Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 5.3e-145 517.7 266 100.0
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 9.8e-115 417.2 266 80.5
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 8.3e-114 414.1 267 81.3
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 1.0e-108 397.1 267 76.0
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 1.5e-107 393.3 280 74.3
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 4.4e-107 391.7 268 76.9
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.1e-105 387.1 266 75.9
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 2.4e-105 386.0 266 75.2
Sopen09g002430 Solanum pennellii HOM05D006032 ORTHO05D007544 4.1e-105 385.2 267 76.0
Oeu054338.1 Olea europaea HOM05D006032 ORTHO05D007544 2.7e-104 382.5 267 76.4
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 5.9e-104 381.3 264 74.2
PGSC0003DMG400001748 Solanum tuberosum HOM05D006032 ORTHO05D007544 5.9e-104 381.3 266 75.6
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 7.8e-104 380.9 262 74.8
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 1.0e-103 380.6 268 73.9
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 3.8e-103 378.6 269 72.1
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 6.6e-103 377.9 267 73.8
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 9.5e-102 374.0 265 71.7
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 9.5e-102 374.0 260 72.7
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 2.8e-101 372.5 268 72.4
ECA236G4677 Erigeron canadensis HOM05D006032 ORTHO05D007544 3.6e-101 372.1 267 72.7
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 4.7e-101 371.7 267 71.5
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 6.1e-101 371.3 267 71.5
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 1.0e-100 370.5 267 71.9
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 8.9e-100 367.5 263 71.9
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 3.4e-99 365.5 265 72.1
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 4.4e-99 365.2 265 72.1
Lsat_1_v5_gn_7_3801 Lactuca sativa HOM05D006032 ORTHO05D007544 5.7e-99 364.8 267 72.7
GSVIVG01027006001 Vitis vinifera HOM05D006032 ORTHO05D007544 1.7e-98 363.2 269 68.8
Rhsim12G0138500 Rhododendron simsii HOM05D006032 ORTHO05D007544 1.4e-97 360.1 270 70.7
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 1.6e-96 356.7 272 68.4
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 1.6e-96 356.7 274 68.6
Glyma.09G255500 Glycine max HOM05D006032 ORTHO05D007544 2.0e-96 356.3 271 68.3
Glyma.18G237400 Glycine max HOM05D006032 ORTHO05D007544 2.0e-96 356.3 269 68.0
ClCG05G001320 Citrullus lanatus HOM05D006032 ORTHO05D007544 2.7e-96 355.9 272 69.9
CANSAT56G0440 Cannabis sativa HOM05D006032 ORTHO05D007544 5.9e-96 354.8 269 69.9
Thhalv10028885m.g Eutrema salsugineum HOM05D006032 ORTHO05D007544 1.3e-95 353.6 272 68.0
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 1.7e-95 353.2 260 69.6
CsaV3_3G008690 Cucumis sativus L. HOM05D006032 ORTHO05D007544 1.7e-95 353.2 274 69.7
Nn1g01650 Nelumbo nucifera HOM05D006032 ORTHO05D007544 1.7e-95 353.2 263 66.9
QL04p055082 Quercus lobata HOM05D006032 ORTHO05D007544 1.7e-95 353.2 265 69.4
AL6G52090 Arabidopsis lyrata HOM05D006032 ORTHO05D007544 2.3e-95 352.8 271 67.2
BcaC01g06855 Brassica carinata HOM05D006032 ORTHO05D007544 2.3e-95 352.8 260 70.0
BolC3t16171H Brassica oleracea HOM05D006032 ORTHO05D007544 2.3e-95 352.8 260 70.0
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 2.3e-95 352.8 264 67.4
Carub.0006s3637 Capsella rubella HOM05D006032 ORTHO05D007544 3.9e-95 352.1 263 68.1
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 3.9e-95 352.1 265 68.3
BcaB01g02282 Brassica carinata HOM05D006032 ORTHO05D007544 5.0e-95 351.7 262 69.5
C03p38990 Brassica napus HOM05D006032 ORTHO05D007544 6.6e-95 351.3 260 69.6
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 6.6e-95 351.3 267 68.2
Sed0022476 Sechium edule HOM05D006032 ORTHO05D007544 6.6e-95 351.3 275 69.8
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 1.1e-94 350.5 275 68.4
AT4G01310 Arabidopsis thaliana HOM05D006032 ORTHO05D007544 1.5e-94 350.1 260 68.5
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 1.5e-94 350.1 262 68.3
VMungo1383G0296 Vigna mungo HOM05D006032 ORTHO05D007544 1.5e-94 350.1 270 67.8
CiPaw.01G065600 Carya illinoinensis HOM05D006032 ORTHO05D007544 3.3e-94 349.0 264 67.8
Sp6g00830 Schrenkiella parvula HOM05D006032 ORTHO05D007544 3.3e-94 349.0 272 66.9
Gohir.A07G140700 Gossypium hirsutum HOM05D006032 ORTHO05D007544 4.3e-94 348.6 262 68.3
Gorai.001G158300 Gossypium raimondii HOM05D006032 ORTHO05D007544 4.3e-94 348.6 262 68.3
Lj4g0026145 Lotus japonicus HOM05D006032 ORTHO05D007544 4.3e-94 348.6 261 68.6
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 5.6e-94 348.2 216 77.8
Gohir.D07G146100 Gossypium hirsutum HOM05D006032 ORTHO05D007544 7.3e-94 347.8 262 68.3
Aqoxy7G00233 Aquilegia oxysepala HOM05D006032 ORTHO05D007544 1.2e-93 347.1 263 69.2
BcaC04g24141 Brassica carinata HOM05D006032 ORTHO05D007544 8.0e-93 344.4 268 66.8
Prupe.2G175800 Prunus persica HOM05D006032 ORTHO05D007544 1.1e-92 344.0 263 70.7
Phvul.008G059200 Phaseolus vulgaris HOM05D006032 ORTHO05D007544 1.4e-92 343.6 270 65.9
CARHR249010 Cardamine hirsuta HOM05D006032 ORTHO05D007544 2.3e-92 342.8 268 66.4
Potri.002G154600 Populus trichocarpa HOM05D006032 ORTHO05D007544 2.3e-92 342.8 265 66.4
Sabra02G0122600 Salix brachista HOM05D006032 ORTHO05D007544 4.0e-92 342.0 268 65.3
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.2e-91 340.5 258 70.2
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.2e-91 340.5 258 70.2
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.2e-91 340.5 258 70.2
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 2.6e-91 339.3 258 69.8
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 3.4e-91 339.0 258 69.8
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 3.4e-91 339.0 258 69.8
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 3.4e-91 339.0 254 70.9
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 3.4e-91 339.0 261 65.5
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 5.8e-91 338.2 262 66.4
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 7.5e-91 337.8 262 66.8
PSO782G5129 Papaver somniferum HOM05D006032 ORTHO05D007544 2.9e-90 335.9 271 64.9
MD01G1069800 Malus domestica HOM05D006032 ORTHO05D007544 4.9e-90 335.1 255 69.8
TAR629G0912 Trochodendron aralioides HOM05D006032 ORTHO05D007544 6.4e-90 334.7 226 72.6
MD07G1132700 Malus domestica HOM05D006032 ORTHO05D007544 3.2e-89 332.4 255 69.8
PSO478G3538 Papaver somniferum HOM05D006032 ORTHO05D007544 2.0e-88 329.7 272 63.6
Psat3g107160 Pisum sativum HOM05D006032 ORTHO05D007544 3.5e-88 328.9 269 65.1
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 6.0e-88 328.2 254 67.3
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 7.8e-88 327.8 251 68.1
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 3.0e-87 325.9 242 69.0
Ca_00819_v3 Cicer arietinum L. HOM05D006032 ORTHO05D007544 3.0e-87 325.9 272 64.3
TPR.G22296 Trifolium pratense HOM05D006032 ORTHO05D007544 3.0e-87 325.9 269 65.1
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 5.0e-87 325.1 266 64.7
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 6.6e-87 324.7 252 66.7
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 6.6e-87 324.7 252 66.7
ATR0661G584 Amborella trichopoda HOM05D006032 ORTHO05D007544 8.6e-87 324.3 263 63.5
CDE04G3178 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 1.9e-86 323.2 244 64.8
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 5.6e-86 321.6 309 58.6
CDE12G0723 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 8.1e-85 317.8 200 75.0
Hund27251 Selenicereus undatus HOM05D006032 ORTHO05D007544 1.7e-82 310.1 231 67.5
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 4.9e-82 308.5 262 63.0
HPP92_025634 Vanilla planifolia HOM05D006032 ORTHO05D007544 1.9e-81 306.6 219 68.0
Potri.014G089100 Populus trichocarpa HOM05D006032 ORTHO05D007544 2.7e-80 302.8 261 60.5
Peaxi162Scf00815g00338 Petunia axillaris HOM05D006032 ORTHO05D007544 3.9e-79 298.9 183 80.3
Os03g0125000 Oryza sativa ssp. japonica HOM05D006032 ORTHO05D007544 3.4e-75 285.8 217 64.5
vmacro20901 Vaccinium macrocarpon HOM05D006032 ORTHO05D007544 2.2e-74 283.1 270 60.0
Zm00001eb001840 Zea mays HOM05D006032 ORTHO05D007544 2.2e-74 283.1 222 63.5
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 7.8e-72 274.6 232 62.9
A03p31970 Brassica napus HOM05D006032 ORTHO05D007544 4.0e-68 262.3 201 68.7
BraA03t12369Z Brassica rapa HOM05D006032 ORTHO05D007544 4.0e-68 262.3 201 68.7
FAN01G2970 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.6e-67 259.6 189 71.4
Mapoly0001s0334 Marchantia polymorpha HOM05D006032 ORTHO05D007544 2.9e-66 256.1 210 61.0
MBI04_g41504_MAGBIO Magnolia biondii HOM05D006032 ORTHO05D007544 1.1e-65 254.2 217 60.4
SMO358G0099 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 2.7e-64 249.6 180 65.6
AagrBONN_evm.TU.Sc2ySwM_228.1445 Anthoceros agrestis HOM05D006032 ORTHO05D007544 8.7e-63 244.6 180 62.8
Solyc09g007560.4 Solanum lycopersicum HOM05D006032 ORTHO05D007544 1.1e-62 244.2 175 76.6
Pp3c1_25850 Physcomitrium patens HOM05D006032 ORTHO05D007544 1.5e-62 243.8 247 50.6
Pp3c2_17110 Physcomitrium patens HOM05D006032 ORTHO05D007544 5.6e-62 241.9 231 52.4
MSTRG.17292 Avicennia marina HOM05D006032 ORTHO05D007544 2.3e-55 219.9 132 84.1
SEGI_08351 Sequoiadendron giganteum HOM05D006032 ORTHO05D007544 1.3e-53 214.2 141 73.0
Rhsim01G0165400 Rhododendron simsii HOM05D006032 ORTHO05D007544 6.5e-42 175.3 154 66.2
Haze_27649 Corylus avellana HOM05D006032 ORTHO05D007544 3.5e-40 169.5 153 49.7
Cfa021143 Carpinus fangiana HOM05D006032 ORTHO05D001488 3.0e-39 166.4 162 45.7
COL.COLO4_27391 Corchorus olitorius HOM05D006032 ORTHO05D007544 3.0e-39 166.4 109 75.2
C02p38190 Brassica napus HOM05D006032 ORTHO05D007544 6.3e-37 158.7 262 40.1
BolC2t09834H Brassica oleracea HOM05D006032 ORTHO05D007544 6.3e-37 158.7 262 40.1
BcaC03g16053 Brassica carinata HOM05D006032 ORTHO05D007544 1.1e-36 157.9 262 40.1
Sabra14G0064700 Salix brachista HOM05D006032 ORTHO05D007544 1.3e-34 151.0 115 62.6
Actinidia02824 Actinidia chinensis HOM05D006032 ORTHO05D007544 6.3e-29 132.1 89 75.3
Nitab4.5_0000681g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 5.0e-26 122.5 75 81.3
SMO196G0051 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 9.4e-25 118.2 179 35.2
Nitab4.5_0000681g0060 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.3e-21 107.8 71 73.2
VMungo1309G2152 Vigna mungo HOM05D006032 ORTHO05D007544 1.9e-17 94.0 70 64.3
Cfa024600 Carpinus fangiana HOM05D006032 ORTHO05D122942 3.9e-15 86.3 169 30.8
VMungo0647G0507 Vigna mungo HOM05D006032 ORTHO05D007227 1.1e-14 84.7 66 62.1
Rhsim12G0138600 Rhododendron simsii HOM05D006032 ORTHO05D007544 2.0e-14 84.0 89 61.8
Psat2g092280 Pisum sativum HOM05D006032 ORTHO05D007544 8.2e-13 78.6 60 63.3
unitig_8.g3788 Utricularia gibba HOM05D006032 ORTHO05D007544 3.5e-11 73.2 102 45.1
Dinv43855 Davidia involucrata HOM05D006032 ORTHO05D007544 2.9e-10 70.1 39 82.1
Sc24g0002240 Simmondsia chinensis HOM05D006032 ORTHO05D007544 1.2e-06 58.2 46 58.7
FvH4_5g19211 Fragaria vesca HOM05D006032 ORTHO05D197553 1.5e-06 57.8 47 63.8


User provided reference genes

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