Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 1.6e-83 312.8 168 100.0
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 2.5e-47 192.6 145 71.0
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 5.5e-47 191.4 150 67.3
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 9.7e-44 180.6 152 63.8
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 1.3e-43 180.3 150 66.0
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 2.2e-43 179.5 150 65.3
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 6.3e-43 177.9 150 66.0
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 1.4e-42 176.8 150 65.3
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 1.8e-42 176.4 151 61.6
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 2.4e-42 176.0 151 61.6
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 4.1e-42 175.3 150 65.3
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 5.3e-42 174.9 132 70.5
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 7.0e-42 174.5 151 61.6
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 1.2e-41 173.7 150 62.0
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.6e-41 173.3 150 64.0
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 1.6e-41 173.3 155 58.1
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 2.0e-41 172.9 150 63.3
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 2.0e-41 172.9 150 62.7
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 2.0e-41 172.9 150 63.3
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 2.6e-41 172.6 150 62.0
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 2.6e-41 172.6 152 61.2
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 2.6e-41 172.6 150 63.3
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 3.5e-41 172.2 150 64.7
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 4.5e-41 171.8 149 60.4
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 5.9e-41 171.4 150 63.3
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 5.9e-41 171.4 150 63.3
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 5.9e-41 171.4 150 63.3
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 1.7e-40 169.9 150 62.0
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 3.8e-40 168.7 150 58.7
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 6.5e-40 167.9 150 60.7
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 6.5e-40 167.9 150 61.3
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 8.5e-40 167.5 150 62.0
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 1.1e-39 167.2 148 60.1
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 1.5e-39 166.8 150 60.0
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 2.5e-39 166.0 150 60.0
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 7.2e-39 164.5 150 59.3
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 9.4e-39 164.1 150 60.7
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 1.2e-38 163.7 137 62.0
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 1.2e-38 163.7 150 60.0
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 1.6e-38 163.3 150 60.0
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 1.6e-38 163.3 150 59.3
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 2.1e-38 162.9 150 58.7
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 4.7e-38 161.8 142 59.9
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 6.1e-38 161.4 150 60.0
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 8.0e-38 161.0 150 59.3
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.8e-37 159.8 142 59.2
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 3.0e-37 159.1 152 57.2
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 4.0e-37 158.7 150 56.7
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 5.2e-37 158.3 150 58.0
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 6.7e-37 157.9 146 56.8
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 8.8e-37 157.5 141 59.6
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 1.1e-36 157.1 150 59.3
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 1.5e-36 156.8 150 57.3
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 1.5e-36 156.8 150 58.0
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 2.6e-36 156.0 150 58.7
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 2.6e-36 156.0 149 57.7
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 7.5e-36 154.5 150 56.0
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 4.8e-35 151.8 141 58.2
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 6.3e-35 151.4 150 55.3
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 4.1e-34 148.7 150 56.0
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 7.0e-34 147.9 150 56.0
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 2.0e-33 146.4 150 56.7
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 2.7e-33 146.0 147 55.1
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 3.8e-32 142.1 146 50.0
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 3.8e-32 142.1 119 61.3
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 5.0e-32 141.7 141 55.3
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.9e-31 139.8 150 54.7
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 3.2e-31 139.0 150 54.7
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 4.2e-31 138.7 150 52.0
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 4.2e-31 138.7 150 52.0
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 5.5e-31 138.3 119 61.3
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 1.8e-29 133.3 150 52.7
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 4.0e-29 132.1 151 56.3
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 5.2e-29 131.7 151 52.3
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.5e-28 130.2 151 51.7
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 1.5e-28 130.2 151 51.7
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 2.0e-28 129.8 137 56.2
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 2.6e-28 129.4 122 61.5
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 2.6e-28 129.4 150 51.3
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 2.6e-28 129.4 150 52.0
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 3.4e-28 129.0 125 53.6
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 4.4e-28 128.6 121 60.3
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 4.4e-28 128.6 137 51.1
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 9.8e-28 127.5 121 60.3
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 9.8e-28 127.5 121 60.3
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.3e-27 127.1 129 54.3
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 1.7e-27 126.7 150 51.3
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 2.8e-27 125.9 150 52.0
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 2.8e-27 125.9 118 55.1
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 4.8e-27 125.2 150 48.0
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 8.3e-27 124.4 150 50.0
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 1.1e-26 124.0 150 51.3
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 1.1e-26 124.0 118 55.1
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 1.1e-26 124.0 154 46.1
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 1.4e-26 123.6 150 51.3
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 1.4e-26 123.6 150 51.3
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 1.4e-26 123.6 150 51.3
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 1.8e-26 123.2 119 56.3
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 1.8e-26 123.2 150 52.0
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 2.4e-26 122.9 150 50.7
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 3.1e-26 122.5 112 59.8
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 4.1e-26 122.1 112 55.4
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 5.4e-26 121.7 150 50.7
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 5.4e-26 121.7 150 50.7
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 1.2e-25 120.6 150 50.7
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 1.6e-25 120.2 150 50.0
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 2.0e-25 119.8 112 58.9
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 2.7e-25 119.4 150 50.7
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 3.5e-25 119.0 121 55.4
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 1.0e-24 117.5 151 52.3
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 1.3e-24 117.1 111 55.0
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 6.5e-24 114.8 151 47.7
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 2.5e-23 112.8 151 47.7
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 4.2e-23 112.1 145 43.4
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 2.1e-22 109.8 157 39.5
Oeu025682.1 Olea europaea HOM05D005880 ORTHO05D007114 9.8e-20 100.9 92 62.0
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 6.3e-19 98.2 151 42.4
SalBow1G5664 Salvia bowleyana HOM05D005880 ORTHO05D007114 2.4e-18 96.3 92 59.8
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.0e-17 93.2 78 61.5
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 1.0e-16 90.9 89 55.1
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 2.1e-14 83.2 101 45.5
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 2.8e-14 82.8 89 49.4
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 3.6e-14 82.4 121 43.0
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.4e-13 80.5 101 44.6
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 1.3e-11 73.9 77 57.1
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 2.9e-11 72.8 61 60.7
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 4.9e-11 72.0 76 53.9
Oeu000185.1 Olea europaea HOM05D005880 ORTHO05D007114 7.0e-10 68.2 92 48.9
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 5.9e-09 65.1 56 60.7
Gohir.A06G179950 Gossypium hirsutum HOM05D005880 ORTHO05D007114 5.0e-08 62.0 69 46.4
Gohir.D04G172050 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.6e-06 57.0 98 42.9
Gorai.012G161100 Gossypium raimondii HOM05D005880 ORTHO05D007114 1.6e-06 57.0 98 42.9
HPP92_024638 Vanilla planifolia HOM05D005880 ORTHO05D007114 4.7e-06 55.5 135 34.1


User provided reference genes

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