Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B01688 Erythranthe guttata HOM05D006418 ORTHO05D008063 2.6e-197 691.8 336 100.0
FAN01G2003 Fragaria x ananassa HOM05D006418 ORTHO05D008063 1.3e-156 556.6 335 79.1
FvH4_7g13130 Fragaria vesca HOM05D006418 ORTHO05D008063 3.8e-156 555.1 335 79.4
FAN06G0540 Fragaria x ananassa HOM05D006418 ORTHO05D008063 3.8e-156 555.1 335 79.4
FAN06G3976 Fragaria x ananassa HOM05D006418 ORTHO05D008063 3.8e-156 555.1 335 79.4
FAN10G2923 Fragaria x ananassa HOM05D006418 ORTHO05D008063 1.4e-155 553.1 335 79.4
FAN03G2411 Fragaria x ananassa HOM05D006418 ORTHO05D008063 3.2e-155 552.0 335 79.1
Cc02_g37230 Coffea canephora HOM05D006418 ORTHO05D008063 7.1e-155 550.8 333 79.3
RcHm_v2.0_Chr1g0352261 Rosa chinensis HOM05D006418 ORTHO05D008063 3.5e-154 548.5 335 79.1
Sopen01g037560 Solanum pennellii HOM05D006418 ORTHO05D008063 3.5e-154 548.5 336 77.4
Solyc01g091780.4 Solanum lycopersicum HOM05D006418 ORTHO05D008063 1.0e-153 547.0 336 77.1
CANSAT56G2190 Cannabis sativa HOM05D006418 ORTHO05D008063 2.3e-153 545.8 331 77.9
CiPaw.01G053600 Carya illinoinensis HOM05D006418 ORTHO05D008063 6.7e-153 544.3 335 78.5
GSVIVG01027527001 Vitis vinifera HOM05D006418 ORTHO05D008063 1.5e-152 543.1 332 78.0
PGSC0003DMG400017054 Solanum tuberosum HOM05D006418 ORTHO05D008063 3.3e-152 542.0 336 76.5
Gorai.007G095100 Gossypium raimondii HOM05D006418 ORTHO05D008063 4.3e-152 541.6 336 76.2
Duzib138G1515 Durio zibethinus HOM05D006418 ORTHO05D008063 5.7e-152 541.2 336 76.2
Nn1g01350 Nelumbo nucifera HOM05D006418 ORTHO05D008063 7.4e-152 540.8 331 77.9
TAR375G0873 Trochodendron aralioides HOM05D006418 ORTHO05D008063 1.6e-151 539.7 305 82.0
Nitab4.5_0010430g0060 Nicotiana tabacum HOM05D006418 ORTHO05D008063 2.8e-151 538.9 339 76.1
vmacro13338 Vaccinium macrocarpon HOM05D006418 ORTHO05D008063 2.8e-151 538.9 299 83.9
Gohir.D11G089100 Gossypium hirsutum HOM05D006418 ORTHO05D008063 3.7e-151 538.5 336 75.9
Hma1.2p1_0033F.1_g020630 Hydrangea macrophylla HOM05D006418 ORTHO05D008063 3.7e-151 538.5 298 83.9
Rhsim07G0021100 Rhododendron simsii HOM05D006418 ORTHO05D008063 3.7e-151 538.5 302 83.1
MD07G1128500 Malus domestica HOM05D006418 ORTHO05D008063 4.8e-151 538.1 337 76.9
HanXRQChr06g0169031 Helianthus annuus HOM05D006418 ORTHO05D008063 2.4e-150 535.8 335 76.4
CAN.G170.50 Capsicum annuum HOM05D006418 ORTHO05D008063 4.1e-150 535.0 328 77.7
Potri.002G153100 Populus trichocarpa HOM05D006418 ORTHO05D008063 4.1e-150 535.0 333 78.1
Lj3g0006580 Lotus japonicus HOM05D006418 ORTHO05D008063 9.0e-150 533.9 296 84.5
arahy.Tifrunner.gnm1.ann1.K1NG1D Arachis hypogaea HOM05D006418 ORTHO05D008063 1.2e-149 533.5 336 76.5
Lalb_Chr10g0097531 Lupinus albus HOM05D006418 ORTHO05D008063 2.0e-149 532.7 336 76.5
Ciclev10021113m.g Citrus clementina HOM05D006418 ORTHO05D008063 2.6e-149 532.3 336 75.0
Glyma.03G017600 Glycine max HOM05D006418 ORTHO05D008063 3.4e-149 531.9 336 76.5
Actinidia38288 Actinidia chinensis HOM05D006418 ORTHO05D008063 5.9e-149 531.2 304 81.6
CSS0035566 Camellia sinensis var. sinensis HOM05D006418 ORTHO05D008063 5.9e-149 531.2 328 76.2
COL.COLO4_12625 Corchorus olitorius HOM05D006418 ORTHO05D008063 5.9e-149 531.2 335 74.6
Dinv32422 Davidia involucrata HOM05D006418 ORTHO05D008063 5.9e-149 531.2 295 84.4
Sabra02G0121400 Salix brachista HOM05D006418 ORTHO05D008063 1.0e-148 530.4 319 79.6
Peaxi162Scf00021g00525 Petunia axillaris HOM05D006418 ORTHO05D008063 1.3e-148 530.0 307 81.1
Lj7A519G38 Lonicera japonica HOM05D006418 ORTHO05D008063 2.2e-148 529.3 300 82.7
ECA236G1148 Erigeron canadensis HOM05D006418 ORTHO05D008063 5.0e-148 528.1 300 82.7
TPR.G17586 Trifolium pratense HOM05D006418 ORTHO05D008063 5.0e-148 528.1 337 76.3
Aqoxy5G03975 Aquilegia oxysepala HOM05D006418 ORTHO05D008063 1.1e-147 526.9 302 79.5
Eucgr.E00217 Eucalyptus grandis HOM05D006418 ORTHO05D008063 1.1e-147 526.9 332 74.7
TWI59G1449 Tripterygium wilfordii HOM05D006418 ORTHO05D008063 1.1e-147 526.9 332 76.8
SalBow3G2367 Salvia bowleyana HOM05D006418 ORTHO05D008063 2.5e-147 525.8 338 76.0
Nitab4.5_0004550g0130 Nicotiana tabacum HOM05D006418 ORTHO05D008063 7.2e-147 524.2 349 74.5
VMungo0331G0376 Vigna mungo HOM05D006418 ORTHO05D008063 7.9e-146 520.8 329 76.3
CiPaw.01G023800 Carya illinoinensis HOM05D006418 ORTHO05D008063 1.0e-145 520.4 337 75.7
Ca_23755_v3 Cicer arietinum L. HOM05D006418 ORTHO05D008063 1.4e-145 520.0 304 80.3
Cfa004182 Carpinus fangiana HOM05D006418 ORTHO05D008063 2.3e-145 519.2 295 82.7
Hund27325 Selenicereus undatus HOM05D006418 ORTHO05D008063 3.9e-145 518.5 321 75.7
THA.LOC104827683 Tarenaya hassleriana HOM05D006418 ORTHO05D008063 6.7e-145 517.7 336 73.5
Os03g0117800 Oryza sativa ssp. japonica HOM05D006418 ORTHO05D008063 2.0e-144 516.2 298 80.5
Thhalv10006098m.g Eutrema salsugineum HOM05D006418 ORTHO05D008063 7.4e-144 514.2 299 80.9
Aa31LG10G15180 Aethionema arabicum HOM05D006418 ORTHO05D008063 1.7e-143 513.1 298 80.2
PSO063G7157 Papaver somniferum HOM05D006418 ORTHO05D008063 1.7e-143 513.1 338 72.8
EL10Ac1g00963 Beta vulgaris HOM05D006418 ORTHO05D008063 2.2e-143 512.7 319 75.9
Medtr8g032700 Medicago truncatula HOM05D006418 ORTHO05D008063 2.2e-143 512.7 304 80.3
Phvul.010G092700 Phaseolus vulgaris HOM05D006418 ORTHO05D008063 3.7e-143 511.9 318 76.7
AT3G61080 Arabidopsis thaliana HOM05D006418 ORTHO05D008063 6.3e-143 511.1 302 79.1
Sp5g02280 Schrenkiella parvula HOM05D006418 ORTHO05D008063 6.3e-143 511.1 328 75.3
DCAR_025170 Daucus carota HOM05D006418 ORTHO05D008063 3.1e-142 508.8 310 77.7
AL5G43290 Arabidopsis lyrata HOM05D006418 ORTHO05D008063 5.3e-142 508.1 330 74.5
CARHR171390 Cardamine hirsuta HOM05D006418 ORTHO05D008063 5.3e-142 508.1 328 74.7
ClCG05G001910 Citrullus lanatus HOM05D006418 ORTHO05D008063 5.3e-142 508.1 317 74.8
Zm00001eb001200 Zea mays HOM05D006418 ORTHO05D008063 2.6e-141 505.8 295 79.3
BcaB02g07390 Brassica carinata HOM05D006418 ORTHO05D008063 3.4e-141 505.4 302 79.5
BcaC08g45098 Brassica carinata HOM05D006418 ORTHO05D008063 4.5e-141 505.0 302 79.1
Carub.0005s2773 Capsella rubella HOM05D006418 ORTHO05D008063 5.9e-141 504.6 299 79.3
PGR042G1311 Punica granatum HOM05D006418 ORTHO05D008063 5.9e-141 504.6 316 75.9
C06p27060 Brassica napus HOM05D006418 ORTHO05D008063 5.5e-139 498.0 309 77.3
BolC6t37878H Brassica oleracea HOM05D006418 ORTHO05D008063 5.5e-139 498.0 309 77.3
ATR0757G200 Amborella trichopoda HOM05D006418 ORTHO05D008063 7.2e-139 497.7 327 72.8
A07p25300 Brassica napus HOM05D006418 ORTHO05D008063 2.7e-138 495.7 309 77.0
HPP92_014577 Vanilla planifolia HOM05D006418 ORTHO05D008063 2.7e-138 495.7 313 74.8
BraA07t30173Z Brassica rapa HOM05D006418 ORTHO05D008063 3.9e-137 491.9 309 76.1
SGA_v2.0_scaffold95G28870 Striga asiatica HOM05D006418 ORTHO05D008063 1.7e-135 486.5 352 71.9
MELO3C006151.2 Cucumis melo HOM05D006418 ORTHO05D008063 7.0e-134 481.1 374 65.0
Manes.01G262400 Manihot esculenta HOM05D006418 ORTHO05D008063 7.2e-131 471.1 288 79.2
Oeu024416.1 Olea europaea HOM05D006418 ORTHO05D008063 2.2e-124 449.5 295 75.6
Thecc.01G368600 Theobroma cacao HOM05D006418 ORTHO05D008063 6.5e-124 448.0 291 73.9
Atru.chr5.403 Acer truncatum HOM05D006418 ORTHO05D008063 5.5e-123 444.9 281 75.1
Prupe.2G154600 Prunus persica HOM05D006418 ORTHO05D008063 2.7e-122 442.6 241 84.6
CDE01G0065 Ceratophyllum demersum HOM05D006418 ORTHO05D008063 1.4e-121 440.3 268 75.4
Psat4g151800 Pisum sativum HOM05D006418 ORTHO05D008063 2.0e-120 436.4 279 73.1
CsaV3_3G009310 Cucumis sativus L. HOM05D006418 ORTHO05D008063 6.3e-119 431.4 241 82.6
Lsat_1_v5_gn_7_8501 Lactuca sativa HOM05D006418 ORTHO05D008063 8.3e-119 431.0 327 65.4
Mapoly0138s0005 Marchantia polymorpha HOM05D006418 ORTHO05D008063 7.0e-118 427.9 292 68.8
AUR62004291 Chenopodium quinoa HOM05D006418 ORTHO05D008063 1.6e-117 426.8 252 77.4
Sed0024588 Sechium edule HOM05D006418 ORTHO05D008063 1.1e-115 420.6 241 80.9
CBR_g38943 Chara braunii HOM05D006418 ORTHO05D008063 2.1e-114 416.4 293 66.2
AagrBONN_evm.TU.Sc2ySwM_344.2134 Anthoceros agrestis HOM05D006418 ORTHO05D008063 8.8e-113 411.0 301 64.1
QL08p050652 Quercus lobata HOM05D006418 ORTHO05D008063 4.4e-112 408.7 263 75.3
Pp3c15_5030 Physcomitrium patens HOM05D006418 ORTHO05D008063 9.8e-112 407.5 332 60.5
SMO356G0133 Selaginella moellendorffii HOM05D006418 ORTHO05D008063 1.0e-108 397.5 291 64.6
unitig_22.g5367 Utricularia gibba HOM05D006418 ORTHO05D008063 4.7e-106 388.7 204 88.2
Cpa.g.sc18.197 Carica papaya HOM05D006418 ORTHO05D008063 6.8e-105 384.8 255 72.9
Cc02_g37660 Coffea canephora HOM05D006418 ORTHO05D008063 2.0e-96 356.7 208 79.8
Gohir.A11G085000 Gossypium hirsutum HOM05D006418 ORTHO05D008063 2.5e-91 339.7 182 84.1
Hma1.2p1_0033F.1_g020640 Hydrangea macrophylla HOM05D006418 ORTHO05D008063 5.2e-89 332.0 255 65.5
MBI12_g25033_MAGBIO Magnolia biondii HOM05D006418 ORTHO05D008063 1.2e-88 330.9 260 63.5
SEGI_14549 Sequoiadendron giganteum HOM05D006418 ORTHO05D008063 1.4e-70 270.8 170 74.1
MCO14G366 Micromonas commoda HOM05D006418 ORTHO05D008063 4.3e-67 259.2 298 48.0
Cre12.g542202 Chlamydomonas reinhardtii HOM05D006418 ORTHO05D008063 9.6e-67 258.1 251 51.0
Sc26g0001060 Simmondsia chinensis HOM05D001335 ORTHO05D001184 9.3e-62 241.5 178 67.4
FAN10G0301 Fragaria x ananassa HOM05D006418 ORTHO05D008063 6.6e-60 235.3 215 59.1
arahy.Tifrunner.gnm1.ann1.N7AMXP Arachis hypogaea HOM05D006418 ORTHO05D008063 1.9e-59 233.8 174 69.0
Haze_15226 Corylus avellana HOM05D006418 ORTHO05D008063 5.3e-57 225.7 138 78.3
PRCOL_00000121 Prasinoderma coloniale HOM05D006418 ORTHO05D008063 2.4e-54 216.9 269 45.0
Gohir.A11G084900 Gossypium hirsutum HOM05D006418 ORTHO05D008063 4.6e-45 186.0 136 67.6
Pp3c1_6480 Physcomitrium patens HOM05D006418 ORTHO05D008063 3.3e-43 179.9 277 37.9
Glyma.07G078900 Glycine max HOM05D006418 ORTHO05D008063 1.3e-42 177.9 187 55.6
Sabra14G0055300 Salix brachista HOM05D006418 ORTHO05D008063 1.4e-41 174.5 289 39.1
Sc26g0001070 Simmondsia chinensis HOM05D006418 ORTHO05D008063 3.4e-40 169.9 137 65.0
Ca_28970_v3 Cicer arietinum L. HOM05D006418 ORTHO05D008063 1.1e-33 148.3 289 34.6
Cfa024407 Carpinus fangiana HOM05D006418 ORTHO05D008063 2.1e-29 134.0 277 33.2
ATR0620G127 Amborella trichopoda HOM05D006418 ORTHO05D008063 9.7e-27 125.2 157 43.3
unitig_22.g5366 Utricularia gibba HOM05D003447 ORTHO05D003967 8.2e-26 122.1 99 62.6
Cc00_g22860 Coffea canephora HOM05D006418 ORTHO05D008063 4.8e-18 96.3 57 80.7
CiPaw.01G052800 Carya illinoinensis HOM05D006418 ORTHO05D008063 1.0e-15 88.6 89 52.8
SEGI_36912 Sequoiadendron giganteum HOM05D006418 ORTHO05D008063 5.7e-11 72.8 54 63.0
MBI16_g15528_MAGBIO Magnolia biondii HOM05D006418 ORTHO05D008063 2.8e-10 70.5 42 78.6
Actinidia27830 Actinidia chinensis HOM05D006418 ORTHO05D008063 2.4e-09 67.4 43 65.1
MBI11_g05318_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 9.4e-06 55.5 30 86.7


User provided reference genes

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