Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B01647 Erythranthe guttata HOM05D004001 ORTHO05D004559 0.0e+00 1461.8 861 100.0
SalBow5G4135 Salvia bowleyana HOM05D004001 ORTHO05D004559 2.2e-261 906.0 930 63.4
MSTRG.20759 Avicennia marina HOM05D004001 ORTHO05D004559 1.8e-258 896.3 974 62.2
SGA_v2.0_scaffold95G28893 Striga asiatica HOM05D004001 ORTHO05D004559 2.8e-235 819.3 913 62.7
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 1.1e-220 770.8 925 55.0
Solyc01g091500.3 Solanum lycopersicum HOM05D004001 ORTHO05D004559 4.3e-220 768.8 946 53.7
Nitab4.5_0010473g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 1.1e-218 764.2 948 54.1
Sopen01g037250 Solanum pennellii HOM05D004001 ORTHO05D004559 3.1e-218 762.7 951 53.5
Actinidia12272 Actinidia chinensis HOM05D004001 ORTHO05D004559 1.3e-216 757.3 936 53.4
PGSC0003DMG400012752 Solanum tuberosum HOM05D004001 ORTHO05D004559 1.4e-215 753.8 958 54.7
Oeu037907.1 Olea europaea HOM05D004001 ORTHO05D004559 2.1e-214 750.0 900 56.2
Cc02_g36540 Coffea canephora HOM05D004001 ORTHO05D004559 3.9e-213 745.7 950 56.3
Actinidia31422 Actinidia chinensis HOM05D004001 ORTHO05D004559 2.4e-210 736.5 889 54.3
Lj9C572T3 Lonicera japonica HOM05D004001 ORTHO05D004559 2.4e-207 726.5 902 58.6
Nitab4.5_0004320g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 3.2e-207 726.1 967 51.5
CAN.G170.4 Capsicum annuum HOM05D004001 ORTHO05D004559 7.3e-204 714.9 947 51.4
unitig_8.g3817 Utricularia gibba HOM05D004001 ORTHO05D004559 5.3e-202 708.8 873 53.6
TAR629G2254 Trochodendron aralioides HOM05D004001 ORTHO05D004559 2.0e-201 706.8 934 51.9
Rhsim07G0025900 Rhododendron simsii HOM05D004001 ORTHO05D004559 5.6e-196 688.7 808 54.7
QL08p051978 Quercus lobata HOM05D004001 ORTHO05D004559 7.3e-196 688.3 906 53.6
SGA_v2.0_scaffold153G37027 Striga asiatica HOM05D004001 ORTHO05D001724 7.3e-196 688.3 881 55.1
Rhsim07G0026000 Rhododendron simsii HOM05D004001 ORTHO05D004559 6.9e-194 681.8 831 53.1
HanXRQChr03g0093811 Helianthus annuus HOM05D004001 ORTHO05D004559 9.3e-191 671.4 862 56.1
MD02G1201400 Malus domestica HOM05D004001 ORTHO05D004559 7.9e-190 668.3 844 56.8
Thecc.01G374400 Theobroma cacao HOM05D004001 ORTHO05D004559 1.8e-189 667.2 921 49.3
Glyma.18G221900 Glycine max HOM05D004001 ORTHO05D004559 3.9e-189 666.0 852 56.5
Atru.chr5.325 Acer truncatum HOM05D004001 ORTHO05D004559 8.7e-189 664.8 860 50.7
Haze_16831 Corylus avellana HOM05D004001 ORTHO05D004559 1.3e-187 661.0 920 51.5
Eucgr.E01409 Eucalyptus grandis HOM05D004001 ORTHO05D004559 2.1e-187 660.2 885 52.2
arahy.Tifrunner.gnm1.ann1.2UV9R4 Arachis hypogaea HOM05D004001 ORTHO05D004559 9.0e-186 654.8 900 52.6
CANSAT56G0321 Cannabis sativa HOM05D004001 ORTHO05D004559 3.8e-184 649.4 862 50.6
Lj7C526G13 Lonicera japonica HOM05D004001 ORTHO05D004559 2.5e-183 646.7 883 50.2
TAR636G3381 Trochodendron aralioides HOM05D004001 ORTHO05D004559 2.5e-183 646.7 937 49.8
arahy.Tifrunner.gnm1.ann1.0Y1PWL Arachis hypogaea HOM05D004001 ORTHO05D004559 1.2e-182 644.4 908 47.8
FAN03G0266 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.6e-182 644.0 845 54.1
arahy.Tifrunner.gnm1.ann1.CI1NNE Arachis hypogaea HOM05D004001 ORTHO05D004559 2.7e-182 643.3 919 51.9
RcHm_v2.0_Chr1g0350831 Rosa chinensis HOM05D004001 ORTHO05D004559 2.7e-182 643.3 873 53.3
Lalb_Chr07g0189651 Lupinus albus HOM05D004001 ORTHO05D004559 3.5e-182 642.9 869 52.7
arahy.Tifrunner.gnm1.ann1.H5PXMS Arachis hypogaea HOM05D004001 ORTHO05D004559 1.8e-181 640.6 895 52.5
CiPaw.01G260600 Carya illinoinensis HOM05D004001 ORTHO05D004559 3.9e-181 639.4 872 49.8
Sc26g0001190 Simmondsia chinensis HOM05D004001 ORTHO05D004559 3.9e-181 639.4 868 51.8
Lalb_Chr12g0208391 Lupinus albus HOM05D004001 ORTHO05D004559 7.4e-180 635.2 883 54.6
Lalb_Chr12g0208441 Lupinus albus HOM05D004001 ORTHO05D004559 7.4e-180 635.2 883 54.6
Gorai.007G092200 Gossypium raimondii HOM05D004001 ORTHO05D004559 4.8e-179 632.5 923 48.4
FAN06G2206 Fragaria x ananassa HOM05D004001 ORTHO05D004559 9.0e-178 628.2 872 48.5
FAN10G1409 Fragaria x ananassa HOM05D004001 ORTHO05D004559 3.4e-177 626.3 870 48.0
Duzib138G1007 Durio zibethinus HOM05D004001 ORTHO05D004559 4.5e-177 625.9 900 48.7
Potri.014G071400 Populus trichocarpa HOM05D004001 ORTHO05D004559 4.5e-177 625.9 920 47.5
Cfa001702 Carpinus fangiana HOM05D004001 ORTHO05D004559 7.6e-177 625.2 921 50.6
FvH4_7g12090 Fragaria vesca HOM05D004001 ORTHO05D004559 1.7e-176 624.0 870 48.0
COL.COLO4_12572 Corchorus olitorius HOM05D004001 ORTHO05D004559 6.5e-176 622.1 845 54.3
FAN06G4715 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.4e-175 620.9 870 47.7
FAN10G1690 Fragaria x ananassa HOM05D004001 ORTHO05D004559 7.1e-175 618.6 847 48.5
CsaV3_3G009550 Cucumis sativus L. HOM05D004001 ORTHO05D004559 9.3e-175 618.2 886 47.6
Aqoxy7G00586 Aquilegia oxysepala HOM05D004001 ORTHO05D004559 1.2e-174 617.8 922 49.3
Lj1g0027935 Lotus japonicus HOM05D004001 ORTHO05D004559 2.7e-174 616.7 913 50.6
ECA240G2591 Erigeron canadensis HOM05D004001 ORTHO05D004559 1.6e-171 607.4 887 52.8
Peaxi162Scf00021g01316 Petunia axillaris HOM05D004001 ORTHO05D004559 2.2e-171 607.1 936 47.2
Lsat_1_v5_gn_3_133301 Lactuca sativa HOM05D004001 ORTHO05D004559 3.7e-171 606.3 868 53.1
Manes.05G044000 Manihot esculenta HOM05D004001 ORTHO05D004559 1.4e-170 604.4 849 48.8
GSVIVG01027630001 Vitis vinifera HOM05D004001 ORTHO05D004559 1.4e-170 604.4 872 48.4
Gohir.D11G086300 Gossypium hirsutum HOM05D004001 ORTHO05D004559 2.4e-170 603.6 923 47.1
Ca_07831_v3 Cicer arietinum L. HOM05D004001 ORTHO05D004559 9.0e-170 601.7 884 50.9
Gohir.D12G105400 Gossypium hirsutum HOM05D004001 ORTHO05D004559 4.5e-169 599.4 880 52.6
arahy.Tifrunner.gnm1.ann1.EYC1DY Arachis hypogaea HOM05D004001 ORTHO05D004559 7.7e-169 598.6 922 50.0
arahy.Tifrunner.gnm1.ann1.9J1L2I Arachis hypogaea HOM05D004001 ORTHO05D004559 2.9e-168 596.7 923 50.1
TWI14G1161 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 6.5e-168 595.5 932 45.5
PSO478G3708 Papaver somniferum HOM05D004001 ORTHO05D004559 4.6e-166 589.3 911 46.0
PSO782G3046 Papaver somniferum HOM05D004001 ORTHO05D004559 2.3e-165 587.0 907 47.9
Medtr7g075140 Medicago truncatula HOM05D004001 ORTHO05D004559 1.5e-164 584.3 898 50.2
AUR62013619 Chenopodium quinoa HOM05D004001 ORTHO05D004559 1.8e-162 577.4 861 46.6
Sabra14G0050700 Salix brachista HOM05D004001 ORTHO05D004559 1.5e-161 574.3 915 45.7
Psat3g115320 Pisum sativum HOM05D004001 ORTHO05D004559 2.0e-161 573.9 911 48.4
Prupe.2G147400 Prunus persica HOM05D004001 ORTHO05D004559 4.5e-161 572.8 786 55.0
Gorai.008G114700 Gossypium raimondii HOM05D004001 ORTHO05D004559 2.2e-160 570.5 880 46.4
Nn4g26437 Nelumbo nucifera HOM05D004001 ORTHO05D004559 1.2e-158 564.7 935 44.1
BcaB02g08998 Brassica carinata HOM05D004001 ORTHO05D004559 7.9e-158 562.0 872 48.7
EL10Ac1g00911 Beta vulgaris HOM05D004001 ORTHO05D004559 2.3e-157 560.5 903 45.4
vmacro13388 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 2.3e-157 560.5 756 51.1
ClCG05G002120 Citrullus lanatus HOM05D004001 ORTHO05D004559 3.3e-156 556.6 1049 42.8
Phvul.008G075200 Phaseolus vulgaris HOM05D004001 ORTHO05D004559 5.7e-156 555.8 853 49.4
PGR042G2753 Punica granatum HOM05D004001 ORTHO05D004559 7.4e-156 555.4 877 49.0
CSS0038978 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 7.0e-154 548.9 464 66.8
AUR62004229 Chenopodium quinoa HOM05D004001 ORTHO05D004559 1.5e-153 547.7 905 44.0
Ciclev10018784m.g Citrus clementina HOM05D004001 ORTHO05D004559 3.5e-153 546.6 913 44.0
Sp4g27490 Schrenkiella parvula HOM05D004001 ORTHO05D004559 1.9e-151 540.8 802 49.6
Glyma.09G268000 Glycine max HOM05D004001 ORTHO05D004559 4.0e-149 533.1 900 43.8
AL4G44630 Arabidopsis lyrata HOM05D004001 ORTHO05D004559 8.8e-149 531.9 918 44.7
Aa31LG1G26960 Aethionema arabicum HOM05D004001 ORTHO05D004559 2.0e-148 530.8 839 48.0
Hund17008 Selenicereus undatus HOM05D004001 ORTHO05D004559 9.7e-148 528.5 1003 41.1
AT2G45460 Arabidopsis thaliana HOM05D004001 ORTHO05D004559 7.7e-145 518.8 916 44.5
CARHR140650 Cardamine hirsuta HOM05D004001 ORTHO05D004559 1.0e-144 518.5 889 45.4
arahy.Tifrunner.gnm1.ann1.JKPH3R Arachis hypogaea HOM05D004001 ORTHO05D004559 2.5e-143 513.8 826 45.3
MELO3C006177.2 Cucumis melo HOM05D004001 ORTHO05D004559 1.8e-141 507.7 883 47.2
A05p05490 Brassica napus HOM05D004001 ORTHO05D004559 4.0e-141 506.5 867 46.5
BcaC02g12205 Brassica carinata HOM05D004001 ORTHO05D004559 6.8e-141 505.8 862 46.2
C04p06430 Brassica napus HOM05D004001 ORTHO05D004559 8.8e-141 505.4 862 46.2
BolC4t22266H Brassica oleracea HOM05D004001 ORTHO05D004559 8.8e-141 505.4 877 45.0
CDE04G0282 Ceratophyllum demersum HOM05D004001 ORTHO05D004559 3.4e-140 503.4 880 42.3
BraA05t19519Z Brassica rapa HOM05D004001 ORTHO05D004559 1.4e-138 498.0 880 44.5
Carub.0004s2807 Capsella rubella HOM05D004001 ORTHO05D004559 8.8e-133 478.8 904 43.0
Thhalv10001303m.g Eutrema salsugineum HOM05D004001 ORTHO05D004559 7.5e-132 475.7 893 43.8
MBI11_g23939_MAGBIO Magnolia biondii HOM05D004001 ORTHO05D004559 2.2e-131 474.2 750 52.5
Gohir.A12G102200 Gossypium hirsutum HOM05D004001 ORTHO05D004559 4.1e-130 469.9 912 41.9
Sed0014964 Sechium edule HOM05D004001 ORTHO05D004559 1.6e-126 458.0 782 45.0
Os03g0127600 Oryza sativa ssp. japonica HOM05D004001 ORTHO05D004559 1.4e-122 444.9 911 39.1
Ah.16g103740 Amaranthus hybridus HOM05D004001 ORTHO05D004559 1.2e-121 441.8 844 43.5
unitig_31.g34038 Utricularia gibba HOM05D004001 ORTHO05D004559 1.3e-120 438.3 604 49.0
Gohir.A11G081700 Gossypium hirsutum HOM05D004001 ORTHO05D004559 5.6e-119 433.0 929 42.9
ATR0757G164 Amborella trichopoda HOM05D004001 ORTHO05D004559 6.2e-118 429.5 912 42.2
Zm00001eb403560 Zea mays HOM05D004001 ORTHO05D004559 8.0e-118 429.1 853 39.5
SHI13515 Sapria himalayana HOM05D004001 ORTHO05D004559 5.4e-114 416.4 535 48.6
TPR.G26922 Trifolium pratense HOM05D004001 ORTHO05D004559 1.6e-110 404.8 828 38.3
Zm00001eb002020 Zea mays HOM05D004001 ORTHO05D004559 1.1e-103 382.1 840 40.6
SEGI_05063 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 2.8e-102 377.5 546 50.5
DCAR_006877 Daucus carota HOM05D004001 ORTHO05D004559 2.8e-94 350.9 463 48.4
SalBow3G1117 Salvia bowleyana HOM05D004001 ORTHO05D004559 2.9e-91 340.9 237 75.9
HPP92_018394 Vanilla planifolia HOM05D004001 ORTHO05D004559 2.1e-86 324.7 621 45.7
AagrBONN_evm.TU.Sc2ySwM_362.1643 Anthoceros agrestis HOM05D004001 ORTHO05D004559 2.4e-85 321.2 537 47.5
arahy.Tifrunner.gnm1.ann1.5M5P73 Arachis hypogaea HOM05D004001 ORTHO05D004559 2.9e-67 261.2 390 44.1
Oeu005774.1 Olea europaea HOM05D004001 ORTHO05D004559 4.2e-66 257.3 214 72.4
arahy.Tifrunner.gnm1.ann1.RB3Z54 Arachis hypogaea HOM05D004001 ORTHO05D004559 2.7e-65 254.6 402 44.3
Mapoly0005s0201 Marchantia polymorpha HOM05D004001 ORTHO05D004559 3.7e-62 244.2 638 39.8
Actinidia33460 Actinidia chinensis HOM05D004001 ORTHO05D004559 1.8e-53 215.3 184 63.6
DCAR_006876 Daucus carota HOM05D004001 ORTHO05D004559 1.0e-51 209.5 409 44.3
vmacro13387 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 1.1e-50 206.1 183 60.7
Pp3c5_28010 Physcomitrium patens HOM05D004001 ORTHO05D004559 2.5e-50 204.9 399 34.1
VMungo1383G1498 Vigna mungo HOM05D004001 ORTHO05D004559 2.3e-40 171.8 389 40.9
VMungo1383G3044 Vigna mungo HOM05D004001 ORTHO05D004559 2.3e-40 171.8 139 59.7
CSS0022656 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 3.0e-40 171.4 422 40.0
CBR_g40168 Chara braunii HOM05D004001 ORTHO05D004559 2.0e-31 142.1 618 29.3
SEGI_21780 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 1.3e-30 139.4 627 31.1
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 8.2e-30 136.7 153 55.6
Hma1.2p1_1793F.1_g302640 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 8.2e-30 136.7 153 52.9
Mapoly0048s0074 Marchantia polymorpha HOM05D004001 ORTHO05D004559 2.0e-28 132.1 235 38.3
Hma1.2p1_1793F.1_g302630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 1.0e-27 129.8 97 66.0
Hma1.2p1_3528F.1_g336625 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 1.0e-27 129.8 97 66.0
arahy.Tifrunner.gnm1.ann1.K6PBMX Arachis hypogaea HOM05D004001 ORTHO05D004559 8.0e-25 120.2 157 47.8
Cpa.g.sc18.133 Carica papaya HOM05D004001 ORTHO05D004559 2.8e-22 111.7 296 40.5
arahy.Tifrunner.gnm1.ann1.LXQN6Z Arachis hypogaea HOM05D004001 ORTHO05D004559 7.0e-21 107.1 232 37.5
arahy.Tifrunner.gnm1.ann1.7YWS89 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.0e-19 103.2 304 41.8
arahy.Tifrunner.gnm1.ann1.DK59KL Arachis hypogaea HOM05D004001 ORTHO05D004559 6.8e-16 90.5 141 41.1
arahy.Tifrunner.gnm1.ann1.2V3ERI Arachis hypogaea HOM05D004001 ORTHO05D004559 1.3e-14 86.3 259 48.3
arahy.Tifrunner.gnm1.ann1.63QVJR Arachis hypogaea HOM05D004001 ORTHO05D004559 1.3e-14 86.3 241 49.8
SMO147G0240 Selaginella moellendorffii HOM05D004001 ORTHO05D004559 5.4e-13 80.9 279 28.0
Oeu005773.1 Olea europaea HOM05D004001 ORTHO05D004559 2.7e-12 78.6 107 47.7
Rhsim07G0026800 Rhododendron simsii HOM05D004001 ORTHO05D004559 2.7e-12 78.6 255 34.5
TWI56G1146 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 4.5e-12 77.8 138 37.7
EL10Ac2g04735 Beta vulgaris HOM05D002948 ORTHO05D003577 5.9e-12 77.4 114 45.6
TWI56G0921 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 5.9e-12 77.4 132 38.6
TWI56G1317 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 5.9e-12 77.4 132 38.6
TWI56G0444 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 7.7e-12 77.0 149 34.2
TWI56G0254 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.0e-11 76.6 121 41.3
TWI56G1263 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.0e-11 76.6 121 41.3
vmacro22718 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 9.5e-10 70.1 58 67.2
arahy.Tifrunner.gnm1.ann1.YQ72RL Arachis hypogaea HOM05D004001 ORTHO05D004559 2.1e-09 68.9 161 35.4
Dinv00152 Davidia involucrata HOM05D026811 ORTHO05D004559 2.8e-09 68.6 56 62.5
Dinv00153 Davidia involucrata HOM05D004001 ORTHO05D004559 2.8e-09 68.6 56 62.5
unitig_11.g32402 Utricularia gibba HOM05D052051 ORTHO05D004559 8.0e-09 67.0 46 71.7
unitig_8.g3821 Utricularia gibba HOM05D052051 ORTHO05D004559 8.0e-09 67.0 46 71.7
unitig_31.g34039 Utricularia gibba HOM05D004001 ORTHO05D004559 2.3e-08 65.5 70 55.7
Dinv00151 Davidia involucrata HOM05D026811 ORTHO05D004559 1.2e-07 63.2 75 48.0
arahy.Tifrunner.gnm1.ann1.8X1DD2 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.5e-07 62.8 91 46.2
Hma1.2p1_3528F.1_g336630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 5.7e-07 60.8 110 41.8
arahy.Tifrunner.gnm1.ann1.FJEF2G Arachis hypogaea HOM05D004001 ORTHO05D004559 8.3e-06 57.0 175 32.6
arahy.Tifrunner.gnm1.ann1.Y88425 Arachis hypogaea HOM05D004001 ORTHO05D004559 8.3e-06 57.0 50 54.0


User provided reference genes

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