHO05D004870 0.0e+00 1149.0 742 80.6
Haze_15735 Corylus avellana HOM05D002391 ORTHO05D004870 0.0e+00 1146.3 742 80.3
TWI14G1409 Tripterygium wilfordii HOM05D002391 ORTHO05D004870 0.0e+00 1145.6 726 82.1
ClCG06G002280 Citrullus lanatus HOM05D002391 ORTHO05D004870 0.0e+00 1144.4 753 79.8
Atru.chr5.768 Acer truncatum HOM05D002391 ORTHO05D004870 0.0e+00 1142.5 735 80.8
HanXRQChr16g0520851 Helianthus annuus HOM05D002391 ORTHO05D004870 0.0e+00 1142.5 733 81.0
Ciclev10018998m.g Citrus clementina HOM05D002391 ORTHO05D004870 0.0e+00 1141.3 741 80.4
CANSAT56G4076 Cannabis sativa HOM05D002391 ORTHO05D004870 0.0e+00 1140.6 727 81.4
CsaV3_6G008330 Cucumis sativus L. HOM05D002391 ORTHO05D004870 0.0e+00 1140.6 753 79.5
CiPaw.01G082500 Carya illinoinensis HOM05D002391 ORTHO05D004870 0.0e+00 1140.2 735 80.3
MELO3C022305.2 Cucumis melo HOM05D002391 ORTHO05D004870 0.0e+00 1139.8 753 79.4
Phvul.009G254600 Phaseolus vulgaris HOM05D002391 ORTHO05D004870 0.0e+00 1139.4 742 80.1
Potri.002G179600 Populus trichocarpa HOM05D002391 ORTHO05D004870 0.0e+00 1138.3 739 81.1
Glyma.03G261100 Glycine max HOM05D002391 ORTHO05D004870 0.0e+00 1135.9 748 79.1
Lalb_Chr18g0044711 Lupinus albus HOM05D002391 ORTHO05D004870 0.0e+00 1133.6 733 80.8
Hund24710 Selenicereus undatus HOM05D002391 ORTHO05D004870 0.0e+00 1133.2 732 79.9
VMungo1309G0406 Vigna mungo HOM05D002391 ORTHO05D004870 0.0e+00 1132.9 746 79.0
Phvul.009G257900 Phaseolus vulgaris HOM05D002391 ORTHO05D004870 0.0e+00 1132.5 746 79.1
Glyma.19G260100 Glycine max HOM05D002391 ORTHO05D004870 0.0e+00 1132.1 748 78.9
TPR.G4730 Trifolium pratense HOM05D002391 ORTHO05D004870 0.0e+00 1132.1 738 79.4
Prupe.2G092100 Prunus persica HOM05D002391 ORTHO05D004870 0.0e+00 1131.7 730 78.8
Ca_09546_v3 Cicer arietinum L. HOM05D002391 ORTHO05D004870 0.0e+00 1130.9 746 79.0
FAN03G0415 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1130.2 729 80.1
Sed0000252 Sechium edule HOM05D002391 ORTHO05D004870 0.0e+00 1130.2 755 78.5
Psat0s3525g0040 Pisum sativum HOM05D002391 ORTHO05D004870 0.0e+00 1128.2 745 79.2
Duzib235G0384 Durio zibethinus HOM05D002391 ORTHO05D004870 0.0e+00 1127.5 736 79.3
Medtr7g118220 Medicago truncatula HOM05D002391 ORTHO05D004870 0.0e+00 1127.5 744 78.6
FAN10G4291 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1127.1 729 80.0
VMungo1309G1994 Vigna mungo HOM05D002391 ORTHO05D004870 0.0e+00 1125.5 746 78.3
FAN06G0341 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1124.8 729 79.7
Lj5g0026855 Lotus japonicus HOM05D002391 ORTHO05D004870 0.0e+00 1124.4 749 79.0
FvH4_7g17670 Fragaria vesca HOM05D002391 ORTHO05D004870 0.0e+00 1124.0 740 78.6
FAN01G3049 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1123.6 729 79.4
Sabra02G0134300 Salix brachista HOM05D002391 ORTHO05D004870 0.0e+00 1123.6 739 80.0
FAN10G1672 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1122.5 729 79.6
FAN06G0379 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1122.1 729 79.6
Gorai.005G122300 Gossypium raimondii HOM05D002391 ORTHO05D004870 0.0e+00 1120.1 749 78.5
PGR031G3302 Punica granatum HOM05D002391 ORTHO05D004870 0.0e+00 1116.7 744 78.2
Eucgr.B02196 Eucalyptus grandis HOM05D002391 ORTHO05D004870 0.0e+00 1114.0 727 79.5
A03p31630 Brassica napus HOM05D002391 ORTHO05D004870 0.0e+00 1113.2 747 78.0
BraA03t12339Z Brassica rapa HOM05D002391 ORTHO05D004870 0.0e+00 1113.2 747 78.0
Gohir.A02G090600 Gossypium hirsutum HOM05D002391 ORTHO05D004870 0.0e+00 1113.2 749 78.1
Prupe.2G197800 Prunus persica HOM05D002391 ORTHO05D004870 0.0e+00 1111.7 728 77.9
Aa31LG5G1170 Aethionema arabicum HOM05D002391 ORTHO05D004870 0.0e+00 1110.9 740 77.8
Sp6g01350 Schrenkiella parvula HOM05D002391 ORTHO05D004870 0.0e+00 1110.9 747 77.6
Gorai.010G141700 Gossypium raimondii HOM05D002391 ORTHO05D004870 0.0e+00 1109.4 737 77.7
Thecc.06G056400 Theobroma cacao HOM05D002391 ORTHO05D004870 0.0e+00 1109.4 742 78.3
C03p38630 Brassica napus HOM05D002391 ORTHO05D004870 0.0e+00 1108.6 747 77.6
BolC3t16136H Brassica oleracea HOM05D002391 ORTHO05D004870 0.0e+00 1108.6 747 77.6
Thhalv10028369m.g Eutrema salsugineum HOM05D002391 ORTHO05D004870 0.0e+00 1108.2 747 77.1
Gohir.D06G121400 Gossypium hirsutum HOM05D002391 ORTHO05D004870 0.0e+00 1107.8 737 77.6
PSO017G7365 Papaver somniferum HOM05D002391 ORTHO05D004870 0.0e+00 1102.8 743 77.3
PSO170G3053 Papaver somniferum HOM05D002391 ORTHO05D004870 0.0e+00 1101.7 743 77.3
THA.LOC104815894 Tarenaya hassleriana HOM05D002391 ORTHO05D004870 0.0e+00 1101.3 747 76.6
Ah.08g211620 Amaranthus hybridus HOM05D002391 ORTHO05D004870 0.0e+00 1098.6 735 76.9
AL6G52005 Arabidopsis lyrata HOM05D002391 ORTHO05D004870 0.0e+00 1097.0 741 77.1
unitig_899.g15596 Utricularia gibba HOM05D002391 ORTHO05D004870 0.0e+00 1096.6 710 81.0
PSO339G3919 Papaver somniferum HOM05D002391 ORTHO05D004870 0.0e+00 1095.9 743 76.7
Carub.0006s3580 Capsella rubella HOM05D002391 ORTHO05D004870 0.0e+00 1093.6 741 76.8
CARHR250280 Cardamine hirsuta HOM05D002391 ORTHO05D004870 0.0e+00 1091.3 740 76.9
CDE11G0036 Ceratophyllum demersum HOM05D002391 ORTHO05D004870 0.0e+00 1090.1 733 75.3
AT4G01395 Arabidopsis thaliana HOM05D002391 ORTHO05D004870 0.0e+00 1089.3 743 76.9
Nitab4.5_0003729g0040 Nicotiana tabacum HOM05D002391 ORTHO05D004870 0.0e+00 1088.6 706 80.0
Lj9A607T84 Lonicera japonica HOM05D002391 ORTHO05D004870 0.0e+00 1087.8 692 81.6
BcaC01g06822 Brassica carinata HOM05D002391 ORTHO05D004870 5.1e-312 1073.5 722 77.6
MBI12_g09288_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 2.2e-310 1068.5 735 75.2
Sc20g0005510 Simmondsia chinensis HOM05D002391 ORTHO05D004870 1.6e-308 1062.4 742 73.2
ECA234G3070 Erigeron canadensis HOM05D002391 ORTHO05D004870 2.1e-308 1062.0 736 74.9
Gohir.D02G107800 Gossypium hirsutum HOM05D002391 ORTHO05D004870 2.7e-308 1061.6 748 75.3
ATR0697G195 Amborella trichopoda HOM05D002391 ORTHO05D004870 3.6e-308 1061.2 743 72.5
MD07G1159900 Malus domestica HOM05D002391 ORTHO05D004870 1.4e-307 1059.3 732 75.7
Cc06_g20470 Coffea canephora HOM05D002391 ORTHO05D004870 9.1e-304 1046.6 735 75.4
HPP92_001559 Vanilla planifolia HOM05D002391 ORTHO05D004870 1.2e-300 1036.2 731 72.0
SEGI_26155 Sequoiadendron giganteum HOM05D002391 ORTHO05D004870 1.4e-296 1022.7 737 70.4
Oeu007915.2 Olea europaea HOM05D002391 ORTHO05D004870 2.4e-296 1021.9 750 74.0
SEGI_23282 Sequoiadendron giganteum HOM05D002391 ORTHO05D004870 1.3e-294 1016.1 737 70.0
EL10Ac7g16621 Beta vulgaris HOM05D002391 ORTHO05D004870 1.7e-294 1015.8 773 69.6
Lalb_Chr15g0076531 Lupinus albus HOM05D002391 ORTHO05D004870 2.3e-294 1015.4 728 72.8
GSVIVG01027440001 Vitis vinifera HOM05D002391 ORTHO05D004870 1.1e-293 1013.1 726 72.9
ECA234G2472 Erigeron canadensis HOM05D002391 ORTHO05D004870 3.3e-293 1011.5 725 72.6
AUR62042494 Chenopodium quinoa HOM05D002391 ORTHO05D004870 2.8e-292 1008.4 663 77.5
AUR62040015 Chenopodium quinoa HOM05D002391 ORTHO05D004870 7.0e-288 993.8 661 76.6
unitig_21.g20038 Utricularia gibba HOM05D002391 ORTHO05D004870 4.7e-268 927.9 656 74.8
SMO364G0412 Selaginella moellendorffii HOM05D002391 ORTHO05D004870 2.3e-246 855.9 728 61.3
Mapoly0151s0016 Marchantia polymorpha HOM05D002391 ORTHO05D004870 2.5e-245 852.4 726 60.1
Pp3c17_20140 Physcomitrium patens HOM05D002391 ORTHO05D004870 1.2e-242 843.6 737 59.0
BcaB05g23972 Brassica carinata HOM05D002391 ORTHO05D004870 3.5e-239 832.0 745 62.3
Manes.05G016350 Manihot esculenta HOM05D002391 ORTHO05D004870 2.8e-228 795.8 727 63.7
Rhsim07G0007000 Rhododendron simsii HOM05D002391 ORTHO05D004870 1.4e-227 793.5 546 76.0
Gohir.A06G116700 Gossypium hirsutum HOM05D002391 ORTHO05D004870 8.5e-225 784.3 569 72.2
MD07G1159800 Malus domestica HOM05D002391 ORTHO05D004870 3.6e-215 752.3 519 76.1
CBR_g6290 Chara braunii HOM05D002391 ORTHO05D004870 5.5e-208 728.4 867 46.8
RcHm_v2.0_Chr1g0334511 Rosa chinensis HOM05D002391 ORTHO05D004870 9.1e-203 711.1 434 83.6
TAR636G0053 Trochodendron aralioides HOM05D002391 ORTHO05D004870 3.7e-188 662.5 385 87.8
PSO302G0149 Papaver somniferum HOM05D002391 ORTHO05D004870 5.9e-178 628.6 412 76.9
Os02g0456000 Oryza sativa ssp. japonica HOM05D002391 ORTHO05D004870 3.5e-162 576.2 542 58.7
MD07G1159700 Malus domestica HOM05D002391 ORTHO05D004870 1.0e-161 574.7 330 88.2
Zm00001eb402340 Zea mays HOM05D002391 ORTHO05D004870 3.1e-158 563.1 538 57.4
CAN.G732.5 Capsicum annuum HOM05D002391 ORTHO05D004870 2.0e-157 560.5 355 80.8
CDE02G1610 Ceratophyllum demersum HOM05D002391 ORTHO05D004870 2.1e-154 550.4 735 46.0
AagrBONN_evm.TU.Sc2ySwM_344.5215 Anthoceros agrestis HOM05D002391 ORTHO05D004870 1.0e-153 548.1 535 54.6
A03p50140 Brassica napus HOM05D002391 ORTHO05D004870 1.9e-152 543.9 392 73.7
Carub.0003s2971 Capsella rubella HOM05D002391 ORTHO05D004870 7.3e-152 542.0 646 49.5
Zm00001eb005370 Zea mays HOM05D002391 ORTHO05D004870 1.3e-145 521.2 504 56.3
vmacro23330 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 8.4e-140 501.9 328 80.8
PRCOL_00002903 Prasinoderma coloniale HOM05D002391 ORTHO05D004870 1.2e-130 471.5 734 37.9
vmacro13197 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 3.8e-124 449.9 491 55.4
Cre06.g287250 Chlamydomonas reinhardtii HOM05D002391 ORTHO05D004870 7.9e-122 442.2 838 33.2
TAR636G3264 Trochodendron aralioides HOM05D002391 ORTHO05D004870 3.1e-118 430.3 317 72.2
DCAR_022118 Daucus carota HOM05D002391 ORTHO05D004870 6.1e-114 416.0 317 71.0
BraA03t14107Z Brassica rapa HOM05D002391 ORTHO05D004870 7.9e-106 389.0 271 76.0
A05p28430 Brassica napus HOM05D002391 ORTHO05D004870 7.4e-104 382.5 267 76.8
BraA05t21723Z Brassica rapa HOM05D002391 ORTHO05D004870 2.8e-103 380.6 267 76.4
Cpa.g.sc193.14 Carica papaya HOM05D002391 ORTHO05D004870 8.2e-103 379.0 209 90.0
RcHm_v2.0_Chr1g0334501 Rosa chinensis HOM05D002391 ORTHO05D004870 1.2e-101 375.2 273 72.5
MBI12_g48127_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 1.8e-94 351.3 407 52.3
A08p28600 Brassica napus HOM05D002391 ORTHO05D004870 1.2e-93 348.6 235 77.4
BraA02t04916Z Brassica rapa HOM05D002391 ORTHO05D004870 3.8e-92 343.6 232 77.2
BraA02t08770Z Brassica rapa HOM05D002391 ORTHO05D004870 3.8e-92 343.6 232 77.2
PGSC0003DMG402031089 Solanum tuberosum HOM05D002391 ORTHO05D004870 3.0e-89 334.0 184 89.1
CAN.G732.6 Capsicum annuum HOM05D002391 ORTHO05D004870 3.7e-87 327.0 190 84.7
A07p33310 Brassica napus HOM05D002391 ORTHO05D004870 1.7e-84 318.2 211 79.1
HanXRQChr05g0132281 Helianthus annuus HOM05D002391 ORTHO05D004870 4.3e-51 207.2 123 82.9
Dinv08357 Davidia involucrata HOM05D002391 ORTHO05D004870 2.1e-50 204.9 187 59.4
Actinidia33035 Actinidia chinensis HOM05D002391 ORTHO05D004870 6.2e-50 203.4 122 86.9
FvH4_5g29942 Fragaria vesca HOM05D002391 ORTHO05D017667 2.3e-44 184.9 213 54.5
C02p38430 Brassica napus HOM05D002391 ORTHO05D017667 5.1e-44 183.7 148 65.5
FvH4_4g00571 Fragaria vesca HOM05D002391 ORTHO05D004870 3.3e-43 181.0 150 65.3
BolC2t09861H Brassica oleracea HOM05D002391 ORTHO05D017667 9.2e-38 162.9 128 68.0
BcaC03g16083 Brassica carinata HOM05D002391 ORTHO05D017667 9.9e-32 142.9 113 66.4
BcaC01g02750 Brassica carinata HOM05D002391 ORTHO05D004870 1.4e-30 139.0 143 59.4
Cfa025151 Carpinus fangiana HOM05D002391 ORTHO05D004870 1.9e-30 138.7 770 21.3
MBI12_g48128_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 5.4e-30 137.1 78 88.5
ECA246G0062 Erigeron canadensis HOM05D002391 ORTHO05D004870 2.7e-29 134.8 96 71.9
QL11p025959 Quercus lobata HOM05D002391 ORTHO05D004870 1.3e-20 105.9 259 37.1
FAN18G2005 Fragaria x ananassa HOM05D002391 ORTHO05D017667 2.3e-20 105.1 68 76.5
C03p60940 Brassica napus HOM05D002391 ORTHO05D004870 5.1e-20 104.0 81 69.1
BolC3t18356H Brassica oleracea HOM05D002391 ORTHO05D004870 5.1e-20 104.0 81 69.1
QL08p036835 Quercus lobata HOM05D000041 ORTHO05D000061 1.1e-19 102.8 78 65.4
TPR.G25208 Trifolium pratense HOM05D002391 ORTHO05D004870 4.3e-19 100.9 94 63.8
TPR.G22870 Trifolium pratense HOM05D002391 ORTHO05D011575 1.8e-17 95.5 88 60.2
QL06p008100 Quercus lobata HOM05D000161 ORTHO05D000111 2.4e-17 95.1 82 62.2
TPR.G19723 Trifolium pratense HOM05D002391 ORTHO05D004870 1.4e-14 85.9 59 76.3
TPR.G9012 Trifolium pratense HOM05D002391 ORTHO05D004870 9.3e-14 83.2 57 75.4
FAN19G0487 Fragaria x ananassa HOM05D002391 ORTHO05D017667 1.2e-13 82.8 51 76.5
C09p52400 Brassica napus HOM05D000073 ORTHO05D017582 2.9e-07 61.6 52 61.5
BolC1t04175H Brassica oleracea HOM05D000073 ORTHO05D017582 2.9e-07 61.6 52 61.5
BolC9t58109H Brassica oleracea HOM05D000073 ORTHO05D017582 2.9e-07 61.6 52 61.5
C09p10850 Brassica napus HOM05D000073 ORTHO05D017582 8.4e-07 60.1 52 59.6
TPR.G34125 Trifolium pratense HOM05D002391 ORTHO05D004870 4.2e-06 57.8 43 67.4
FvH4_5g30911 Fragaria vesca HOM05D002391 ORTHO05D017667 9.3e-06 56.6 43 72.1


User provided reference genes

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