Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 3.6e-230 801.2 403 100.0
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 5.2e-168 594.7 401 74.3
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 1.8e-165 586.3 403 73.7
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 1.6e-148 530.0 410 66.8
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 2.7e-148 529.3 397 68.8
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 8.9e-144 514.2 429 63.6
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 9.8e-143 510.8 408 65.9
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 2.4e-141 506.1 403 65.0
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 2.0e-140 503.1 403 65.8
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 5.0e-139 498.4 398 66.1
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 1.9e-138 496.5 406 63.8
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 3.6e-137 492.3 406 62.8
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 3.1e-136 489.2 380 69.7
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 8.9e-136 487.6 399 62.7
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 5.8e-135 485.0 400 64.5
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 1.7e-134 483.4 399 62.4
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 1.4e-133 480.3 397 62.2
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 1.2e-132 477.2 402 62.4
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 4.6e-132 475.3 397 61.7
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 4.6e-132 475.3 401 63.3
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 6.0e-132 474.9 394 62.9
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 1.3e-131 473.8 401 63.3
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 3.0e-131 472.6 403 62.3
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 8.6e-131 471.1 404 62.1
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 8.6e-131 471.1 394 62.9
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 1.9e-130 469.9 400 62.0
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 1.9e-130 469.9 409 61.9
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 3.3e-130 469.2 406 60.3
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 3.3e-130 469.2 402 62.7
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 7.3e-130 468.0 389 61.2
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 7.3e-130 468.0 400 61.2
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 7.3e-130 468.0 400 61.2
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 2.8e-129 466.1 408 62.3
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 3.6e-129 465.7 404 61.4
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 6.2e-129 464.9 396 61.6
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 6.2e-129 464.9 397 60.7
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 8.1e-129 464.5 410 58.8
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.1e-128 464.2 400 60.8
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 1.4e-128 463.8 394 62.2
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 4.0e-128 462.2 394 62.2
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 5.2e-128 461.8 400 60.0
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 5.2e-128 461.8 400 60.0
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 8.9e-128 461.1 393 60.8
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.2e-127 460.7 400 60.8
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 2.0e-127 459.9 396 60.6
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 3.4e-127 459.1 416 58.2
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 7.6e-127 458.0 404 60.1
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 1.7e-126 456.8 393 59.5
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 1.7e-126 456.8 405 60.0
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 3.8e-126 455.7 400 60.5
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 6.4e-126 454.9 401 61.1
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 8.4e-126 454.5 400 59.5
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 1.9e-125 453.4 399 59.4
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 3.2e-125 452.6 461 55.3
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 9.2e-125 451.1 409 59.7
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 1.2e-124 450.7 400 60.5
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 1.2e-124 450.7 398 60.1
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 1.0e-123 447.6 420 57.9
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 1.3e-123 447.2 407 59.2
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 1.9e-122 443.4 399 60.2
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 3.3e-122 442.6 395 59.7
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 5.6e-122 441.8 391 59.1
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 5.6e-122 441.8 392 59.2
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 9.6e-122 441.0 402 59.0
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 1.2e-121 440.7 393 58.5
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 1.1e-120 437.6 422 55.7
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 1.1e-120 437.6 451 55.9
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 1.1e-120 437.6 397 59.9
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 1.4e-120 437.2 407 59.2
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 1.8e-120 436.8 406 57.9
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 5.2e-120 435.3 400 58.0
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 8.9e-120 434.5 400 57.0
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 3.4e-119 432.6 379 63.1
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 1.7e-118 430.3 392 57.9
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 2.9e-118 429.5 383 59.5
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 1.1e-117 427.6 409 58.9
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 1.9e-117 426.8 389 59.4
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 2.1e-116 423.3 393 57.8
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 2.7e-116 422.9 400 58.8
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 6.0e-116 421.8 402 56.0
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 1.7e-115 420.2 399 56.1
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 1.7e-115 420.2 388 58.0
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 2.3e-115 419.9 413 54.0
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 6.6e-115 418.3 406 54.9
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 2.5e-114 416.4 392 58.9
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 4.3e-114 415.6 395 54.7
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 9.6e-114 414.5 413 53.5
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 1.3e-113 414.1 397 55.9
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 6.9e-112 408.3 398 57.5
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 3.4e-111 406.0 412 50.7
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 3.8e-110 402.5 394 56.6
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 1.9e-109 400.2 412 50.5
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 9.3e-109 397.9 395 55.4
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 9.3e-109 397.9 402 55.5
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 7.4e-106 388.3 397 54.7
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 2.1e-105 386.7 393 55.2
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 2.8e-105 386.3 397 54.7
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 6.2e-105 385.2 405 54.3
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 2.6e-103 379.8 405 54.1
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 4.2e-101 372.5 410 52.2
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 1.2e-100 370.9 299 63.5
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 3.5e-100 369.4 399 49.9
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 5.1e-99 365.5 469 47.3
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 1.5e-95 354.0 453 47.2
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 2.2e-94 350.1 322 58.4
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 6.5e-94 348.6 295 59.0
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 7.9e-92 341.7 403 49.6
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 8.7e-91 338.2 268 62.7
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 1.5e-87 327.4 341 52.2
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 2.0e-87 327.0 397 51.6
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 2.5e-82 310.1 406 45.6
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 2.4e-80 303.5 369 48.2
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 1.2e-79 301.2 237 67.5
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 1.0e-78 298.1 425 42.4
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 1.5e-74 284.3 440 42.0
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 3.7e-73 279.6 408 43.9
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 1.2e-71 274.6 397 43.8
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 1.3e-70 271.2 398 42.5
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 5.2e-67 259.2 462 37.0
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 2.6e-66 256.9 369 42.3
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 8.0e-60 235.3 173 64.2
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 1.2e-58 231.5 265 44.2
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 2.0e-58 230.7 217 58.1
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 9.1e-56 221.9 195 63.6
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 4.5e-55 219.5 181 60.2
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 1.7e-49 201.1 309 44.3
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 4.2e-45 186.4 173 52.6
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 5.5e-45 186.0 155 59.4
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 1.8e-43 181.0 174 51.7
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 1.0e-38 165.2 110 68.2
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 8.0e-28 129.0 300 33.0
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 5.2e-27 126.3 92 64.1
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 6.8e-27 125.9 175 50.3
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 6.6e-22 109.4 149 39.6
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 6.6e-22 109.4 193 41.5
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 6.8e-19 99.4 114 47.4
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 3.2e-16 90.5 96 50.0
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 5.4e-16 89.7 72 58.3
MD02G1112300 Malus domestica HOM05D004986 ORTHO05D005898 2.8e-12 77.4 82 48.8
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 2.4e-11 74.3 52 69.2
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 5.2e-11 73.2 64 65.6
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 5.2e-11 73.2 64 65.6
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 1.7e-09 68.2 149 37.6
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 1.4e-08 65.1 80 48.8
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 1.4e-08 65.1 80 48.8
MCO09G766 Micromonas commoda HOM05D004986 ORTHO05D005898 2.1e-07 61.2 347 24.5


User provided reference genes

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