Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 2321.2 1186 100.0
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1829.3 1200 77.8
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1828.1 1199 77.8
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1819.7 1209 77.1
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1676.0 1207 70.6
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1642.5 1210 68.8
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1641.7 1208 69.1
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1625.9 1207 68.4
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1625.9 1210 68.8
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1617.4 1206 68.2
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1610.9 1211 67.4
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1608.6 1203 67.9
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1608.2 1203 67.9
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1603.2 1205 68.2
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1598.6 1211 66.9
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1597.0 1200 67.8
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1594.3 1205 67.3
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1593.9 1201 67.9
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1593.6 1210 67.6
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1592.0 1204 66.9
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1588.5 1186 68.6
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1586.6 1212 67.3
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1586.2 1209 67.5
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1584.3 1209 67.0
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1571.6 1205 66.1
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1569.7 1174 67.7
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1565.8 1200 65.6
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1563.1 1203 66.1
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1563.1 1254 65.6
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1561.2 1201 66.2
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1559.3 1203 66.7
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1559.3 1209 65.9
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1558.9 1202 66.1
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1551.6 1203 66.3
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1546.2 1209 65.8
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1541.9 1207 65.6
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1541.6 1199 65.3
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1539.2 1199 65.2
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1536.2 1199 65.0
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1534.6 1199 64.7
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1533.9 1199 65.0
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1533.9 1205 64.1
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1529.6 1197 64.9
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1527.3 1197 64.8
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1526.5 1163 67.0
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1526.1 1212 65.2
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1526.1 1199 64.4
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1525.0 1209 64.8
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1521.9 1203 64.2
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1521.1 1162 66.3
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1520.0 1201 64.2
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1519.2 1215 64.2
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1518.4 1209 63.9
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1518.1 1200 64.9
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1509.6 1208 63.2
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1508.0 1206 63.8
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1503.8 1201 63.9
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1500.7 1207 63.5
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1495.3 1201 62.9
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1493.0 1201 62.8
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1491.1 1206 62.6
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1489.9 1205 62.8
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1488.8 1200 63.6
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1487.6 1205 62.8
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1487.2 1199 63.3
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1482.6 1212 63.9
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1482.2 1206 63.8
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1479.9 1197 62.8
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1472.6 1207 62.8
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1468.8 1215 64.4
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1466.1 1210 62.2
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1463.7 1196 62.9
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1462.2 1200 61.6
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1457.6 1201 62.0
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1457.2 1200 62.5
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1456.8 1197 62.4
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1455.7 1205 62.2
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1453.0 1204 62.0
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1453.0 1201 61.7
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1449.9 1173 63.3
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1448.7 1207 62.3
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1446.4 1201 61.5
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1445.6 1167 63.3
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1443.7 1176 62.2
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1430.6 1175 62.0
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1424.8 1115 64.2
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1417.5 1195 60.7
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1407.1 1190 61.0
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1385.9 981 71.7
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1370.5 1206 59.1
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1368.2 1205 60.9
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1352.8 1200 59.0
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1344.3 1295 57.6
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1327.8 1136 60.0
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1322.4 1015 65.4
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1305.8 1205 56.8
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1295.0 1206 57.5
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1292.7 1179 57.4
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1290.4 1207 54.5
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1290.0 1144 58.8
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1150.6 1051 57.7
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 0.0e+00 1113.6 811 70.0
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1097.0 891 62.7
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 0.0e+00 1080.1 964 59.9
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 1.2e-286 990.3 836 61.2
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 4.7e-286 988.4 1143 49.2
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 3.2e-258 896.0 1236 41.2
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 7.1e-258 894.8 1239 41.2
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 8.1e-254 881.3 1205 42.4
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 2.3e-240 836.6 638 67.2
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 1.5e-239 833.9 1180 42.7
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 9.1e-229 798.1 1170 41.7
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 9.1e-229 798.1 1156 41.9
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 5.5e-226 788.9 1156 41.5
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 2.3e-224 783.5 1159 39.0
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 2.8e-214 750.0 795 51.4
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 6.8e-208 728.8 1056 42.4
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 1.0e-200 704.9 1216 35.8
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 2.8e-198 696.8 600 62.5
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.1e-189 668.3 628 55.1
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.8e-176 624.4 571 57.1
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.6e-164 584.7 540 56.3
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 8.1e-153 545.8 471 63.1
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.2e-148 531.9 489 55.8
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 9.0e-144 515.8 399 64.7
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 2.0e-111 408.3 321 65.1
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 3.6e-100 370.9 297 64.3
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 1.4e-80 305.8 1351 24.1
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 1.8e-75 288.9 210 67.1
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 4.4e-74 284.3 267 50.9
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 8.9e-67 260.0 212 62.7
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 4.7e-60 237.7 185 66.5
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 2.6e-58 231.9 479 32.8
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 2.2e-49 202.2 487 30.2
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 2.7e-47 195.3 217 50.7
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 5.2e-43 181.0 109 81.7
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 2.8e-36 158.7 1149 20.7
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 1.9e-24 119.4 97 66.0
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 3.4e-18 98.6 73 67.1
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 4.6e-15 88.2 344 25.3
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 7.9e-15 87.4 75 60.0
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 1.4e-11 76.6 74 56.8
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 1.4e-11 76.6 72 52.8
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 5.3e-11 74.7 71 50.7
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 1.1e-08 67.0 55 60.0
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 1.1e-08 67.0 55 60.0
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.9e-08 66.2 67 50.7
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 3.2e-08 65.5 49 71.4
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 3.2e-08 65.5 49 71.4
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 1.6e-07 63.2 63 55.6
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 2.7e-07 62.4 115 31.3
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 4.6e-07 61.6 63 54.0
CAN.G473.63 Capsicum annuum HOM05D004384 ORTHO05D115006 4.6e-07 61.6 36 80.6
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 3.0e-06 58.9 55 56.4


User provided reference genes

Program Settings