Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 8.5e-227 790.0 410 100.0
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 3.3e-218 761.5 410 96.8
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 3.7e-214 748.0 410 95.4
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 3.0e-155 552.4 418 73.2
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 2.6e-151 539.3 437 68.4
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 5.7e-146 521.5 416 68.8
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 8.2e-137 491.1 361 72.9
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 7.7e-135 484.6 405 67.2
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 2.1e-132 476.5 410 64.6
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 2.3e-131 473.0 404 65.3
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 4.4e-130 468.8 416 64.4
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 4.8e-129 465.3 514 55.6
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 1.4e-128 463.8 408 64.2
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 4.1e-128 462.2 404 64.9
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 3.5e-127 459.1 407 63.6
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 2.9e-126 456.1 412 62.9
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 2.9e-126 456.1 412 62.9
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 6.5e-126 454.9 419 63.0
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 8.5e-126 454.5 414 63.3
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 1.1e-125 454.1 419 62.5
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 4.2e-125 452.2 401 63.6
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 7.2e-125 451.4 411 63.7
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 1.2e-124 450.7 414 62.3
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 3.6e-124 449.1 416 63.0
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 8.0e-124 448.0 399 61.9
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 8.0e-124 448.0 411 62.3
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 3.9e-123 445.7 409 61.4
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 3.3e-122 442.6 411 61.3
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 2.8e-121 439.5 410 62.4
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 4.1e-120 435.6 402 61.4
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 4.1e-120 435.6 412 60.9
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 9.1e-120 434.5 407 61.4
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 1.2e-119 434.1 412 60.0
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 1.6e-119 433.7 397 59.7
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 2.6e-119 433.0 414 59.2
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 5.9e-119 431.8 415 58.6
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 2.2e-118 429.9 406 60.3
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 3.8e-118 429.1 411 59.1
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 3.8e-118 429.1 391 60.6
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 8.5e-118 427.9 404 59.9
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 2.5e-117 426.4 399 60.9
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 1.2e-116 424.1 381 64.0
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 2.1e-116 423.3 411 60.3
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 2.1e-116 423.3 406 59.4
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 4.7e-116 422.2 420 57.4
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 5.2e-115 418.7 386 60.4
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 5.2e-115 418.7 420 58.1
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 1.2e-114 417.5 399 59.1
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 1.5e-114 417.2 421 58.0
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 4.4e-114 415.6 391 60.9
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 5.7e-114 415.2 404 58.7
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 7.5e-114 414.8 404 58.7
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 9.8e-114 414.5 333 68.2
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 2.2e-113 413.3 441 56.2
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 4.8e-113 412.1 396 58.6
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 6.3e-113 411.8 404 58.2
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 1.1e-112 411.0 416 56.7
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 5.4e-112 408.7 407 58.0
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.6e-111 407.1 384 59.1
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 2.0e-111 406.8 415 58.1
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 4.5e-111 405.6 432 54.2
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 7.7e-111 404.8 439 53.3
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 7.7e-111 404.8 384 58.9
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 1.3e-110 404.1 420 56.2
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 2.2e-110 403.3 419 57.5
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 2.2e-110 403.3 411 56.9
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 2.9e-110 402.9 409 57.5
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 1.9e-109 400.2 403 58.8
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 3.2e-109 399.4 404 57.9
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 1.6e-108 397.1 416 56.2
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 1.8e-107 393.7 410 55.1
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 2.6e-106 389.8 411 56.0
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 5.7e-106 388.7 449 51.4
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 8.3e-105 384.8 413 54.5
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 8.3e-105 384.8 415 53.5
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 3.1e-104 382.9 357 61.6
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 4.1e-104 382.5 417 53.0
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 4.5e-103 379.0 387 57.1
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 4.5e-103 379.0 357 60.2
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 1.7e-102 377.1 426 53.3
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 2.9e-102 376.3 408 54.7
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 8.6e-102 374.8 393 57.0
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 2.8e-100 369.8 377 59.7
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 5.2e-99 365.5 383 57.4
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 2.0e-98 363.6 411 53.0
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 3.2e-96 356.3 511 47.0
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 5.4e-96 355.5 405 51.9
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 1.6e-95 354.0 395 52.4
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 1.3e-94 350.9 403 51.6
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 3.9e-94 349.4 404 50.5
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 6.6e-94 348.6 413 51.8
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 3.3e-93 346.3 405 51.4
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 9.5e-93 344.7 405 51.1
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 6.2e-92 342.0 404 51.2
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 1.0e-91 341.3 410 50.7
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 7.5e-90 335.1 405 50.9
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 1.3e-89 334.3 332 56.6
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 2.9e-89 333.2 404 50.5
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 4.9e-89 332.4 440 46.6
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 3.2e-88 329.7 394 49.5
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 7.0e-88 328.6 394 50.0
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 1.2e-84 317.8 403 48.1
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 5.2e-83 312.4 423 46.3
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 3.4e-82 309.7 330 58.5
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 7.1e-80 302.0 402 48.0
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 8.6e-78 295.0 292 58.9
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 2.1e-76 290.4 368 49.5
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 4.7e-76 289.3 373 50.7
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 3.7e-73 279.6 404 46.5
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 2.4e-67 260.4 349 49.0
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 7.8e-63 245.4 321 48.9
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 1.6e-60 237.7 340 46.5
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 2.8e-60 236.9 284 48.6
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 1.9e-56 224.2 240 55.8
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 2.4e-56 223.8 322 48.4
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 3.5e-55 219.9 444 38.5
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 3.3e-53 213.4 294 47.3
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 5.5e-48 196.1 217 53.9
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 2.5e-40 170.6 267 43.8
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 3.5e-31 140.2 95 68.4
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 5.1e-30 136.3 148 51.4
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 5.1e-30 136.3 148 51.4
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 3.1e-27 127.1 349 32.1
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 1.4e-24 118.2 290 33.1
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 8.8e-22 109.0 98 67.3
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 8.2e-20 102.4 143 44.8
Gohir.A03G093200 Gossypium hirsutum HOM05D005133 ORTHO05D006685 1.8e-19 101.3 169 42.6
Rhsim01G0168000 Rhododendron simsii HOM05D005133 ORTHO05D006685 4.1e-19 100.1 71 80.3
Glyma.11G125567 Glycine max HOM05D005133 ORTHO05D006685 5.0e-17 93.2 128 43.8
vmacro01745 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.9e-16 91.3 149 45.0
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 7.2e-16 89.4 65 72.3
SMO117G0103 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 1.6e-15 88.2 173 41.0
C04p01870 Brassica napus HOM05D005133 ORTHO05D006685 2.4e-11 74.3 39 76.9
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 7.7e-10 69.3 109 40.4
FvH4_2g33570 Fragaria vesca HOM05D000073 ORTHO05D015767 6.5e-09 66.2 89 46.1
Rhsim01G0167900 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.2e-07 62.0 42 78.6
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 1.0e-06 58.9 118 35.6


User provided reference genes

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