Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 8.4e-157 557.0 282 100.0
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 1.4e-98 363.6 275 63.6
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 1.1e-95 354.0 286 62.9
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 1.4e-95 353.6 287 64.5
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 1.5e-92 343.6 286 62.9
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 2.1e-91 339.7 276 61.6
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 2.1e-91 339.7 276 61.6
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 2.1e-91 339.7 274 61.7
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 2.1e-91 339.7 274 60.9
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 2.1e-91 339.7 273 62.3
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 6.1e-91 338.2 288 60.1
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 1.4e-90 337.0 276 60.5
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 2.3e-90 336.3 282 59.9
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 2.3e-90 336.3 274 60.9
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 2.3e-90 336.3 274 60.9
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.2e-89 334.0 274 60.6
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 1.5e-89 333.6 276 61.6
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 2.0e-89 333.2 274 60.2
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 2.0e-89 333.2 273 59.0
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 2.6e-89 332.8 274 60.2
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 2.6e-89 332.8 271 60.5
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 5.7e-89 331.6 259 61.4
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 9.8e-89 330.9 273 61.9
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 9.8e-89 330.9 279 58.4
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 1.3e-88 330.5 283 59.7
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 1.7e-88 330.1 267 63.3
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 3.7e-88 328.9 276 59.4
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 4.8e-88 328.6 263 62.0
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 1.4e-87 327.0 263 61.6
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 3.1e-87 325.9 277 55.6
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 3.1e-87 325.9 268 59.0
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 4.1e-87 325.5 279 57.3
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 4.1e-87 325.5 272 59.6
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 7.0e-87 324.7 278 57.9
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 7.0e-87 324.7 258 60.1
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 7.0e-87 324.7 274 58.0
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 1.2e-86 323.9 284 58.1
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 2.0e-86 323.2 283 55.8
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 2.7e-86 322.8 273 57.9
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 3.5e-86 322.4 276 60.1
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 4.5e-86 322.0 258 59.3
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 1.0e-85 320.9 251 62.9
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 1.0e-85 320.9 270 60.4
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 1.7e-85 320.1 274 58.0
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 1.7e-85 320.1 277 57.0
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 1.7e-85 320.1 275 57.5
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 2.2e-85 319.7 260 60.8
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 3.8e-85 318.9 265 58.5
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 5.0e-85 318.5 271 58.7
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 6.5e-85 318.2 278 56.5
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 8.5e-85 317.8 278 57.6
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 1.5e-84 317.0 284 55.6
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 1.9e-84 316.6 264 56.8
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 3.2e-84 315.8 256 59.8
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 3.2e-84 315.8 279 55.9
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 5.5e-84 315.1 273 57.9
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 5.5e-84 315.1 258 58.1
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 7.2e-84 314.7 273 57.5
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 1.2e-83 313.9 243 64.2
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 1.6e-83 313.5 280 56.1
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 1.6e-83 313.5 274 55.5
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 1.6e-83 313.5 248 59.3
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 4.7e-83 312.0 273 58.2
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 1.8e-82 310.1 268 56.0
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 2.3e-82 309.7 247 61.1
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 2.3e-82 309.7 286 53.1
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 2.3e-82 309.7 278 56.1
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 6.8e-82 308.1 273 56.0
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 1.2e-81 307.4 275 55.3
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 4.4e-81 305.4 274 54.0
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 9.8e-81 304.3 265 57.0
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 1.3e-80 303.9 276 54.7
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 3.7e-80 302.4 278 56.8
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 1.1e-79 300.8 280 55.4
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 1.1e-79 300.8 275 56.0
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 1.4e-79 300.4 276 54.0
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 4.1e-79 298.9 276 53.6
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 9.1e-79 297.7 267 55.4
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 2.7e-78 296.2 282 52.1
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 3.5e-78 295.8 270 54.4
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.0e-77 294.3 257 55.3
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 1.0e-77 294.3 261 55.2
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 1.7e-77 293.5 264 56.4
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 8.6e-77 291.2 300 50.0
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 3.3e-76 289.3 257 54.5
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 3.6e-75 285.8 251 58.2
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 6.1e-75 285.0 266 53.4
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 5.2e-74 282.0 270 57.4
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 6.8e-74 281.6 266 53.0
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 6.4e-72 275.0 270 53.7
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 2.8e-67 259.6 211 57.8
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 1.5e-65 253.8 261 48.7
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 4.1e-63 245.7 235 51.5
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 6.0e-62 241.9 269 44.2
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 3.1e-58 229.6 271 44.3
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 1.3e-56 224.2 273 42.9
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 1.1e-55 221.1 289 42.9
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 1.1e-55 221.1 289 42.9
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 1.4e-55 220.7 292 42.8
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 2.4e-55 219.9 272 43.4
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 4.1e-55 219.2 278 43.2
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 5.4e-55 218.8 296 42.2
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 7.1e-55 218.4 279 43.4
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 9.2e-55 218.0 289 42.2
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 1.2e-54 217.6 216 53.2
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 7.8e-54 214.9 289 41.9
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 3.9e-53 212.6 289 40.1
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 3.9e-53 212.6 297 42.1
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 6.6e-53 211.8 288 40.3
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 6.6e-53 211.8 292 40.8
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 1.5e-52 210.7 298 41.3
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 1.9e-52 210.3 292 40.4
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 9.5e-52 208.0 287 41.1
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 2.8e-51 206.5 272 43.8
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 2.8e-51 206.5 241 44.0
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 3.0e-45 186.4 174 49.4
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 4.3e-44 182.6 248 39.5
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 4.7e-43 179.1 209 46.4
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 1.8e-42 177.2 222 42.3
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 3.1e-42 176.4 251 39.4
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 1.5e-36 157.5 227 37.9
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 1.7e-32 144.1 204 39.2
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 3.8e-32 142.9 204 40.2
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 6.4e-32 142.1 204 39.2
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 8.4e-32 141.7 178 41.0
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 1.4e-31 141.0 201 43.8
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 1.2e-30 137.9 255 35.7
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 1.2e-30 137.9 174 41.4
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 2.1e-30 137.1 176 43.2
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 1.5e-28 131.0 174 40.8
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 1.5e-28 131.0 226 35.4
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 2.5e-28 130.2 253 34.0
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 5.6e-28 129.0 139 43.2
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 4.0e-26 122.9 142 44.4
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 5.8e-25 119.0 240 32.9
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 2.2e-24 117.1 92 59.8
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 2.2e-24 117.1 156 41.7
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 8.4e-24 115.2 143 44.1
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 1.1e-20 104.8 198 33.8
MCO15G505 Micromonas commoda HOM05D004840 ORTHO05D005751 1.9e-20 104.0 156 35.3
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 2.6e-17 93.6 174 33.3
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 2.6e-17 93.6 174 33.3
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 4.2e-15 86.3 78 51.3
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 1.2e-14 84.7 154 38.3
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 6.7e-13 79.0 65 53.8
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 6.7e-13 79.0 65 53.8
Duzib128G0694 Durio zibethinus HOM05D004840 ORTHO05D005751 2.8e-11 73.6 69 50.7
Nitab4.5_0007800g0020 Nicotiana tabacum HOM05D004840 ORTHO05D005751 3.7e-11 73.2 90 42.2


User provided reference genes

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