Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 2.2e-88 328.9 167 100.0
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 4.7e-75 284.6 163 87.1
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 6.2e-75 284.3 163 87.1
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 2.0e-73 279.3 163 85.3
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 1.9e-71 272.7 163 79.8
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 1.0e-69 266.9 166 78.9
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 1.7e-69 266.2 163 79.1
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 5.1e-69 264.6 164 78.0
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 8.7e-69 263.8 167 76.6
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 3.3e-68 261.9 162 79.6
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 2.1e-67 259.2 164 76.2
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 8.1e-67 257.3 167 77.2
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 8.1e-67 257.3 166 78.3
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 4.0e-66 255.0 166 75.9
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 9.0e-66 253.8 166 73.5
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 1.2e-65 253.4 164 75.6
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 1.2e-65 253.4 166 74.7
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 1.5e-65 253.1 166 73.5
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 1.5e-65 253.1 164 76.8
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 2.6e-65 252.3 163 72.4
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 2.6e-65 252.3 166 73.5
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 2.6e-65 252.3 166 75.3
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 3.4e-65 251.9 164 77.4
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 4.5e-65 251.5 164 77.4
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 4.5e-65 251.5 163 76.1
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 7.6e-65 250.8 164 76.8
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 1.3e-64 250.0 163 73.0
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 1.7e-64 249.6 164 76.2
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 1.7e-64 249.6 164 76.2
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 2.2e-64 249.2 163 73.0
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 2.9e-64 248.8 168 73.2
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 2.9e-64 248.8 166 73.5
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 3.8e-64 248.4 165 73.3
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 6.4e-64 247.7 167 72.5
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 6.4e-64 247.7 166 72.9
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 8.4e-64 247.3 166 73.5
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 8.4e-64 247.3 166 74.7
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 1.9e-63 246.1 166 73.5
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 1.9e-63 246.1 166 73.5
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 1.9e-63 246.1 166 73.5
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 1.9e-63 246.1 164 75.6
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 2.4e-63 245.7 163 75.5
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 2.4e-63 245.7 163 70.6
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 3.2e-63 245.4 160 73.8
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 3.2e-63 245.4 166 72.9
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 3.2e-63 245.4 163 71.2
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 3.2e-63 245.4 192 66.7
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 7.1e-63 244.2 153 80.4
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 9.3e-63 243.8 166 73.5
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 9.3e-63 243.8 166 73.5
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 9.3e-63 243.8 166 73.5
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 9.3e-63 243.8 166 72.3
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 9.3e-63 243.8 166 73.5
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 2.1e-62 242.7 166 73.5
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 2.1e-62 242.7 168 71.4
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 2.7e-62 242.3 166 71.1
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 3.5e-62 241.9 166 73.5
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 3.5e-62 241.9 166 71.7
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 4.6e-62 241.5 167 71.9
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 6.0e-62 241.1 166 71.7
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 7.9e-62 240.7 166 72.9
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 1.0e-61 240.4 164 72.6
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 1.0e-61 240.4 166 72.9
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 5.1e-61 238.0 168 70.2
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 8.7e-61 237.3 168 69.6
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 7.4e-60 234.2 166 70.5
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 2.1e-59 232.6 159 71.7
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 2.8e-59 232.3 154 75.3
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 2.8e-59 232.3 166 68.7
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 2.8e-59 232.3 203 61.6
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 3.7e-59 231.9 163 70.6
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 8.1e-59 230.7 165 68.5
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 7.6e-57 224.2 166 67.5
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.3e-56 223.4 190 62.1
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 2.2e-56 222.6 186 62.9
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 4.9e-56 221.5 149 73.8
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 4.9e-56 221.5 167 65.3
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.4e-55 219.9 166 63.9
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 2.4e-55 219.2 162 67.9
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 1.2e-54 216.9 163 62.0
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 2.3e-53 212.6 137 76.6
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 2.5e-52 209.1 163 63.2
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 2.8e-51 205.7 191 58.1
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 3.1e-50 202.2 138 70.3
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 4.0e-50 201.8 165 61.2
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 9.0e-50 200.7 137 71.5
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 1.2e-49 200.3 165 60.6
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 2.0e-49 199.5 166 60.8
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 2.6e-49 199.1 164 61.0
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 7.6e-49 197.6 139 69.1
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 1.7e-48 196.4 137 67.9
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 4.9e-48 194.9 163 60.1
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 4.9e-48 194.9 174 60.9
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 1.4e-47 193.4 161 57.1
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 1.4e-47 193.4 124 75.8
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 5.5e-47 191.4 118 78.0
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 9.3e-47 190.7 116 80.2
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 1.2e-46 190.3 149 60.4
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 1.2e-46 190.3 149 60.4
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 1.6e-46 189.9 149 59.7
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 1.6e-46 189.9 149 59.7
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 2.1e-46 189.5 157 58.6
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 6.0e-46 188.0 122 75.4
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.8e-45 186.4 167 53.3
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 1.8e-45 186.4 126 68.3
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 1.8e-45 186.4 164 54.9
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 3.0e-45 185.7 136 66.9
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 5.1e-45 184.9 149 59.1
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 5.1e-45 184.9 167 52.7
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 1.1e-44 183.7 149 57.7
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 1.5e-44 183.3 128 69.5
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.3e-43 180.3 167 52.1
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.2e-43 179.5 167 50.9
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 2.8e-43 179.1 126 69.8
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 6.3e-43 177.9 136 61.0
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 1.1e-42 177.2 116 75.0
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 5.3e-42 174.9 116 76.7
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 1.7e-40 169.9 116 71.6
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 6.5e-40 167.9 135 63.0
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 1.9e-36 156.4 163 50.3
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 6.3e-35 151.4 161 50.3
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 5.3e-34 148.3 116 62.1
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.3e-32 143.7 154 50.0
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 1.1e-31 140.6 160 45.6
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 1.1e-31 140.6 88 79.5
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 9.4e-31 137.5 120 55.0
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 2.7e-30 136.0 103 63.1
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 3.0e-29 132.5 92 64.1
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 8.8e-29 131.0 143 46.9
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 2.0e-28 129.8 119 57.1
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 2.6e-28 129.4 125 57.6
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 1.7e-27 126.7 75 78.7
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 1.7e-27 126.7 120 50.8
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.6e-22 110.2 93 53.8
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 4.7e-22 108.6 70 72.9
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 8.0e-22 107.8 89 62.9
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 1.8e-21 106.7 163 41.7
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 3.9e-21 105.5 74 64.9
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 3.9e-21 105.5 74 64.9
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 3.9e-21 105.5 74 64.9
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.3e-19 100.5 159 40.3
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 9.1e-18 94.4 71 62.0
Oeu063212.2 Olea europaea HOM05D004832 ORTHO05D005821 9.1e-18 94.4 163 39.3
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.7e-16 90.1 99 47.5
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 2.9e-16 89.4 52 75.0
Sabra14G0041800 Salix brachista HOM05D004832 ORTHO05D005821 6.1e-14 81.6 69 63.8
Atru.chr5.208 Acer truncatum HOM05D004832 ORTHO05D005821 5.2e-13 78.6 54 72.2
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 4.4e-12 75.5 75 56.0
arahy.Tifrunner.gnm1.ann1.T8JHIW Arachis hypogaea HOM05D004832 ORTHO05D005821 7.5e-12 74.7 160 36.9
Atru.chr5.565 Acer truncatum HOM05D004832 ORTHO05D005821 9.7e-12 74.3 49 73.5
Atru.chr5.584 Acer truncatum HOM05D004832 ORTHO05D005821 9.7e-12 74.3 49 73.5
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 1.3e-11 73.9 59 61.0
vmacro13464 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 3.1e-10 69.3 48 70.8
Nn1g00967 Nelumbo nucifera HOM05D004832 ORTHO05D005821 2.0e-09 66.6 58 55.2


User provided reference genes

Program Settings