Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 3.0e-35 151.4 79 100.0
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 1.9e-29 132.1 79 86.1
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 4.6e-28 127.5 79 81.0
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.5e-26 121.7 79 79.7
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.5e-26 121.7 79 79.7
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 4.3e-26 120.9 79 78.5
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 5.6e-26 120.6 79 78.5
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 7.3e-26 120.2 79 77.2
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 7.3e-26 120.2 79 77.2
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 3.6e-25 117.9 79 75.9
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 8.1e-25 116.7 79 75.9
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 3.1e-24 114.8 69 82.6
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 4.0e-24 114.4 69 81.2
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 4.4e-23 110.9 80 76.2
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 4.4e-23 110.9 80 76.2
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 9.9e-23 109.8 80 76.2
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 9.3e-21 103.2 79 73.4
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 9.3e-21 103.2 79 70.9
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 1.2e-20 102.8 79 74.7
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 2.7e-20 101.7 78 64.1
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 3.5e-20 101.3 80 66.2
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 6.0e-20 100.5 79 70.9
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 6.0e-20 100.5 79 70.9
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 7.8e-20 100.1 79 70.9
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 7.8e-20 100.1 79 70.9
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 7.8e-20 100.1 80 65.0
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 1.0e-19 99.8 79 70.9
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.0e-19 99.8 79 70.9
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 1.0e-19 99.8 79 68.4
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 1.0e-19 99.8 79 69.6
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 1.3e-19 99.4 79 73.4
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 1.7e-19 99.0 79 72.2
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 1.7e-19 99.0 79 69.6
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 2.3e-19 98.6 79 73.4
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 2.3e-19 98.6 79 70.9
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 2.3e-19 98.6 79 73.4
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 3.9e-19 97.8 79 68.4
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 3.9e-19 97.8 79 69.6
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 3.9e-19 97.8 79 67.1
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 3.9e-19 97.8 79 68.4
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 5.1e-19 97.4 79 70.9
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 5.1e-19 97.4 79 62.0
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 8.7e-19 96.7 79 68.4
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 8.7e-19 96.7 79 72.2
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 1.1e-18 96.3 77 66.2
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 1.5e-18 95.9 79 67.1
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.9e-18 95.5 79 68.4
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 2.5e-18 95.1 79 69.6
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 3.3e-18 94.7 79 68.4
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 3.3e-18 94.7 81 61.7
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 5.6e-18 94.0 79 64.6
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 5.6e-18 94.0 79 65.8
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 7.3e-18 93.6 79 69.6
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 7.3e-18 93.6 79 69.6
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 7.3e-18 93.6 77 68.8
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 9.6e-18 93.2 79 69.6
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 9.6e-18 93.2 77 63.6
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 9.6e-18 93.2 79 68.4
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 1.3e-17 92.8 79 67.1
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 1.3e-17 92.8 77 63.6
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 1.3e-17 92.8 78 64.1
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 1.6e-17 92.4 79 68.4
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 3.6e-17 91.3 79 65.8
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 4.8e-17 90.9 79 65.8
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 8.1e-17 90.1 79 65.8
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 1.1e-16 89.7 82 58.5
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 1.1e-16 89.7 49 83.7
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 1.1e-16 89.7 79 64.6
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 1.4e-16 89.4 81 59.3
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 1.8e-16 89.0 79 64.6
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 1.8e-16 89.0 79 64.6
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 3.1e-16 88.2 79 60.8
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 4.0e-16 87.8 79 64.6
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 4.0e-16 87.8 79 62.0
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 4.0e-16 87.8 79 63.3
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 5.3e-16 87.4 79 62.0
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 6.9e-16 87.0 77 62.3
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 6.9e-16 87.0 77 63.6
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 9.0e-16 86.7 78 60.3
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 1.2e-15 86.3 79 60.8
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 1.5e-15 85.9 77 62.3
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.5e-15 85.9 79 57.0
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 1.5e-15 85.9 79 60.8
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 1.5e-15 85.9 60 70.0
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 2.0e-15 85.5 80 60.0
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 3.4e-15 84.7 80 62.5
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 3.4e-15 84.7 64 60.9
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 4.5e-15 84.3 79 57.0
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 5.8e-15 84.0 79 58.2
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 5.8e-15 84.0 47 76.6
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 9.9e-15 83.2 80 57.5
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.7e-14 82.4 77 54.5
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 1.7e-14 82.4 47 74.5
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 2.2e-14 82.0 58 67.2
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 2.2e-14 82.0 69 53.6
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 2.9e-14 81.6 75 54.7
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 2.9e-14 81.6 47 74.5
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 2.9e-14 81.6 62 61.3
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 2.9e-14 81.6 62 61.3
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 2.9e-14 81.6 62 61.3
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 2.9e-14 81.6 62 61.3
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 2.9e-14 81.6 62 61.3
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 2.9e-14 81.6 62 61.3
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 2.9e-14 81.6 81 56.8
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 2.9e-14 81.6 47 76.6
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 3.8e-14 81.3 77 57.1
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 3.8e-14 81.3 71 50.7
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 4.9e-14 80.9 70 57.1
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 4.9e-14 80.9 59 66.1
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 4.9e-14 80.9 47 74.5
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 4.9e-14 80.9 59 66.1
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 4.9e-14 80.9 67 70.1
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 6.4e-14 80.5 68 58.8
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 6.4e-14 80.5 80 55.0
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 6.4e-14 80.5 79 57.0
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.1e-13 79.7 83 57.8
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 1.1e-13 79.7 44 79.5
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 1.4e-13 79.3 63 60.3
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 1.4e-13 79.3 71 56.3
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.4e-13 79.3 45 77.8
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 2.4e-13 78.6 47 72.3
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 2.4e-13 78.6 79 57.0
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 3.2e-13 78.2 47 74.5
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 3.2e-13 78.2 47 72.3
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 3.2e-13 78.2 73 53.4
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 5.4e-13 77.4 73 53.4
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 1.6e-12 75.9 78 57.7
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 2.1e-12 75.5 76 51.3
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 4.6e-12 74.3 79 51.9
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 1.0e-11 73.2 79 50.6
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 1.0e-11 73.2 47 66.0
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 1.8e-11 72.4 48 64.6
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 2.3e-11 72.0 47 70.2
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 3.0e-11 71.6 69 62.3
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 3.9e-11 71.2 44 70.5
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 3.9e-11 71.2 44 70.5
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 3.9e-11 71.2 79 50.6
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 3.9e-11 71.2 44 70.5
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 5.1e-11 70.9 44 68.2
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 5.1e-11 70.9 44 68.2
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 5.1e-11 70.9 44 68.2
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 5.1e-11 70.9 44 68.2
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 5.1e-11 70.9 44 68.2
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 6.7e-11 70.5 79 50.6
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 6.7e-11 70.5 69 60.9
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 1.1e-10 69.7 45 62.2
Lalb_Chr09g0331931 Lupinus albus HOM05D004803 ORTHO05D005653 2.5e-10 68.6 61 65.6
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 2.8e-09 65.1 62 56.5
Nn8g40643 Nelumbo nucifera HOM05D004803 ORTHO05D005653 4.8e-09 64.3 35 85.7
Atru.chr9.1510 Acer truncatum HOM05D004803 ORTHO05D005653 3.1e-08 61.6 60 61.7
Lj4g0006469 Lotus japonicus HOM05D004803 ORTHO05D005653 2.0e-07 58.9 62 58.1
MBI16_g37211_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 6.4e-06 53.9 44 65.9


User provided reference genes

Program Settings