Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 0.0e+00 1141.3 597 100.0
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 6.4e-215 751.1 594 68.2
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 6.6e-212 741.1 601 66.6
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 1.7e-204 716.5 576 66.7
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 3.3e-203 712.2 576 66.7
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 2.8e-194 682.6 614 60.7
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 3.8e-191 672.2 617 59.0
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 6.4e-191 671.4 582 63.2
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 1.9e-190 669.8 596 61.2
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 3.2e-190 669.1 655 57.1
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 7.1e-190 667.9 623 59.9
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 3.5e-189 665.6 614 58.8
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 7.9e-189 664.5 614 60.3
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 8.7e-188 661.0 618 59.1
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 1.3e-186 657.1 618 59.5
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 5.3e-185 651.7 610 58.2
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 3.4e-184 649.0 595 59.0
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 1.3e-183 647.1 590 59.7
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 1.3e-183 647.1 618 58.4
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 2.2e-183 646.4 597 58.5
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 2.9e-183 646.0 598 59.2
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 2.9e-183 646.0 587 60.0
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 4.9e-183 645.2 597 58.5
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 6.5e-183 644.8 582 60.0
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 8.4e-183 644.4 606 58.6
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.4e-182 643.7 615 59.0
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 1.9e-182 643.3 615 57.7
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 1.9e-182 643.3 600 59.5
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 5.5e-182 641.7 606 58.6
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 2.3e-180 636.3 594 58.4
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 1.1e-179 634.0 616 58.0
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.9e-179 633.3 592 58.8
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 2.5e-179 632.9 593 58.7
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 2.5e-179 632.9 625 57.0
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 2.8e-178 629.4 571 60.2
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 1.1e-177 627.5 608 57.4
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 1.5e-176 623.6 618 55.8
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 7.6e-176 621.3 623 56.7
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 2.2e-175 619.8 581 59.0
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 1.1e-174 617.5 565 59.6
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 3.2e-174 615.9 573 58.3
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 5.5e-174 615.1 598 58.0
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 1.2e-173 614.0 584 56.7
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 1.6e-173 613.6 591 58.4
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 2.1e-173 613.2 582 57.6
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 4.6e-173 612.1 568 60.0
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 4.6e-173 612.1 598 57.2
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 1.0e-172 610.9 574 58.4
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 1.3e-172 610.5 615 56.1
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 3.0e-172 609.4 624 55.3
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 3.0e-172 609.4 600 55.8
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 5.1e-172 608.6 609 56.2
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 8.7e-172 607.8 555 60.5
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 4.3e-171 605.5 645 54.1
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 1.3e-170 604.0 587 56.2
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 1.7e-170 603.6 592 56.9
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 2.2e-170 603.2 576 56.2
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 2.2e-170 603.2 601 56.1
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 2.8e-170 602.8 593 58.7
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 2.8e-170 602.8 582 56.0
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 1.1e-169 600.9 591 56.9
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 1.4e-169 600.5 602 56.1
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 2.4e-169 599.7 598 55.9
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 9.1e-169 597.8 641 55.4
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 1.2e-168 597.4 586 56.8
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 3.4e-168 595.9 574 57.0
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 7.7e-168 594.7 577 56.8
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 1.0e-167 594.3 606 55.3
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 1.0e-167 594.3 606 55.3
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 2.2e-167 593.2 586 57.7
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 3.8e-167 592.4 582 56.5
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 3.2e-166 589.3 594 55.4
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 4.2e-166 589.0 590 55.9
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 5.5e-166 588.6 603 53.6
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 9.4e-166 587.8 605 56.0
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 1.8e-164 583.6 593 55.3
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 3.0e-164 582.8 597 54.3
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 8.8e-164 581.3 592 55.1
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 3.7e-162 575.9 609 53.2
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 1.1e-161 574.3 607 53.9
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 1.4e-161 573.9 595 53.1
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 3.1e-161 572.8 581 55.4
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 3.1e-161 572.8 573 57.4
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 4.1e-161 572.4 599 55.4
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 4.1e-161 572.4 601 53.4
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 2.9e-159 566.2 606 54.1
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 1.1e-155 554.3 611 52.4
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 2.0e-155 553.5 636 51.3
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 7.4e-155 551.6 584 52.9
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 4.1e-153 545.8 611 51.4
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 1.6e-152 543.9 584 52.6
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 1.3e-151 540.8 638 50.5
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 5.0e-151 538.9 568 51.4
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 1.5e-150 537.3 612 50.5
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 4.7e-149 532.3 563 52.0
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 1.2e-147 527.7 607 53.5
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 2.0e-147 526.9 574 53.5
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 7.5e-147 525.0 630 50.2
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 1.2e-144 517.7 501 57.7
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 8.5e-143 511.5 481 57.4
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 8.5e-143 511.5 611 50.2
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 2.5e-142 510.0 626 49.4
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 2.5e-142 510.0 546 53.1
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 2.2e-138 496.9 572 50.9
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 3.1e-137 493.0 627 49.8
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 5.0e-135 485.7 563 50.4
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 3.3e-126 456.4 583 48.9
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 2.2e-122 443.7 599 47.9
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 3.7e-122 443.0 475 54.5
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 3.2e-121 439.9 465 54.8
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 2.9e-114 416.8 588 43.5
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 3.3e-110 403.3 592 40.7
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 1.2e-107 394.8 382 58.9
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 1.9e-105 387.5 617 40.2
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 2.8e-93 347.1 461 48.2
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 5.4e-81 306.2 354 50.3
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 3.9e-79 300.1 537 36.5
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 3.7e-77 293.5 253 60.1
ECA246G3488 Erigeron canadensis HOM05D004142 ORTHO05D005411 4.8e-69 266.5 338 47.6
HPP92_025664 Vanilla planifolia HOM05D004142 ORTHO05D005411 1.1e-65 255.4 271 52.8
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 5.5e-65 253.1 349 44.1
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 7.9e-64 249.2 361 41.3
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 2.2e-53 214.5 306 39.5
Ca_05793_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 1.4e-52 211.8 210 55.7
Oeu037461.1 Olea europaea HOM05D004142 ORTHO05D005411 3.1e-52 210.7 119 89.1
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 5.3e-52 209.9 281 42.3
GSVIVG01004114001 Vitis vinifera HOM05D004142 ORTHO05D005411 5.3e-52 209.9 208 53.8
Cpa.g.sc60.19 Carica papaya HOM05D004142 ORTHO05D005411 2.0e-51 208.0 224 53.1
Eucgr.H04975 Eucalyptus grandis HOM05D004142 ORTHO05D005411 5.9e-51 206.5 250 47.6
MCO08G220 Micromonas commoda HOM05D004142 ORTHO05D005411 7.0e-44 183.0 209 44.5
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 4.7e-40 170.2 603 27.4
SHI03796 Sapria himalayana HOM05D004142 ORTHO05D005411 1.8e-39 168.3 193 47.2
SEGI_26341 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 8.8e-39 166.0 149 59.1
TAR318G0001 Trochodendron aralioides HOM05D004142 ORTHO05D005411 8.8e-39 166.0 152 58.6
GSVIVG01004442001 Vitis vinifera HOM05D004142 ORTHO05D005411 2.0e-38 164.9 144 55.6
Hma1.2p1_0796F.1_g219330 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 2.2e-37 161.4 108 70.4
HPP92_025663 Vanilla planifolia HOM05D004142 ORTHO05D005411 2.4e-36 157.9 197 46.2
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 7.7e-35 152.9 111 73.0
Zm00001eb152690 Zea mays HOM05D004142 ORTHO05D000502 3.8e-34 150.6 101 70.3
AagrBONN_evm.TU.Sc2ySwM_228.5300 Anthoceros agrestis HOM05D004142 ORTHO05D005411 4.8e-29 133.7 286 33.6
BcaB07g31739 Brassica carinata HOM05D004142 ORTHO05D005411 1.8e-28 131.7 205 42.9
AagrBONN_evm.TU.Sc2ySwM_228.5299 Anthoceros agrestis HOM05D004142 ORTHO05D005411 4.5e-27 127.1 140 46.4
CSS0025136 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 5.9e-27 126.7 167 48.5
Zm00001eb177550 Zea mays HOM05D004142 ORTHO05D005411 1.5e-25 122.1 87 67.8
SEGI_03267 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 3.2e-25 120.9 137 46.7
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 4.2e-25 120.6 87 66.7
SEGI_12604 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 3.6e-24 117.5 115 52.2
TPR.G40409 Trifolium pratense HOM05D004142 ORTHO05D005411 1.2e-22 112.5 65 81.5
FAN27G1246 Fragaria x ananassa HOM05D004142 ORTHO05D005411 2.2e-21 108.2 124 54.0
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 3.7e-21 107.5 113 54.9
Oeu003432.1 Olea europaea HOM05D004142 ORTHO05D005411 8.3e-21 106.3 106 53.8
BcaB07g31742 Brassica carinata HOM05D004142 ORTHO05D005411 1.1e-20 105.9 176 37.5
SEGI_29991 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 1.1e-20 105.9 257 31.9
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 7.0e-20 103.2 74 67.6
Eucgr.H04983 Eucalyptus grandis HOM05D004142 ORTHO05D005411 1.6e-19 102.1 70 64.3
MD11G1014300 Malus domestica HOM05D004142 ORTHO05D005411 2.6e-14 84.7 81 58.0
Lsat_1_v5_gn_5_140320 Lactuca sativa HOM05D004142 ORTHO05D036439 3.4e-14 84.3 75 61.3
Psat3g160080 Pisum sativum HOM05D004142 ORTHO05D005411 3.4e-14 84.3 159 34.0
BcaC04g22984 Brassica carinata HOM05D004142 ORTHO05D005411 7.5e-14 83.2 75 62.7
Medtr5g078810 Medicago truncatula HOM05D004142 ORTHO05D005411 2.7e-11 74.7 55 70.9
Zm00001eb028530 Zea mays HOM05D004142 ORTHO05D000502 5.9e-11 73.6 64 56.2
SEGI_00997 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 2.1e-08 65.1 120 35.0
RcHm_v2.0_Chr1g0336401 Rosa chinensis HOM05D004142 ORTHO05D005411 9.8e-06 56.2 49 59.2


User provided reference genes

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