Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B01833 Erythranthe guttata HOM05D008545 ORTHO05D010341 2.1e-59 232.3 116 100.0
MSTRG.17319 Avicennia marina HOM05D008545 ORTHO05D010341 3.2e-23 112.1 110 50.9
SGA_v2.0_scaffold5G02985 Striga asiatica HOM05D008545 ORTHO05D010341 7.3e-20 100.9 111 53.2
SalBow3G1564 Salvia bowleyana HOM05D008545 ORTHO05D010341 2.3e-13 79.3 109 44.0
Thecc.01G347700 Theobroma cacao HOM05D008545 ORTHO05D010341 3.0e-13 79.0 112 40.2
Potri.002G167500 Populus trichocarpa HOM05D008545 ORTHO05D010341 1.5e-12 76.6 107 37.4
Gohir.A07G139700 Gossypium hirsutum HOM05D008545 ORTHO05D010341 7.4e-12 74.3 112 36.6
Gohir.D07G144800 Gossypium hirsutum HOM05D008545 ORTHO05D010341 7.4e-12 74.3 112 36.6
Gorai.001G156800 Gossypium raimondii HOM05D008545 ORTHO05D010341 7.4e-12 74.3 112 36.6
Duzib138G0500 Durio zibethinus HOM05D008545 ORTHO05D010341 3.6e-11 72.0 112 35.7
Lj7A504G55 Lonicera japonica HOM05D008545 ORTHO05D010341 6.2e-11 71.2 109 38.5
CSS0024380 Camellia sinensis var. sinensis HOM05D008545 ORTHO05D010341 8.1e-11 70.9 112 38.4
Atru.chr5.619 Acer truncatum HOM05D008545 ORTHO05D010341 1.1e-10 70.5 114 36.8
Eucgr.D02345 Eucalyptus grandis HOM05D008545 ORTHO05D010341 1.1e-10 70.5 110 36.4
CANSAT56G3993 Cannabis sativa HOM05D008545 ORTHO05D010341 1.4e-10 70.1 110 34.5
MD01G1075500 Malus domestica HOM05D008545 ORTHO05D010341 1.4e-10 70.1 90 40.0
Peaxi162Scf00403g00718 Petunia axillaris HOM05D008545 ORTHO05D010341 2.4e-10 69.3 101 39.6
PGR031G2054 Punica granatum HOM05D008545 ORTHO05D010341 2.4e-10 69.3 116 37.1
DCAR_016077 Daucus carota HOM05D009167 ORTHO05D010341 3.1e-10 68.9 118 35.6
Nitab4.5_0002262g0100 Nicotiana tabacum HOM05D008545 ORTHO05D010341 5.3e-10 68.2 107 37.4
CAN.G310.5 Capsicum annuum HOM05D008545 ORTHO05D010341 1.2e-09 67.0 110 34.5
Lj9A592T71 Lonicera japonica HOM05D008545 ORTHO05D010341 1.5e-09 66.6 114 33.3
Solyc05g050240.3 Solanum lycopersicum HOM05D008545 ORTHO05D010341 1.5e-09 66.6 104 36.5
COL.COLO4_06334 Corchorus olitorius HOM05D002314 ORTHO05D002538 3.4e-09 65.5 102 39.2
Potri.014G094600 Populus trichocarpa HOM05D008545 ORTHO05D010341 3.4e-09 65.5 107 35.5
Sabra14G0069200 Salix brachista HOM05D008545 ORTHO05D010341 3.4e-09 65.5 107 35.5
PGSC0003DMG400033878 Solanum tuberosum HOM05D008545 ORTHO05D010341 5.8e-09 64.7 106 36.8
Dinv43892 Davidia involucrata HOM05D008545 ORTHO05D010341 9.9e-09 63.9 81 44.4
TAR629G2366 Trochodendron aralioides HOM05D008545 ORTHO05D010341 9.9e-09 63.9 107 35.5
SGA_v2.0_scaffold548G52844 Striga asiatica HOM05D046447 ORTHO05D010341 1.3e-08 63.5 114 40.4
Hma1.2p1_0384F.1_g141050 Hydrangea macrophylla HOM05D008545 ORTHO05D010341 1.7e-08 63.2 74 41.9
FvH4_7g15870 Fragaria vesca HOM05D008545 ORTHO05D010341 2.9e-08 62.4 92 40.2
FAN06G5050 Fragaria x ananassa HOM05D008545 ORTHO05D010341 2.9e-08 62.4 92 40.2
MD07G1144400 Malus domestica HOM05D008545 ORTHO05D010341 3.8e-08 62.0 90 36.7
RcHm_v2.0_Chr1g0358691 Rosa chinensis HOM05D008545 ORTHO05D010341 3.8e-08 62.0 89 40.4
FAN10G0919 Fragaria x ananassa HOM05D008545 ORTHO05D010341 8.4e-08 60.8 92 40.2
FAN10G3148 Fragaria x ananassa HOM05D008545 ORTHO05D010341 8.4e-08 60.8 92 40.2
FAN01G1302 Fragaria x ananassa HOM05D008545 ORTHO05D010341 2.4e-07 59.3 92 39.1
FAN03G1297 Fragaria x ananassa HOM05D008545 ORTHO05D010341 2.1e-06 56.2 81 39.5
GSVIVG01027047001 Vitis vinifera HOM05D008545 ORTHO05D010341 2.7e-06 55.8 107 31.8
Manes.01G249300 Manihot esculenta HOM05D008545 ORTHO05D010341 6.0e-06 54.7 84 35.7


User provided reference genes

Program Settings