Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B01124 Erythranthe guttata HOM05D004613 ORTHO05D006095 6.4e-151 537.3 265 100.0
MSTRG.20469 Avicennia marina HOM05D004613 ORTHO05D006095 5.0e-119 431.4 265 80.8
Ciclev10001987m.g Citrus clementina HOM05D004613 ORTHO05D006095 1.7e-98 363.2 253 71.5
CiPaw.08G167100 Carya illinoinensis HOM05D004613 ORTHO05D006095 3.7e-98 362.1 216 78.7
CSS0015750 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 8.3e-98 360.9 218 77.1
Aqoxy2G03209 Aquilegia oxysepala HOM05D004613 ORTHO05D006095 1.1e-97 360.5 223 77.1
QL03p004304 Quercus lobata HOM05D004613 ORTHO05D006095 2.4e-97 359.4 249 72.3
PSO170G6761 Papaver somniferum HOM05D004613 ORTHO05D006095 2.0e-96 356.3 217 77.4
PSO407G0072 Papaver somniferum HOM05D004613 ORTHO05D006095 2.0e-96 356.3 217 77.4
Thecc.05G300000 Theobroma cacao HOM05D004613 ORTHO05D006095 4.5e-96 355.1 217 78.8
Sed0016876 Sechium edule HOM05D004613 ORTHO05D006095 5.9e-96 354.8 220 75.5
Solyc01g098630.3 Solanum lycopersicum HOM05D004613 ORTHO05D006095 7.7e-96 354.4 243 72.8
CsaV3_1G039190 Cucumis sativus L. HOM05D004613 ORTHO05D006095 1.0e-95 354.0 217 77.9
Cfa006537 Carpinus fangiana HOM05D004613 ORTHO05D006095 1.7e-95 353.2 216 77.8
Sopen01g042180 Solanum pennellii HOM05D004613 ORTHO05D006095 2.9e-95 352.4 243 72.4
MELO3C015343.2 Cucumis melo HOM05D004613 ORTHO05D006095 3.8e-95 352.1 217 77.9
MD12G1224400 Malus domestica HOM05D004613 ORTHO05D006095 3.8e-95 352.1 223 75.3
Atru.chr2.494 Acer truncatum HOM05D004613 ORTHO05D006095 1.9e-94 349.7 235 71.1
Haze_04249 Corylus avellana HOM05D004613 ORTHO05D006095 2.5e-94 349.4 218 76.1
vmacro05035 Vaccinium macrocarpon HOM05D004613 ORTHO05D006095 5.5e-94 348.2 225 75.6
ECA232G1001 Erigeron canadensis HOM05D004613 ORTHO05D006095 1.2e-93 347.1 216 77.3
RcHm_v2.0_Chr3g0454031 Rosa chinensis HOM05D004613 ORTHO05D006095 1.2e-93 347.1 219 75.3
CANSAT54G0471 Cannabis sativa HOM05D004613 ORTHO05D006095 1.0e-92 344.0 220 75.5
Eucgr.B02002 Eucalyptus grandis HOM05D004613 ORTHO05D006095 1.2e-91 340.5 216 74.5
Sc09g0003370 Simmondsia chinensis HOM05D004613 ORTHO05D006095 2.0e-91 339.7 219 72.1
HanXRQChr09g0258721 Helianthus annuus HOM05D004613 ORTHO05D006095 9.8e-91 337.4 218 75.2
FvH4_6g05290 Fragaria vesca HOM05D004613 ORTHO05D006095 2.2e-90 336.3 219 73.1
Gorai.004G243600 Gossypium raimondii HOM05D004613 ORTHO05D006095 2.2e-90 336.3 216 74.5
Gohir.D08G229400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 3.7e-90 335.5 216 74.5
Gohir.A08G212400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 4.9e-90 335.1 216 74.1
ATR0626G318 Amborella trichopoda HOM05D004613 ORTHO05D006095 4.1e-89 332.0 217 73.3
PGR083G0604 Punica granatum HOM05D004613 ORTHO05D006095 4.1e-89 332.0 237 67.9
FAN14G3061 Fragaria x ananassa HOM05D004613 ORTHO05D006095 5.4e-89 331.6 219 73.1
Potri.013G026700 Populus trichocarpa HOM05D004613 ORTHO05D006095 5.4e-89 331.6 221 71.5
Aa31LG11G9160 Aethionema arabicum HOM05D004613 ORTHO05D006095 7.0e-89 331.3 226 70.4
BcaNung02466 Brassica carinata HOM05D004613 ORTHO05D006095 1.2e-88 330.5 237 68.4
TWI56G1338 Tripterygium wilfordii HOM05D004613 ORTHO05D006095 1.2e-88 330.5 253 64.8
Lj5g0014952 Lotus japonicus HOM05D004613 ORTHO05D006095 1.6e-88 330.1 216 72.2
Nitab4.5_0015025g0020 Nicotiana tabacum HOM05D004613 ORTHO05D006095 1.6e-88 330.1 220 74.5
AT5G27395 Arabidopsis thaliana HOM05D004613 ORTHO05D006095 2.0e-88 329.7 225 69.3
Nitab4.5_0004940g0150 Nicotiana tabacum HOM05D004613 ORTHO05D006095 5.9e-88 328.2 262 65.6
Phvul.007G182600 Phaseolus vulgaris HOM05D004613 ORTHO05D006095 5.9e-88 328.2 216 71.3
Sp2g20610 Schrenkiella parvula HOM05D004613 ORTHO05D006095 5.9e-88 328.2 223 69.5
AL6G39630 Arabidopsis lyrata HOM05D004613 ORTHO05D006095 1.0e-87 327.4 225 69.3
Thhalv10004565m.g Eutrema salsugineum HOM05D004613 ORTHO05D006095 1.0e-87 327.4 218 70.6
FAN05G3359 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.0e-87 327.4 219 71.7
Carub.0006s2516 Capsella rubella HOM05D004613 ORTHO05D006095 1.3e-87 327.0 225 69.3
CDE12G0359 Ceratophyllum demersum HOM05D004613 ORTHO05D006095 1.7e-87 326.6 205 73.2
FAN05G4103 Fragaria x ananassa HOM05D004613 ORTHO05D006095 2.9e-87 325.9 233 68.2
CARHR185980 Cardamine hirsuta HOM05D004613 ORTHO05D006095 3.9e-87 325.5 225 68.0
FAN02G3501 Fragaria x ananassa HOM05D004613 ORTHO05D006095 3.9e-87 325.5 233 67.8
FAN09G4458 Fragaria x ananassa HOM05D004613 ORTHO05D006095 3.9e-87 325.5 219 70.8
Rhsim07G0179300 Rhododendron simsii HOM05D004613 ORTHO05D006095 3.9e-87 325.5 284 59.2
BcaNung04365 Brassica carinata HOM05D004613 ORTHO05D006095 1.5e-86 323.6 223 69.5
A06p37600 Brassica napus HOM05D004613 ORTHO05D006095 1.5e-86 323.6 223 68.6
Peaxi162Scf00434g00335 Petunia axillaris HOM05D004613 ORTHO05D006095 1.5e-86 323.6 216 73.1
TPR.G2750 Trifolium pratense HOM05D004613 ORTHO05D006095 2.5e-86 322.8 218 72.0
FAN14G4578 Fragaria x ananassa HOM05D004613 ORTHO05D006095 3.3e-86 322.4 238 66.8
GSVIVG01022058001 Vitis vinifera HOM05D004613 ORTHO05D006095 3.3e-86 322.4 197 75.1
BraA06t26679Z Brassica rapa HOM05D004613 ORTHO05D006095 5.6e-86 321.6 225 68.4
arahy.Tifrunner.gnm1.ann1.R33V11 Arachis hypogaea HOM05D004613 ORTHO05D006095 1.2e-85 320.5 217 70.5
C07p40710 Brassica napus HOM05D004613 ORTHO05D006095 1.2e-85 320.5 252 64.3
THA.LOC104818675 Tarenaya hassleriana HOM05D004613 ORTHO05D006095 2.8e-85 319.3 219 69.9
Lsat_1_v5_gn_8_116060 Lactuca sativa HOM05D004613 ORTHO05D006095 4.7e-85 318.5 218 72.5
BolC7t44599H Brassica oleracea HOM05D004613 ORTHO05D006095 6.1e-85 318.2 238 65.1
DCAR_015964 Daucus carota HOM05D004613 ORTHO05D006095 1.4e-84 317.0 219 69.4
EL10Ac4g09300 Beta vulgaris HOM05D004613 ORTHO05D006095 6.8e-84 314.7 216 69.4
VMungo0720G0951 Vigna mungo HOM05D004613 ORTHO05D006095 1.2e-83 313.9 208 71.2
Lalb_Chr02g0148411 Lupinus albus HOM05D004613 ORTHO05D006095 9.8e-83 310.8 219 69.4
Lj9A681T39 Lonicera japonica HOM05D004613 ORTHO05D006095 2.9e-82 309.3 175 83.4
arahy.Tifrunner.gnm1.ann1.LT91QM Arachis hypogaea HOM05D004613 ORTHO05D006095 1.4e-81 307.0 241 63.5
Prupe.6G330700 Prunus persica HOM05D004613 ORTHO05D006095 3.2e-81 305.8 219 68.0
Zm00001eb329390 Zea mays HOM05D004613 ORTHO05D006095 7.8e-80 301.2 227 61.7
HPP92_006941 Vanilla planifolia HOM05D004613 ORTHO05D006095 1.0e-79 300.8 207 69.1
TAR365G0571 Trochodendron aralioides HOM05D004613 ORTHO05D006095 6.6e-79 298.1 215 67.4
Medtr1g082380 Medicago truncatula HOM05D004613 ORTHO05D006095 1.9e-78 296.6 219 64.4
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 1.6e-77 293.5 192 70.8
SGA_v2.0_scaffold199G41179 Striga asiatica HOM05D004613 ORTHO05D006095 1.4e-76 290.4 310 54.5
MBI17_g29025_MAGBIO Magnolia biondii HOM05D004613 ORTHO05D006095 1.5e-75 287.0 192 73.4
PGR083G1611 Punica granatum HOM05D004613 ORTHO05D006095 2.6e-75 286.2 223 63.7
Duzib128G1218 Durio zibethinus HOM05D004613 ORTHO05D006095 9.8e-75 284.3 219 63.9
Dinv40253 Davidia involucrata HOM05D004613 ORTHO05D006095 3.7e-74 282.3 185 73.5
Glyma.20G231400 Glycine max HOM05D004613 ORTHO05D006095 5.4e-73 278.5 190 70.0
SalBow8G2842 Salvia bowleyana HOM05D004613 ORTHO05D006095 5.4e-73 278.5 270 57.8
Nn1g02102 Nelumbo nucifera HOM05D004613 ORTHO05D006095 6.0e-72 275.0 215 64.2
COL.COLO4_13522 Corchorus olitorius HOM05D004613 ORTHO05D006095 3.1e-68 262.7 192 68.2
Hund07039 Selenicereus undatus HOM05D004613 ORTHO05D006095 4.0e-68 262.3 222 61.7
Glyma.10G157300 Glycine max HOM05D004613 ORTHO05D006095 4.1e-65 252.3 216 59.7
SHI18214 Sapria himalayana HOM05D004613 ORTHO05D006095 4.6e-64 248.8 183 65.0
ClCG03G016790 Citrullus lanatus HOM05D000665 ORTHO05D006095 8.1e-61 238.0 388 39.7
PGSC0003DMG400028600 Solanum tuberosum HOM05D004613 ORTHO05D006095 2.3e-55 219.9 172 65.7
Cc02_g32610 Coffea canephora HOM05D004613 ORTHO05D006095 5.1e-55 218.8 174 62.1
Mapoly0007s0105 Marchantia polymorpha HOM05D004613 ORTHO05D006095 1.9e-54 216.9 266 45.9
CAN.G1134.17 Capsicum annuum HOM05D004613 ORTHO05D006095 2.5e-54 216.5 172 64.5
BcaB04g19666 Brassica carinata HOM05D004613 ORTHO05D006095 2.4e-52 209.9 229 52.4
Pp3c24_5170 Physcomitrium patens HOM05D004613 ORTHO05D006095 7.6e-51 204.9 204 47.5
Cpa.g.sc48.6 Carica papaya HOM05D004613 ORTHO05D006095 4.9e-50 202.2 188 54.8
SMO115G0217 Selaginella moellendorffii HOM05D004613 ORTHO05D006095 1.1e-49 201.1 197 50.3
Oeu012099.1 Olea europaea HOM05D004613 ORTHO05D006095 3.3e-46 189.5 133 68.4
SEGI_25140 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 1.6e-45 187.2 156 59.6
Actinidia05726 Actinidia chinensis HOM05D004613 ORTHO05D006095 1.1e-44 184.5 143 62.9
AUR62000861 Chenopodium quinoa HOM05D004613 ORTHO05D006095 3.1e-44 183.0 155 61.9
CBR_g37761 Chara braunii HOM05D004613 ORTHO05D006095 3.2e-41 172.9 205 43.9
unitig_747.g21346 Utricularia gibba HOM05D004613 ORTHO05D006095 6.7e-39 165.2 172 51.2
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 2.1e-37 160.2 227 43.2
MD04G1209800 Malus domestica HOM05D004613 ORTHO05D006095 3.2e-33 146.4 157 50.3
AUR62005113 Chenopodium quinoa HOM05D004613 ORTHO05D006095 7.9e-32 141.7 133 57.1
unitig_747.g21345 Utricularia gibba HOM05D004613 ORTHO05D006095 8.7e-31 138.3 71 88.7
Cc02_g32600 Coffea canephora HOM05D004613 ORTHO05D006095 1.0e-26 124.8 69 79.7
MD04G1209900 Malus domestica HOM05D004613 ORTHO05D006095 1.9e-22 110.5 57 93.0
MCO14G439 Micromonas commoda HOM05D004613 ORTHO05D006095 2.4e-20 103.6 200 31.5
HanXRQChr13g0397031 Helianthus annuus HOM05D004613 ORTHO05D006095 3.1e-20 103.2 113 54.9
AagrBONN_evm.TU.Sc2ySwM_117.373 Anthoceros agrestis HOM05D004613 ORTHO05D006095 2.2e-13 80.5 85 49.4
A09p05250 Brassica napus HOM05D004613 ORTHO05D006095 1.2e-11 74.7 48 75.0
Cre02.g117300 Chlamydomonas reinhardtii HOM05D004613 ORTHO05D006095 7.7e-11 72.0 168 30.4
SEGI_04064 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 2.9e-10 70.1 52 61.5
C09p05710 Brassica napus HOM05D004613 ORTHO05D006095 3.6e-08 63.2 49 57.1
CSS0002320 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.8e-07 60.8 46 60.9
CSS0009134 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.8e-07 60.8 46 60.9
CSS0011661 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.8e-07 60.8 46 60.9
CSS0019992 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.8e-07 60.8 46 60.9
CSS0023662 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.8e-07 60.8 46 60.9
CSS0033019 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.8e-07 60.8 46 60.9
CSS0041443 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.8e-07 60.8 46 60.9
C04p20620 Brassica napus HOM05D000249 ORTHO05D032228 6.7e-07 58.9 29 82.8
BraA06t25731Z Brassica rapa HOM05D030286 ORTHO05D014940 2.0e-06 57.4 67 50.7
BolC2t08054H Brassica oleracea HOM05D004613 ORTHO05D014940 3.3e-06 56.6 30 76.7


User provided reference genes

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