Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B01467 Erythranthe guttata HOM05D005239 ORTHO05D006698 5.3e-176 620.9 317 100.0
SGA_v2.0_scaffold69G23296 Striga asiatica HOM05D005239 ORTHO05D006698 6.6e-134 481.1 321 78.8
SGA_v2.0_scaffold52G19274 Striga asiatica HOM05D005239 ORTHO05D006698 2.6e-130 469.2 321 76.3
Oeu002884.1 Olea europaea HOM05D005239 ORTHO05D006698 2.2e-121 439.5 386 64.2
Nitab4.5_0004264g0020 Nicotiana tabacum HOM05D005239 ORTHO05D006698 1.9e-117 426.4 321 70.1
Sopen01g032450 Solanum pennellii HOM05D005239 ORTHO05D006698 8.9e-115 417.5 328 68.3
Solyc01g080860.3 Solanum lycopersicum HOM05D005239 ORTHO05D006698 1.2e-114 417.2 328 68.0
Peaxi162Scf01144g00013 Petunia axillaris HOM05D005239 ORTHO05D006698 3.4e-114 415.6 323 69.3
vmacro21097 Vaccinium macrocarpon HOM05D005239 ORTHO05D006698 7.5e-114 414.5 323 67.5
CSS0007844 Camellia sinensis var. sinensis HOM05D005239 ORTHO05D006698 1.9e-112 409.8 328 68.3
Hma1.2p1_0601F.1_g187220 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 2.4e-112 409.5 325 69.2
CAN.G1480.7 Capsicum annuum HOM05D005239 ORTHO05D006698 1.0e-110 404.1 248 81.0
PGSC0003DMG400001672 Solanum tuberosum HOM05D005239 ORTHO05D006698 3.0e-110 402.5 355 63.4
unitig_26.g9718 Utricularia gibba HOM05D005239 ORTHO05D006698 3.0e-110 402.5 351 63.0
ECA234G1231 Erigeron canadensis HOM05D005239 ORTHO05D006698 8.6e-110 401.0 319 68.3
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 2.8e-108 396.0 321 67.6
Actinidia21601 Actinidia chinensis HOM05D005239 ORTHO05D006698 3.6e-108 395.6 323 67.2
PGR119G0794 Punica granatum HOM05D005239 ORTHO05D006698 6.2e-108 394.8 327 66.1
COL.COLO4_20862 Corchorus olitorius HOM05D005239 ORTHO05D006698 8.1e-108 394.4 320 65.0
Dinv43567 Davidia involucrata HOM05D005239 ORTHO05D006698 8.1e-108 394.4 239 79.9
Dinv44000 Davidia involucrata HOM05D005239 ORTHO05D001060 1.1e-107 394.0 239 79.5
MELO3C006242.2 Cucumis melo HOM05D005239 ORTHO05D006698 2.3e-107 392.9 326 64.1
HanXRQChr17g0562471 Helianthus annuus HOM05D005239 ORTHO05D006698 3.1e-107 392.5 327 66.1
Cc02_g25930 Coffea canephora HOM05D005239 ORTHO05D006698 4.0e-107 392.1 318 67.0
MD08G1235300 Malus domestica HOM05D005239 ORTHO05D006698 4.0e-107 392.1 330 64.2
TAR629G3002 Trochodendron aralioides HOM05D005239 ORTHO05D006698 5.2e-107 391.7 328 64.9
Actinidia33289 Actinidia chinensis HOM05D005239 ORTHO05D006698 6.8e-107 391.3 323 66.9
CiPaw.13G020400 Carya illinoinensis HOM05D005239 ORTHO05D006698 1.2e-106 390.6 323 68.1
Rhsim01G0145300 Rhododendron simsii HOM05D005239 ORTHO05D006698 1.2e-106 390.6 356 61.5
CsaV3_3G010220 Cucumis sativus L. HOM05D005239 ORTHO05D006698 2.0e-106 389.8 327 63.9
Duzib151G1142 Durio zibethinus HOM05D005239 ORTHO05D006698 2.0e-106 389.8 334 63.2
RcHm_v2.0_Chr6g0273481 Rosa chinensis HOM05D005239 ORTHO05D006698 4.4e-106 388.7 326 67.2
Gohir.A09G201600 Gossypium hirsutum HOM05D005239 ORTHO05D006698 5.8e-106 388.3 333 64.6
Gorai.006G218900 Gossypium raimondii HOM05D005239 ORTHO05D006698 9.9e-106 387.5 333 64.3
CANSAT54G1536 Cannabis sativa HOM05D005239 ORTHO05D006698 1.3e-105 387.1 318 66.4
DCAR_029633 Daucus carota HOM05D005239 ORTHO05D006698 1.3e-105 387.1 317 66.6
Manes.05G061000 Manihot esculenta HOM05D005239 ORTHO05D006698 1.7e-105 386.7 322 66.5
Nn6g33642 Nelumbo nucifera HOM05D005239 ORTHO05D006698 1.7e-105 386.7 329 63.8
Sed0010493 Sechium edule HOM05D005239 ORTHO05D006698 2.2e-105 386.3 316 66.1
Gohir.D09G195500 Gossypium hirsutum HOM05D005239 ORTHO05D006698 2.9e-105 386.0 333 64.3
Prupe.1G571600 Prunus persica HOM05D005239 ORTHO05D006698 6.4e-105 384.8 323 64.7
TWI59G0212 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 1.9e-104 383.3 325 65.5
Thecc.04G216000 Theobroma cacao HOM05D005239 ORTHO05D006698 2.4e-104 382.9 326 64.1
ClCG05G002730 Citrullus lanatus HOM05D005239 ORTHO05D006698 9.2e-104 380.9 327 64.2
QL04p024849 Quercus lobata HOM05D005239 ORTHO05D006698 2.1e-103 379.8 238 77.7
Sed0027364 Sechium edule HOM05D005239 ORTHO05D006698 2.1e-103 379.8 319 63.9
Eucgr.H02846 Eucalyptus grandis HOM05D005239 ORTHO05D006698 3.5e-103 379.0 347 60.8
TWI14G1099 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 4.6e-103 378.6 324 64.2
FvH4_2g12720 Fragaria vesca HOM05D005239 ORTHO05D006698 6.0e-103 378.3 318 66.7
TAR636G2805 Trochodendron aralioides HOM05D005239 ORTHO05D006698 6.0e-103 378.3 330 63.6
Glyma.20G243400 Glycine max HOM05D005239 ORTHO05D006698 1.7e-102 376.7 249 75.1
HPP92_001886 Vanilla planifolia HOM05D005239 ORTHO05D006698 1.7e-102 376.7 238 76.5
Sc20g0003020 Simmondsia chinensis HOM05D005239 ORTHO05D006698 3.9e-102 375.6 247 76.9
AUR62035533 Chenopodium quinoa HOM05D005239 ORTHO05D006698 5.1e-102 375.2 325 62.8
PSO302G0170 Papaver somniferum HOM05D005239 ORTHO05D006698 2.5e-101 372.9 348 60.6
AUR62041654 Chenopodium quinoa HOM05D005239 ORTHO05D006698 3.3e-101 372.5 321 62.9
FAN27G2303 Fragaria x ananassa HOM05D005239 ORTHO05D006698 3.3e-101 372.5 331 64.4
Cpa.g.sc20.28 Carica papaya HOM05D005239 ORTHO05D006698 4.3e-101 372.1 246 74.4
PSO170G2576 Papaver somniferum HOM05D005239 ORTHO05D006698 4.3e-101 372.1 338 59.2
Medtr1g116110 Medicago truncatula HOM05D005239 ORTHO05D006698 9.6e-101 370.9 238 76.5
Aqoxy3G02472 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 1.2e-100 370.5 332 62.0
Lsat_1_v5_gn_4_39040 Lactuca sativa HOM05D005239 ORTHO05D006698 1.6e-100 370.2 325 63.4
Psat6g232360 Pisum sativum HOM05D005239 ORTHO05D006698 2.8e-100 369.4 238 77.7
Potri.002G216100 Populus trichocarpa HOM05D005239 ORTHO05D006698 2.8e-100 369.4 229 80.3
Zm00001eb402310 Zea mays HOM05D005239 ORTHO05D006698 2.8e-100 369.4 224 80.4
FAN15G3107 Fragaria x ananassa HOM05D005239 ORTHO05D006698 8.1e-100 367.9 331 63.7
CDE04G1215 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 1.1e-99 367.5 330 62.7
Sabra02G0168400 Salix brachista HOM05D005239 ORTHO05D006698 1.4e-99 367.1 336 62.8
Ca_11344_v3 Cicer arietinum L. HOM05D005239 ORTHO05D006698 1.8e-99 366.7 277 69.3
Atru.chr9.1540 Acer truncatum HOM05D005239 ORTHO05D006698 3.1e-99 365.9 317 62.8
Ah.06g191320 Amaranthus hybridus HOM05D005239 ORTHO05D006698 4.0e-99 365.5 321 62.9
arahy.Tifrunner.gnm1.ann1.X9CQTL Arachis hypogaea HOM05D005239 ORTHO05D006698 4.0e-99 365.5 248 73.8
THA.LOC104802511 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 4.0e-99 365.5 321 62.3
THA.LOC104817164 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 4.0e-99 365.5 325 61.2
Os01g0527700 Oryza sativa ssp. japonica HOM05D005239 ORTHO05D006698 6.9e-99 364.8 231 76.6
GSVIVG01018386001 Vitis vinifera HOM05D005239 ORTHO05D006698 6.9e-99 364.8 317 63.1
Lj5g0010357 Lotus japonicus HOM05D005239 ORTHO05D006698 2.0e-98 363.2 277 68.6
Ciclev10020370m.g Citrus clementina HOM05D005239 ORTHO05D006698 2.6e-98 362.8 247 74.5
Lalb_Chr02g0143811 Lupinus albus HOM05D005239 ORTHO05D006698 3.4e-98 362.5 243 73.7
VMungo0720G0476 Vigna mungo HOM05D005239 ORTHO05D006698 4.4e-98 362.1 248 73.8
Hma1.2p1_0601F.1_g187230 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 5.8e-98 361.7 295 67.8
ATR1153G024 Amborella trichopoda HOM05D005239 ORTHO05D006698 7.6e-98 361.3 232 74.1
TPR.G10426 Trifolium pratense HOM05D005239 ORTHO05D006698 1.3e-97 360.5 251 72.5
EL10Ac4g08842 Beta vulgaris HOM05D005239 ORTHO05D006698 2.9e-97 359.4 317 63.1
arahy.Tifrunner.gnm1.ann1.XN1C7B Arachis hypogaea HOM05D005239 ORTHO05D006698 3.8e-97 359.0 229 77.3
Haze_02934 Corylus avellana HOM05D005239 ORTHO05D006698 3.8e-97 359.0 345 60.6
Phvul.007G006700 Phaseolus vulgaris HOM05D005239 ORTHO05D006698 6.4e-97 358.2 248 73.0
Aa31LG1G26110 Aethionema arabicum HOM05D005239 ORTHO05D006698 1.9e-96 356.7 320 60.3
Lj9A547G68 Lonicera japonica HOM05D005239 ORTHO05D006698 2.7e-95 352.8 208 81.7
Sp4g26610 Schrenkiella parvula HOM05D005239 ORTHO05D006698 2.7e-95 352.8 319 59.6
BolC4t28610H Brassica oleracea HOM05D005239 ORTHO05D006698 4.6e-95 352.1 320 59.7
BcaC02g07098 Brassica carinata HOM05D005239 ORTHO05D006698 6.0e-95 351.7 319 59.2
AL4G43540 Arabidopsis lyrata HOM05D005239 ORTHO05D006698 1.3e-94 350.5 323 59.1
BcaB06g29384 Brassica carinata HOM05D005239 ORTHO05D006698 1.3e-94 350.5 318 58.2
BraA04t18797Z Brassica rapa HOM05D005239 ORTHO05D006698 1.3e-94 350.5 326 58.6
Carub.0004s2708 Capsella rubella HOM05D005239 ORTHO05D006698 2.3e-94 349.7 323 58.8
Thhalv10001456m.g Eutrema salsugineum HOM05D005239 ORTHO05D006698 3.0e-94 349.4 323 58.5
AT2G44520 Arabidopsis thaliana HOM05D005239 ORTHO05D006698 2.1e-92 343.2 323 57.9
C04p05410 Brassica napus HOM05D005239 ORTHO05D006698 4.0e-91 339.0 224 74.1
BolC4t22181H Brassica oleracea HOM05D005239 ORTHO05D006698 4.0e-91 339.0 224 74.1
BcaNung07053 Brassica carinata HOM05D005239 ORTHO05D006698 2.6e-90 336.3 307 58.6
Zm00001eb005400 Zea mays HOM05D005239 ORTHO05D006698 3.4e-90 335.9 205 81.0
Nitab4.5_0001476g0120 Nicotiana tabacum HOM05D005239 ORTHO05D006698 1.1e-88 330.9 321 59.2
PSO357G0304 Papaver somniferum HOM05D005239 ORTHO05D006698 1.5e-85 320.5 201 78.1
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 4.3e-85 318.9 208 73.6
BcaC02g12301 Brassica carinata HOM05D005239 ORTHO05D006698 1.6e-84 317.0 217 71.9
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 2.1e-84 316.6 208 73.1
AagrBONN_evm.TU.Sc2ySwM_369.187 Anthoceros agrestis HOM05D005239 ORTHO05D006698 2.0e-82 310.1 244 61.5
SEGI_24425 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 6.4e-81 305.1 207 70.5
Duzib212G0896 Durio zibethinus HOM05D005239 ORTHO05D006698 2.3e-78 296.6 332 53.0
Oeu037395.1 Olea europaea HOM05D005239 ORTHO05D006698 5.6e-77 292.0 337 54.3
MD15G1426600 Malus domestica HOM05D005239 ORTHO05D006698 5.8e-74 282.0 178 78.1
Pp3c14_19200 Physcomitrium patens HOM05D005239 ORTHO05D006698 1.7e-73 280.4 230 60.9
Mapoly0029s0153 Marchantia polymorpha HOM05D005239 ORTHO05D006698 3.2e-72 276.2 318 47.5
CBR_g3821 Chara braunii HOM05D005239 ORTHO05D006698 7.9e-71 271.6 238 58.8
SMO364G0841 Selaginella moellendorffii HOM05D005239 ORTHO05D006698 1.8e-70 270.4 223 57.4
CAN.G74.42 Capsicum annuum HOM05D005239 ORTHO05D006698 2.1e-63 246.9 222 60.8
Aqoxy5G02001 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 7.9e-63 245.0 200 63.5
Cre12.g516350 Chlamydomonas reinhardtii HOM05D005239 ORTHO05D006698 2.3e-62 243.4 219 56.6
A05p04670 Brassica napus HOM05D005239 ORTHO05D006698 3.1e-59 233.0 150 73.3
BraA05t19443Z Brassica rapa HOM05D005239 ORTHO05D006698 3.1e-59 233.0 150 73.3
MCO03G363 Micromonas commoda HOM05D005239 ORTHO05D006698 3.9e-54 216.1 217 52.1
PRCOL_00000009 Prasinoderma coloniale HOM05D005239 ORTHO05D006698 3.9e-54 216.1 214 50.9
CDE12G0888 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 2.0e-50 203.8 119 82.4
CARHR139710 Cardamine hirsuta HOM05D005239 ORTHO05D006698 1.3e-49 201.1 119 78.2
FAN24G3432 Fragaria x ananassa HOM05D005239 ORTHO05D006698 3.8e-41 172.9 200 56.0
Cfa027222 Carpinus fangiana HOM05D005239 ORTHO05D006698 2.2e-33 147.1 266 36.8
PGR004G1759 Punica granatum HOM05D005239 ORTHO05D006698 1.5e-32 144.4 121 66.1
PSO081G0040 Papaver somniferum HOM05D005239 ORTHO05D006698 4.8e-28 129.4 84 73.8
BcaB02g08828 Brassica carinata HOM05D005239 ORTHO05D006698 3.8e-25 119.8 109 58.7
SHI13675 Sapria himalayana HOM05D005239 ORTHO05D006698 3.8e-25 119.8 76 71.1
Glyma.10G293300 Glycine max HOM05D005239 ORTHO05D006698 2.1e-23 114.0 73 71.2
MD15G1426900 Malus domestica HOM05D005239 ORTHO05D006698 9.8e-21 105.1 61 75.4
CDE12G0056 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 1.7e-20 104.4 86 64.0
RcHm_v2.0_Chr6g0271171 Rosa chinensis HOM05D005239 ORTHO05D006698 2.8e-20 103.6 71 70.4
RcHm_v2.0_Chr7g0200821 Rosa chinensis HOM05D005239 ORTHO05D006698 1.2e-18 98.2 71 67.6
Cc02_g25970 Coffea canephora HOM05D005239 ORTHO05D006698 6.4e-12 75.9 96 44.8
SEGI_27712 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 1.6e-10 71.2 57 61.4
SHI13676 Sapria himalayana HOM05D005239 ORTHO05D006698 1.5e-08 64.7 54 63.0


User provided reference genes

Program Settings