Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B01162 Erythranthe guttata HOM05D007286 ORTHO05D008955 1.9e-257 892.1 481 100.0
MSTRG.20479 Avicennia marina HOM05D007286 ORTHO05D008955 5.1e-122 442.2 523 57.0
SGA_v2.0_scaffold143G35713 Striga asiatica HOM05D007286 ORTHO05D008955 2.6e-102 376.7 510 51.4
Oeu013048.2 Olea europaea HOM05D007286 ORTHO05D008955 5.0e-93 345.9 559 47.2
SalBow8G2801 Salvia bowleyana HOM05D007286 ORTHO05D008955 5.5e-92 342.4 428 52.8
Peaxi162Scf00647g00320 Petunia axillaris HOM05D007286 ORTHO05D008955 3.3e-76 290.0 566 41.9
PGSC0003DMG401027501 Solanum tuberosum HOM05D007286 ORTHO05D008955 6.1e-75 285.8 573 40.5
Sopen01g040600 Solanum pennellii HOM05D007286 ORTHO05D008955 6.4e-72 275.8 572 39.7
Solyc01g096890.4 Solanum lycopersicum HOM05D007286 ORTHO05D008955 2.4e-71 273.9 572 39.7
CAN.G134.51 Capsicum annuum HOM05D007286 ORTHO05D008955 9.2e-71 271.9 575 40.3
Nitab4.5_0001611g0060 Nicotiana tabacum HOM05D007286 ORTHO05D008955 1.2e-70 271.6 590 38.0
Rhsim07G0072400 Rhododendron simsii HOM05D007286 ORTHO05D008955 5.0e-69 266.2 575 40.0
Nitab4.5_0005056g0090 Nicotiana tabacum HOM05D007286 ORTHO05D008955 1.6e-67 261.2 615 36.6
Hma1.2p1_0233F.1_g097980 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 2.3e-66 257.3 588 39.8
GSVIVG01027344001 Vitis vinifera HOM05D007286 ORTHO05D008955 6.0e-62 242.7 602 37.9
Prupe.2G060300 Prunus persica HOM05D007286 ORTHO05D008955 3.6e-59 233.4 602 36.0
Nn7g37274 Nelumbo nucifera HOM05D007286 ORTHO05D008955 1.1e-58 231.9 601 36.3
CSS0007228 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.4e-58 231.5 569 36.6
CSS0046865 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D008955 1.4e-58 231.5 569 36.6
TAR555G0002 Trochodendron aralioides HOM05D007286 ORTHO05D008955 3.7e-56 223.4 607 35.9
Actinidia12136 Actinidia chinensis HOM05D007286 ORTHO05D008955 3.2e-55 220.3 580 37.2
PGR142G0126 Punica granatum HOM05D007286 ORTHO05D008955 2.1e-54 217.6 599 35.4
Dinv20486 Davidia involucrata HOM05D007286 ORTHO05D008955 2.3e-53 214.2 372 42.2
Lsat_1_v5_gn_5_41960 Lactuca sativa HOM05D007286 ORTHO05D008955 5.1e-53 213.0 564 37.4
HanXRQChr07g0192711 Helianthus annuus HOM05D007286 ORTHO05D008955 9.5e-52 208.8 542 37.3
Manes.10G063001 Manihot esculenta HOM05D000188 ORTHO05D000362 9.5e-52 208.8 584 35.6
Ciclev10000662m.g Citrus clementina HOM05D007286 ORTHO05D008955 1.2e-51 208.4 614 34.5
MD02G1265200 Malus domestica HOM05D007286 ORTHO05D008955 2.8e-51 207.2 580 35.0
MBI19_g06405_MAGBIO Magnolia biondii HOM05D007286 ORTHO05D008955 3.6e-51 206.8 586 36.9
QL04p050581 Quercus lobata HOM05D007286 ORTHO05D008955 1.4e-50 204.9 593 35.8
CANSAT56G4194 Cannabis sativa HOM05D007286 ORTHO05D008955 3.1e-50 203.8 584 35.1
CANSAT56G1680 Cannabis sativa HOM05D007286 ORTHO05D008955 5.2e-50 203.0 576 35.2
COL.COLO4_28923 Corchorus olitorius HOM05D007286 ORTHO05D008955 4.4e-49 199.9 612 35.0
CiPaw.13G047300 Carya illinoinensis HOM05D007286 ORTHO05D008955 1.7e-48 198.0 573 35.3
arahy.Tifrunner.gnm1.ann1.5NH7JH Arachis hypogaea HOM05D007286 ORTHO05D008955 3.7e-48 196.8 550 35.5
FAN06G0358 Fragaria x ananassa HOM05D007286 ORTHO05D008955 6.4e-48 196.1 601 33.6
FvH4_7g04960 Fragaria vesca HOM05D007286 ORTHO05D008955 3.2e-47 193.7 601 33.4
Potri.010G247100 Populus trichocarpa HOM05D007286 ORTHO05D008955 5.4e-47 193.0 610 33.8
ECA246G2791 Erigeron canadensis HOM05D000076 ORTHO05D002730 9.2e-47 192.2 542 34.9
RcHm_v2.0_Chr1g0331161 Rosa chinensis HOM05D007286 ORTHO05D008955 4.6e-46 189.9 609 33.5
TWI38G1128 Tripterygium wilfordii HOM05D007286 ORTHO05D008955 6.0e-46 189.5 592 34.5
Cfa010442 Carpinus fangiana HOM05D007286 ORTHO05D008955 7.8e-46 189.1 576 34.0
FAN10G3167 Fragaria x ananassa HOM05D007286 ORTHO05D008955 1.3e-45 188.3 599 33.6
EL10Ac4g08793 Beta vulgaris HOM05D007286 ORTHO05D008955 5.1e-45 186.4 564 33.7
FAN03G1022 Fragaria x ananassa HOM05D007286 ORTHO05D008955 5.1e-45 186.4 594 33.3
Glyma.08G227900 Glycine max HOM05D007286 ORTHO05D008955 8.6e-45 185.7 556 35.3
Lalb_Chr19g0132561 Lupinus albus HOM05D007286 ORTHO05D008955 2.1e-43 181.0 579 35.1
Eucgr.G02637 Eucalyptus grandis HOM05D007286 ORTHO05D008955 3.6e-43 180.3 579 33.5
Psat4g141960 Pisum sativum HOM05D007286 ORTHO05D008955 4.7e-43 179.9 574 35.5
Hund06829 Selenicereus undatus HOM05D007286 ORTHO05D008955 4.7e-43 179.9 529 35.0
arahy.Tifrunner.gnm1.ann1.VD1ICN Arachis hypogaea HOM05D007286 ORTHO05D008955 1.4e-42 178.3 586 32.4
Sabra10G0192500 Salix brachista HOM05D007286 ORTHO05D008955 4.0e-42 176.8 609 32.0
Phvul.011G187500 Phaseolus vulgaris HOM05D007286 ORTHO05D008955 5.2e-42 176.4 542 33.4
Potri.008G012000 Populus trichocarpa HOM05D007286 ORTHO05D008955 5.2e-42 176.4 603 33.0
Aqoxy1G00088 Aquilegia oxysepala HOM05D007286 ORTHO05D008955 2.6e-41 174.1 604 32.6
Gorai.009G301600 Gossypium raimondii HOM05D007286 ORTHO05D008955 3.4e-41 173.7 586 32.3
Gohir.A05G285500 Gossypium hirsutum HOM05D007286 ORTHO05D008955 4.4e-41 173.3 586 32.1
Gohir.D05G286600 Gossypium hirsutum HOM05D007286 ORTHO05D008955 9.9e-41 172.2 586 32.1
Sc09g0004920 Simmondsia chinensis HOM05D007286 ORTHO05D008955 2.2e-40 171.0 581 32.0
VMungo1127G2168 Vigna mungo HOM05D007286 ORTHO05D008955 2.9e-40 170.6 278 43.2
Medtr8g044120 Medicago truncatula HOM05D007286 ORTHO05D008955 4.9e-40 169.9 529 35.5
Atru.chr12.1143 Acer truncatum HOM05D007286 ORTHO05D008955 1.9e-39 167.9 543 34.3
PSO339G4644 Papaver somniferum HOM05D007286 ORTHO05D008955 3.2e-39 167.2 560 33.6
Duzib128G1558 Durio zibethinus HOM05D000138 ORTHO05D008955 9.3e-39 165.6 568 31.2
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 1.2e-38 165.2 529 32.9
AUR62034104 Chenopodium quinoa HOM05D007286 ORTHO05D008955 1.2e-38 165.2 587 33.9
Sed0010854 Sechium edule HOM05D007286 ORTHO05D008955 2.7e-38 164.1 573 33.3
TPR.G36317 Trifolium pratense HOM05D007286 ORTHO05D008955 4.6e-38 163.3 272 43.4
Thecc.10G130100 Theobroma cacao HOM05D007286 ORTHO05D008955 1.3e-37 161.8 584 31.3
AUR62041274 Chenopodium quinoa HOM05D007286 ORTHO05D008955 3.0e-37 160.6 583 31.0
Lj3g0009162 Lotus japonicus HOM05D007286 ORTHO05D008955 5.1e-37 159.8 518 32.8
vmacro23447 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 1.5e-36 158.3 372 37.9
Sabra08G0007300 Salix brachista HOM05D007286 ORTHO05D008955 1.9e-36 157.9 613 31.3
vmacro13789 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 1.9e-36 157.9 372 37.9
CDE04G1177 Ceratophyllum demersum HOM05D007286 ORTHO05D008955 2.5e-36 157.5 522 35.4
ClCG05G022150 Citrullus lanatus HOM05D007286 ORTHO05D008955 1.8e-34 151.4 580 32.6
MELO3C012308.2 Cucumis melo HOM05D007286 ORTHO05D008955 6.9e-34 149.4 576 33.3
CsaV3_5G034980 Cucumis sativus L. HOM05D007286 ORTHO05D008955 2.9e-32 144.1 577 33.3
Cc07_g21350 Coffea canephora HOM05D007286 ORTHO05D008955 2.4e-31 141.0 267 41.9
ATR0307G001 Amborella trichopoda HOM05D007286 ORTHO05D008955 9.3e-31 139.0 449 35.2
Ca_12172_v3 Cicer arietinum L. HOM05D007286 ORTHO05D008955 2.1e-30 137.9 398 35.4
Cpa.g.sc54.34 Carica papaya HOM05D007286 ORTHO05D008955 1.0e-29 135.6 125 58.4
Haze_03401 Corylus avellana HOM05D007286 ORTHO05D008955 1.5e-28 131.7 500 32.2
DCAR_025313 Daucus carota HOM05D007286 ORTHO05D008955 4.3e-28 130.2 411 33.8
HPP92_018000 Vanilla planifolia HOM05D007286 ORTHO05D008955 5.8e-25 119.8 563 28.4
Cc07_g21330 Coffea canephora HOM05D007286 ORTHO05D008955 1.6e-22 111.7 246 39.8
Hma1.2p1_2056F.1_g312790 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 1.0e-21 109.0 126 53.2
unitig_22.g5338 Utricularia gibba HOM05D007286 ORTHO05D008955 2.5e-20 104.4 283 35.7
Hma1.2p1_0892F.1_g233190 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 4.8e-19 100.1 105 54.3
vmacro13790 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 2.0e-17 94.7 209 36.8
vmacro23446 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 2.0e-17 94.7 209 36.8
SalBow8G3990 Salvia bowleyana HOM05D007286 ORTHO05D008955 4.5e-17 93.6 118 50.0
Glyma.15G221551 Glycine max HOM05D007286 ORTHO05D008955 2.5e-15 87.8 174 40.8
TAR626G1948 Trochodendron aralioides HOM05D005518 ORTHO05D001269 4.6e-14 83.6 131 42.0
Zm00001eb093550 Zea mays HOM05D007286 ORTHO05D008955 1.3e-13 82.0 598 26.3
Atru.chr9.1022 Acer truncatum HOM05D005518 ORTHO05D001269 8.7e-13 79.3 141 34.8
SEGI_11479 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 1.5e-12 78.6 132 37.1
HPP92_026687 Vanilla planifolia HOM05D007286 ORTHO05D008955 1.5e-12 78.6 181 33.7
CiPaw.11G011000 Carya illinoinensis HOM05D005518 ORTHO05D001269 1.9e-12 78.2 217 29.5
Dinv04847 Davidia involucrata HOM05D005518 ORTHO05D001269 3.3e-12 77.4 272 29.4
PSO384G4662 Papaver somniferum HOM05D007286 ORTHO05D008955 4.3e-12 77.0 193 34.7
Manes.06G116500 Manihot esculenta HOM05D005518 ORTHO05D001269 5.7e-12 76.6 103 43.7
SEGI_40207 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 5.7e-12 76.6 424 27.1
PGR044G0025 Punica granatum HOM05D005518 ORTHO05D001269 3.7e-11 73.9 128 37.5
Zm00001eb388520 Zea mays HOM05D005518 ORTHO05D001269 4.8e-11 73.6 99 46.5
MBI14_g12740_MAGBIO Magnolia biondii HOM05D005518 ORTHO05D001269 6.3e-11 73.2 126 37.3
Ciclev10019441m.g Citrus clementina HOM05D005518 ORTHO05D001269 8.2e-11 72.8 289 27.7
Os11g0129800 Oryza sativa ssp. japonica HOM05D007286 ORTHO05D008955 8.2e-11 72.8 544 27.0
PSO782G5170 Papaver somniferum HOM05D005518 ORTHO05D001269 1.1e-10 72.4 120 38.3
Oeu023474.2 Olea europaea HOM05D005518 ORTHO05D001269 1.8e-10 71.6 267 28.5
COL.COLO4_16831 Corchorus olitorius HOM05D005518 ORTHO05D001269 2.4e-10 71.2 122 35.2
Duzib205G1346 Durio zibethinus HOM05D005518 ORTHO05D001269 2.4e-10 71.2 128 36.7
Lj1g0006481 Lotus japonicus HOM05D005518 ORTHO05D001269 2.4e-10 71.2 96 42.7
GSVIVG01003640001 Vitis vinifera HOM05D005518 ORTHO05D001269 3.1e-10 70.9 421 28.0
DCAR_007472 Daucus carota HOM05D005518 ORTHO05D001269 5.3e-10 70.1 134 35.8
Psat5g139920 Pisum sativum HOM05D005518 ORTHO05D001269 5.3e-10 70.1 264 27.7
Glyma.06G172500 Glycine max HOM05D005518 ORTHO05D001269 9.0e-10 69.3 261 26.8
Nn1g07622 Nelumbo nucifera HOM05D005518 ORTHO05D001269 9.0e-10 69.3 140 36.4
QL10p004779 Quercus lobata HOM05D005518 ORTHO05D001269 9.0e-10 69.3 313 27.2
Aqoxy386s002 Aquilegia oxysepala HOM05D007286 ORTHO05D008955 1.2e-09 68.9 193 34.2
Duzib084G0018 Durio zibethinus HOM05D005518 ORTHO05D001269 1.2e-09 68.9 132 36.4
ATR0751G048 Amborella trichopoda HOM05D005518 ORTHO05D001269 1.5e-09 68.6 102 44.1
TWI23G0187 Tripterygium wilfordii HOM05D005518 ORTHO05D001269 1.5e-09 68.6 144 35.4
CSS0041106 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 2.6e-09 67.8 452 25.0
Potri.012G094200 Populus trichocarpa HOM05D005518 ORTHO05D001269 3.4e-09 67.4 107 37.4
FvH4_5g07650 Fragaria vesca HOM05D005518 ORTHO05D001269 7.6e-09 66.2 103 38.8
Oeu006376.1 Olea europaea HOM05D005518 ORTHO05D001269 1.0e-08 65.9 283 25.1
arahy.Tifrunner.gnm1.ann1.P5I184 Arachis hypogaea HOM05D001134 ORTHO05D001269 1.3e-08 65.5 105 36.2
arahy.Tifrunner.gnm1.ann1.QFFJ7D Arachis hypogaea HOM05D005518 ORTHO05D001269 1.3e-08 65.5 105 34.3
EL10As4g23466 Beta vulgaris HOM05D005518 ORTHO05D001269 1.3e-08 65.5 520 25.6
Dinv11102 Davidia involucrata HOM05D005518 ORTHO05D001269 1.3e-08 65.5 449 25.2
Gohir.A09G245800 Gossypium hirsutum HOM05D005518 ORTHO05D001269 1.3e-08 65.5 430 27.0
Aqoxy4G02270 Aquilegia oxysepala HOM05D005518 ORTHO05D001269 1.7e-08 65.1 103 39.8
FAN08G0706 Fragaria x ananassa HOM05D005518 ORTHO05D001269 2.2e-08 64.7 122 36.1
RcHm_v2.0_Chr7g0190821 Rosa chinensis HOM05D005518 ORTHO05D001269 2.2e-08 64.7 100 39.0
FAN25G1054 Fragaria x ananassa HOM05D005518 ORTHO05D001269 3.8e-08 63.9 100 39.0
VMungo1309G2768 Vigna mungo HOM05D005518 ORTHO05D001269 3.8e-08 63.9 256 29.7
FAN04G1413 Fragaria x ananassa HOM05D005518 ORTHO05D001269 5.0e-08 63.5 122 35.2
FAN13G1318 Fragaria x ananassa HOM05D005518 ORTHO05D001269 5.0e-08 63.5 122 36.1
THA.LOC104803143 Tarenaya hassleriana HOM05D005518 ORTHO05D001269 5.0e-08 63.5 99 38.4
Cpa.g.sc4.97 Carica papaya HOM05D005518 ORTHO05D001269 6.5e-08 63.2 440 27.0
FAN10G0279 Fragaria x ananassa HOM05D000139 ORTHO05D008955 6.5e-08 63.2 335 28.4
AUR62029840 Chenopodium quinoa HOM05D005518 ORTHO05D001269 8.4e-08 62.8 109 36.7
Actinidia36793 Actinidia chinensis HOM05D005518 ORTHO05D001269 1.9e-07 61.6 279 28.3
Rhsim12G0172400 Rhododendron simsii HOM05D005518 ORTHO05D001269 1.9e-07 61.6 124 36.3
CSS0040133 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 2.5e-07 61.2 102 40.2
Phvul.009G168300 Phaseolus vulgaris HOM05D005518 ORTHO05D001269 4.2e-07 60.5 95 36.8
RcHm_v2.0_Chr1g0380401 Rosa chinensis HOM05D005518 ORTHO05D001269 4.2e-07 60.5 122 34.4
Hund02416 Selenicereus undatus HOM05D005518 ORTHO05D001269 4.2e-07 60.5 265 29.4
Medtr3g075070 Medicago truncatula HOM05D005518 ORTHO05D001269 5.5e-07 60.1 152 28.9
Sabra12G0068800 Salix brachista HOM05D005518 ORTHO05D001269 7.2e-07 59.7 427 26.5
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 1.2e-06 58.9 268 31.3
Gorai.006G270900 Gossypium raimondii HOM05D005518 ORTHO05D001269 1.6e-06 58.5 434 26.3
Lj5C99T12 Lonicera japonica HOM05D005518 ORTHO05D001269 2.1e-06 58.2 141 31.9
Cc04_g10180 Coffea canephora HOM05D005518 ORTHO05D001269 2.7e-06 57.8 227 29.1
Gohir.D09G246400 Gossypium hirsutum HOM05D005518 ORTHO05D001269 2.7e-06 57.8 435 26.7
FAN01G1792 Fragaria x ananassa HOM05D007286 ORTHO05D008955 3.5e-06 57.4 321 26.8
C03p33530 Brassica napus HOM05D005518 ORTHO05D001269 4.6e-06 57.0 100 41.0
BolC3t15674H Brassica oleracea HOM05D005518 ORTHO05D001269 4.6e-06 57.0 100 41.0
Mapoly0040s0042 Marchantia polymorpha HOM05D024742 ORTHO05D030099 4.6e-06 57.0 157 32.5
Sabra15G0113400 Salix brachista HOM05D005518 ORTHO05D001269 4.6e-06 57.0 107 35.5
AT5G50350 Arabidopsis thaliana HOM05D005518 ORTHO05D001269 6.1e-06 56.6 245 31.8
BcaC01g04812 Brassica carinata HOM05D005518 ORTHO05D001269 6.1e-06 56.6 100 41.0
BraA03t11991Z Brassica rapa HOM05D005518 ORTHO05D001269 6.1e-06 56.6 100 40.0
Os06g0609800 Oryza sativa ssp. japonica HOM05D005518 ORTHO05D001269 6.1e-06 56.6 308 28.9
TWI14G0969 Tripterygium wilfordii HOM05D005518 ORTHO05D001269 6.1e-06 56.6 122 32.8


User provided reference genes

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