Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B01742 Erythranthe guttata HOM05D005367 ORTHO05D006328 4.3e-92 341.3 169 100.0
MSTRG.20826 Avicennia marina HOM05D005367 ORTHO05D006328 2.8e-51 205.7 164 61.0
SalBow3G2019 Salvia bowleyana HOM05D005367 ORTHO05D006328 1.1e-50 203.8 164 64.6
Oeu056369.1 Olea europaea HOM05D005367 ORTHO05D006328 1.3e-40 170.2 157 58.6
SGA_v2.0_scaffold11G05663 Striga asiatica HOM05D000368 ORTHO05D006328 7.2e-39 164.5 170 52.4
unitig_61.g26388 Utricularia gibba HOM05D005367 ORTHO05D006328 3.4e-36 155.6 166 51.8
Hma1.2p1_0001F.1_g001380 Hydrangea macrophylla HOM05D005367 ORTHO05D006328 5.7e-36 154.8 171 52.6
Dinv43805 Davidia involucrata HOM05D005367 ORTHO05D006328 3.7e-35 152.1 172 49.4
Actinidia20916 Actinidia chinensis HOM05D005367 ORTHO05D006328 1.8e-34 149.8 161 51.6
Thecc.01G360700 Theobroma cacao HOM05D005367 ORTHO05D006328 1.8e-34 149.8 158 50.6
Gohir.A11G088100 Gossypium hirsutum HOM05D005367 ORTHO05D006328 2.0e-33 146.4 169 49.1
CSS0040093 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 3.5e-33 145.6 161 54.0
CSS0033809 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 5.9e-33 144.8 169 52.1
Gohir.D11G092400 Gossypium hirsutum HOM05D005367 ORTHO05D006328 5.9e-33 144.8 169 48.5
Gorai.007G098700 Gossypium raimondii HOM05D005367 ORTHO05D006328 1.7e-32 143.3 169 47.9
Nitab4.5_0001702g0150 Nicotiana tabacum HOM05D005367 ORTHO05D006328 2.9e-32 142.5 169 47.3
GSVIVG01026893001 Vitis vinifera HOM05D005367 ORTHO05D006328 6.6e-32 141.4 154 50.0
Duzib133G0249 Durio zibethinus HOM05D005367 ORTHO05D006328 8.6e-32 141.0 156 50.6
COL.COLO4_12698 Corchorus olitorius HOM05D005367 ORTHO05D006328 1.1e-31 140.6 168 51.8
Prupe.2G167900 Prunus persica HOM05D005367 ORTHO05D006328 1.1e-31 140.6 162 49.4
TWI14G0016 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 3.3e-31 139.0 168 50.0
Cc02_g37850 Coffea canephora HOM05D005367 ORTHO05D006328 4.3e-31 138.7 162 45.7
QL08p049031 Quercus lobata HOM05D005367 ORTHO05D006328 7.3e-31 137.9 163 49.1
Gohir.D08G152300 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.2e-30 137.1 167 46.7
Eucgr.E00158 Eucalyptus grandis HOM05D005367 ORTHO05D006328 2.1e-30 136.3 156 49.4
Gorai.004G158200 Gossypium raimondii HOM05D005367 ORTHO05D006328 2.8e-30 136.0 169 46.2
HanXRQChr16g0522831 Helianthus annuus HOM05D005367 ORTHO05D006328 2.8e-30 136.0 173 45.1
Nitab4.5_0008050g0010 Nicotiana tabacum HOM05D005367 ORTHO05D006328 2.8e-30 136.0 167 44.9
Sc01g0003360 Simmondsia chinensis HOM05D005367 ORTHO05D006328 2.8e-30 136.0 160 48.1
Haze_15487 Corylus avellana HOM05D005367 ORTHO05D006328 3.6e-30 135.6 180 46.7
Atru.chr5.466 Acer truncatum HOM05D005367 ORTHO05D006328 1.0e-29 134.0 152 46.7
RcHm_v2.0_Chr1g0355051 Rosa chinensis HOM05D005367 ORTHO05D006328 1.0e-29 134.0 157 45.2
Lj9A582T87 Lonicera japonica HOM05D005367 ORTHO05D006328 1.4e-29 133.7 182 44.0
MD07G1139200 Malus domestica HOM05D005367 ORTHO05D006328 1.4e-29 133.7 159 47.2
PGR031G3282 Punica granatum HOM05D005367 ORTHO05D006328 1.4e-29 133.7 164 47.6
Lalb_Chr24g0401631 Lupinus albus HOM05D005367 ORTHO05D006328 4.0e-29 132.1 160 45.0
vmacro13291 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 4.0e-29 132.1 157 49.0
Ciclev10021865m.g Citrus clementina HOM05D005367 ORTHO05D006328 5.2e-29 131.7 188 42.0
MD01G1057500 Malus domestica HOM05D005367 ORTHO05D006328 6.8e-29 131.3 158 46.2
Sopen05g028210 Solanum pennellii HOM05D005367 ORTHO05D006328 6.8e-29 131.3 172 42.4
Nn1g01501 Nelumbo nucifera HOM05D005367 ORTHO05D006328 8.9e-29 131.0 174 41.4
PGSC0003DMG400021656 Solanum tuberosum HOM05D005367 ORTHO05D006328 8.9e-29 131.0 172 41.9
Cfa003939 Carpinus fangiana HOM05D005367 ORTHO05D006328 1.2e-28 130.6 182 44.5
Eucgr.D02282 Eucalyptus grandis HOM05D005367 ORTHO05D006328 1.2e-28 130.6 161 46.0
Solyc05g049880.3 Solanum lycopersicum HOM05D005367 ORTHO05D006328 1.2e-28 130.6 172 42.4
Cpa.g.sc18.245 Carica papaya HOM05D005367 ORTHO05D006328 1.5e-28 130.2 170 44.7
Lalb_Chr01g0011531 Lupinus albus HOM05D005367 ORTHO05D006328 1.5e-28 130.2 160 44.4
Manes.05G036200 Manihot esculenta HOM05D005367 ORTHO05D006328 2.6e-28 129.4 165 47.3
CiPaw.02G029900 Carya illinoinensis HOM05D005367 ORTHO05D006328 3.4e-28 129.0 184 40.8
Gohir.A08G130800 Gossypium hirsutum HOM05D005367 ORTHO05D006328 3.4e-28 129.0 169 43.8
Manes.01G258500 Manihot esculenta HOM05D005367 ORTHO05D006328 3.4e-28 129.0 165 44.2
TAR375G0799 Trochodendron aralioides HOM05D005367 ORTHO05D006328 2.2e-27 126.3 171 44.4
Potri.014G082600 Populus trichocarpa HOM05D005367 ORTHO05D006328 6.4e-27 124.8 166 44.6
arahy.Tifrunner.gnm1.ann1.G5US7K Arachis hypogaea HOM05D005367 ORTHO05D006328 8.3e-27 124.4 161 42.2
arahy.Tifrunner.gnm1.ann1.D8DQXR Arachis hypogaea HOM05D005367 ORTHO05D006328 1.4e-26 123.6 161 41.6
RcHm_v2.0_Chr1g0354801 Rosa chinensis HOM05D005367 ORTHO05D006328 1.9e-26 123.2 157 42.7
ClCG06G003800 Citrullus lanatus HOM05D005367 ORTHO05D006328 2.4e-26 122.9 181 43.1
Glyma.18G231900 Glycine max HOM05D005367 ORTHO05D006328 2.4e-26 122.9 171 39.8
TWI59G0064 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 2.4e-26 122.9 175 45.1
Lsat_1_v5_gn_4_36280 Lactuca sativa HOM05D005367 ORTHO05D006328 3.2e-26 122.5 170 44.1
THA.LOC104801446 Tarenaya hassleriana HOM05D005367 ORTHO05D006328 3.2e-26 122.5 161 44.1
PGR042G0868 Punica granatum HOM05D005367 ORTHO05D006328 4.1e-26 122.1 174 43.7
Hund16930 Selenicereus undatus HOM05D005367 ORTHO05D006328 4.1e-26 122.1 165 39.4
MELO3C021217.2 Cucumis melo HOM05D005367 ORTHO05D006328 5.4e-26 121.7 169 43.2
Potri.002G158500 Populus trichocarpa HOM05D005367 ORTHO05D006328 9.2e-26 120.9 160 43.8
Peaxi162Scf00191g01425 Petunia axillaris HOM05D005367 ORTHO05D006328 1.6e-25 120.2 184 40.2
Sp1g00570 Schrenkiella parvula HOM05D005367 ORTHO05D006328 1.6e-25 120.2 152 43.4
CsaV3_6G000470 Cucumis sativus L. HOM05D005367 ORTHO05D006328 2.0e-25 119.8 187 42.8
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 3.5e-25 119.0 157 43.3
BolC8t52897H Brassica oleracea HOM05D000368 ORTHO05D000289 3.5e-25 119.0 157 43.3
FAN03G1221 Fragaria x ananassa HOM05D005367 ORTHO05D006328 4.6e-25 118.6 159 42.1
Ca_07909_v3 Cicer arietinum L. HOM05D005367 ORTHO05D006328 6.0e-25 118.2 163 42.3
Thhalv10008538m.g Eutrema salsugineum HOM05D005367 ORTHO05D006328 1.3e-24 117.1 158 44.9
Manes.06G148200 Manihot esculenta HOM05D005367 ORTHO05D006328 1.3e-24 117.1 167 41.3
TPR.G37815 Trifolium pratense HOM05D005367 ORTHO05D006328 1.3e-24 117.1 155 42.6
EL10Ac1g00429 Beta vulgaris HOM05D005367 ORTHO05D006328 1.7e-24 116.7 154 40.9
FAN10G0042 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.7e-24 116.7 159 41.5
ECA234G3275 Erigeron canadensis HOM05D005367 ORTHO05D006328 2.3e-24 116.3 163 44.2
FAN01G2456 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.3e-24 116.3 159 41.5
Carub.0001s0048 Capsella rubella HOM05D005367 ORTHO05D006328 3.0e-24 115.9 166 39.8
Nn6g33454 Nelumbo nucifera HOM05D005367 ORTHO05D006328 3.0e-24 115.9 175 41.1
Atru.chr1.440 Acer truncatum HOM05D005367 ORTHO05D006328 3.9e-24 115.5 164 42.7
RcHm_v2.0_Chr1g0377581 Rosa chinensis HOM05D005367 ORTHO05D006328 3.9e-24 115.5 157 40.1
Lj1g0004821 Lotus japonicus HOM05D005367 ORTHO05D006328 5.0e-24 115.2 161 42.2
Medtr7g077380 Medicago truncatula HOM05D005367 ORTHO05D006328 6.6e-24 114.8 159 42.1
CANSAT56G3377 Cannabis sativa HOM05D005367 ORTHO05D006328 8.6e-24 114.4 151 40.4
FvH4_7g14150 Fragaria vesca HOM05D005367 ORTHO05D006328 8.6e-24 114.4 159 41.5
QL09p013904 Quercus lobata HOM05D005367 ORTHO05D006328 8.6e-24 114.4 171 40.4
FAN06G0563 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.1e-23 114.0 159 41.5
FAN10G3657 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.9e-23 113.2 160 41.2
Sed0017642 Sechium edule HOM05D005367 ORTHO05D006328 1.9e-23 113.2 160 46.2
BraA09t42260Z Brassica rapa HOM05D005367 ORTHO05D006328 2.5e-23 112.8 153 41.8
AUR62004342 Chenopodium quinoa HOM05D005367 ORTHO05D006328 2.5e-23 112.8 141 46.8
Psat3g109400 Pisum sativum HOM05D005367 ORTHO05D006328 5.6e-23 111.7 159 42.8
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 1.6e-22 110.2 176 40.3
Duzib205G1257 Durio zibethinus HOM05D005367 ORTHO05D006328 2.1e-22 109.8 161 41.0
FAN10G4254 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.8e-22 109.4 169 37.9
VMungo1383G2792 Vigna mungo HOM05D005367 ORTHO05D006328 4.7e-22 108.6 165 39.4
Atru.chr1.441 Acer truncatum HOM05D005367 ORTHO05D006328 8.0e-22 107.8 171 39.8
FvH4_7g29600 Fragaria vesca HOM05D005367 ORTHO05D006328 8.0e-22 107.8 169 37.9
AL1G10610 Arabidopsis lyrata HOM05D005367 ORTHO05D006328 1.1e-21 107.5 155 41.9
Ah.05g180710 Amaranthus hybridus HOM05D005367 ORTHO05D006328 1.8e-21 106.7 152 40.1
MD01G1202200 Malus domestica HOM05D005367 ORTHO05D006328 1.8e-21 106.7 155 41.3
Phvul.008G065800 Phaseolus vulgaris HOM05D005367 ORTHO05D006328 2.3e-21 106.3 167 40.7
Ciclev10006075m.g Citrus clementina HOM05D005367 ORTHO05D006328 1.2e-20 104.0 155 39.4
vmacro06668 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 1.5e-20 103.6 162 38.9
DCAR_010300 Daucus carota HOM05D005367 ORTHO05D006328 2.0e-20 103.2 158 38.6
AT1G01730 Arabidopsis thaliana HOM05D005367 ORTHO05D006328 5.8e-20 101.7 154 39.0
COL.COLO4_14330 Corchorus olitorius HOM05D005367 ORTHO05D006328 2.9e-19 99.4 200 34.0
PSO478G0766 Papaver somniferum HOM05D005367 ORTHO05D006328 3.7e-19 99.0 168 36.3
HPP92_022052 Vanilla planifolia HOM05D005367 ORTHO05D006328 3.7e-19 99.0 156 37.2
HPP92_027620 Vanilla planifolia HOM05D005367 ORTHO05D006328 3.7e-19 99.0 156 37.2
VMungo1383G2823 Vigna mungo HOM05D005367 ORTHO05D006328 6.4e-19 98.2 158 36.1
PSO782G1827 Papaver somniferum HOM05D005367 ORTHO05D006328 1.9e-18 96.7 165 35.2
Aqoxy7G00339 Aquilegia oxysepala HOM05D005367 ORTHO05D006328 2.4e-18 96.3 147 40.1
FAN03G1577 Fragaria x ananassa HOM05D005367 ORTHO05D006328 4.3e-15 85.5 139 35.3
Rhsim03G0187100 Rhododendron simsii HOM05D005367 ORTHO05D006328 5.6e-15 85.1 177 34.5
FAN10G0871 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.6e-14 83.6 86 47.7
FAN10G2377 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.1e-14 83.2 68 55.9
FAN28G3009 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.1e-14 83.2 68 55.9
FAN10G3879 Fragaria x ananassa HOM05D005367 ORTHO05D006328 6.2e-14 81.6 86 46.5
MBI17_g24635_MAGBIO Magnolia biondii HOM05D005367 ORTHO05D006328 1.2e-12 77.4 60 55.0
Potri.015G145000 Populus trichocarpa HOM05D005367 ORTHO05D006328 1.5e-12 77.0 117 36.8
Dinv35219 Davidia involucrata HOM05D005367 ORTHO05D006328 2.0e-12 76.6 79 45.6
Actinidia34119 Actinidia chinensis HOM05D005367 ORTHO05D006328 2.6e-12 76.3 148 33.8
Sabra14G0059900 Salix brachista HOM05D005367 ORTHO05D006328 3.4e-12 75.9 215 30.7
AUR62022549 Chenopodium quinoa HOM05D005367 ORTHO05D006328 3.7e-11 72.4 110 43.6
FAN06G3705 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.7e-09 66.2 169 30.2
FAN06G4288 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.7e-09 66.2 169 30.2
AUR62022543 Chenopodium quinoa HOM05D000713 ORTHO05D000547 7.8e-09 64.7 53 52.8
Aa31LG1G11100 Aethionema arabicum HOM05D005367 ORTHO05D006328 1.3e-08 63.9 51 56.9
DCAR_000242 Daucus carota HOM05D005367 ORTHO05D006328 2.3e-08 63.2 107 38.3
Prupe.2G295600 Prunus persica HOM05D005367 ORTHO05D006328 2.3e-08 63.2 115 35.7
Sabra02G0126000 Salix brachista HOM05D005367 ORTHO05D006328 2.3e-08 63.2 56 51.8
CARHR000590 Cardamine hirsuta HOM05D005367 ORTHO05D006328 5.1e-08 62.0 106 36.8
Mapoly0101s0052 Marchantia polymorpha HOM05D019105 ORTHO05D018335 5.6e-07 58.5 143 30.1
Os04g0556900 Oryza sativa ssp. japonica HOM05D005367 ORTHO05D006328 7.3e-07 58.2 173 26.6
FAN10G1555 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.6e-06 57.0 105 35.2
Aa31LG1G11110 Aethionema arabicum HOM05D005367 ORTHO05D006328 2.1e-06 56.6 99 34.3
Mapoly0093s0070 Marchantia polymorpha HOM05D019105 ORTHO05D018335 8.1e-06 54.7 63 34.9


User provided reference genes

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