Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 6.1e-141 504.2 266 100.0
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 3.7e-114 415.2 266 81.6
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 2.9e-111 405.6 266 80.1
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 4.0e-100 368.6 265 70.9
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 9.8e-99 364.0 265 69.8
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 8.3e-98 360.9 265 72.1
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 5.4e-97 358.2 265 68.3
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 1.6e-96 356.7 267 69.7
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 2.3e-95 352.8 268 68.7
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 8.6e-95 350.9 257 69.3
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 8.6e-95 350.9 265 67.5
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 3.3e-94 349.0 270 68.9
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 3.3e-94 349.0 265 67.2
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 7.3e-94 347.8 273 68.5
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 4.7e-93 345.1 263 68.8
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 1.4e-92 343.6 268 68.3
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 1.8e-92 343.2 263 69.6
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 3.1e-92 342.4 269 65.4
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 8.9e-92 340.9 268 66.0
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 8.9e-92 340.9 270 66.7
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 1.2e-91 340.5 272 67.6
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 2.0e-91 339.7 270 67.4
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 3.4e-91 339.0 269 66.9
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 7.5e-91 337.8 271 66.8
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 9.8e-91 337.4 268 66.8
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 1.3e-90 337.0 268 66.0
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 2.2e-90 336.3 275 65.1
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 2.9e-90 335.9 267 66.3
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 4.9e-90 335.1 267 65.9
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 4.9e-90 335.1 267 66.7
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 4.9e-90 335.1 271 65.7
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 6.4e-90 334.7 271 66.8
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 8.3e-90 334.3 271 66.8
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 8.3e-90 334.3 269 67.7
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 1.1e-89 334.0 271 66.8
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 1.1e-89 334.0 269 65.4
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 1.4e-89 333.6 267 65.2
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 1.9e-89 333.2 269 65.8
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 2.4e-89 332.8 273 66.7
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 4.1e-89 332.0 271 65.7
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 7.0e-89 331.3 267 65.9
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 7.0e-89 331.3 269 65.8
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 9.2e-89 330.9 271 65.3
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 1.2e-88 330.5 271 65.3
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 1.2e-88 330.5 268 64.9
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 1.6e-88 330.1 271 65.3
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 1.6e-88 330.1 266 65.0
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 1.6e-88 330.1 269 65.8
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 2.7e-88 329.3 265 64.2
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 2.7e-88 329.3 268 63.8
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 3.5e-88 328.9 271 64.9
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 3.5e-88 328.9 262 65.6
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 4.6e-88 328.6 267 67.8
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 6.0e-88 328.2 269 65.4
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 7.8e-88 327.8 268 66.4
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 1.7e-87 326.6 268 64.9
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 3.0e-87 325.9 267 64.0
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 1.5e-86 323.6 277 63.9
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 6.2e-85 318.2 266 63.5
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 1.4e-84 317.0 265 62.3
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 2.3e-84 316.2 256 64.8
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 4.0e-84 315.5 258 63.2
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 6.8e-84 314.7 263 65.0
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 8.9e-84 314.3 270 63.7
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 2.0e-83 313.2 301 57.8
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 3.4e-83 312.4 264 64.0
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 3.4e-83 312.4 270 62.6
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 4.4e-83 312.0 270 62.6
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 9.9e-83 310.8 271 60.9
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 1.3e-82 310.5 269 62.5
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.3e-82 310.5 284 58.1
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.9e-82 309.3 274 59.9
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.9e-82 309.3 274 60.2
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 2.9e-82 309.3 265 62.3
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 6.4e-82 308.1 269 63.6
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.1e-81 307.4 274 59.1
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 1.1e-81 307.4 273 58.6
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 1.4e-81 307.0 269 61.3
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 1.4e-81 307.0 271 62.4
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 1.9e-81 306.6 269 61.7
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 9.2e-81 304.3 336 53.9
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.5e-80 302.4 274 58.8
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 7.8e-80 301.2 265 60.4
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 6.6e-79 298.1 266 62.4
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 7.3e-78 294.7 246 63.8
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.6e-77 293.5 283 56.9
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 1.4e-73 280.4 217 69.1
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 1.4e-73 280.4 245 59.6
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 1.0e-71 274.2 265 55.5
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 1.5e-67 260.4 273 51.6
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 1.1e-65 254.2 242 57.9
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 2.1e-64 250.0 254 56.7
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 3.9e-63 245.7 269 49.8
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 5.1e-63 245.4 285 50.2
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 1.9e-62 243.4 265 51.7
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 7.3e-62 241.5 245 58.4
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 4.9e-58 228.8 190 64.2
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 1.1e-57 227.6 179 67.6
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 3.5e-56 222.6 145 74.5
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 1.8e-52 210.3 259 44.8
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 4.2e-49 199.1 267 42.3
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 7.9e-48 194.9 256 43.4
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 1.9e-46 190.3 192 52.6
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 1.6e-45 187.2 196 56.6
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 4.5e-43 179.1 232 43.5
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 1.1e-41 174.5 341 37.8
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 5.7e-38 162.2 137 64.2
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 1.8e-36 157.1 130 60.0
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 2.9e-34 149.8 106 71.7
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.2e-32 144.4 113 67.3
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.6e-32 144.1 113 66.4
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 1.7e-29 134.0 133 54.9
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 5.0e-26 122.5 112 59.8
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 1.1e-25 121.3 108 62.0
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 1.4e-25 120.9 113 55.8
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 9.4e-25 118.2 84 67.9
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 9.4e-25 118.2 87 66.7
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 4.7e-24 115.9 278 31.3
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 6.1e-24 115.5 235 30.6
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 1.0e-23 114.8 96 63.5
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 2.3e-23 113.6 112 59.8
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 8.8e-23 111.7 74 74.3
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 2.4e-20 103.6 101 55.4
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 1.5e-19 100.9 127 47.2
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 7.7e-19 98.6 116 50.9
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 7.7e-19 98.6 74 66.2
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 5.0e-18 95.9 56 75.0
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 4.2e-17 92.8 68 67.6
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 4.2e-17 92.8 54 83.3
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 9.4e-17 91.7 103 53.4
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 9.4e-17 91.7 80 61.2
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 9.4e-17 91.7 69 60.9
SGA_v2.0_scaffold123G33454 Striga asiatica HOM05D000451 ORTHO05D000351 1.7e-10 70.9 98 45.9
Glyma.03G031532 Glycine max HOM05D005802 ORTHO05D006992 1.9e-09 67.4 89 46.1
Aa31sc27G90 Aethionema arabicum HOM05D005802 ORTHO05D006992 5.2e-07 59.3 139 35.3
arahy.Tifrunner.gnm1.ann1.LXE9FZ Arachis hypogaea HOM05D005802 ORTHO05D006992 4.4e-06 56.2 37 64.9


User provided reference genes

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