Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 1.2e-47 193.0 104 100.0
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 3.4e-31 138.3 104 69.2
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 3.0e-27 125.2 104 68.3
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 4.1e-24 114.8 80 72.5
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 5.3e-24 114.4 105 62.9
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 1.5e-23 112.8 108 63.0
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 4.5e-23 111.3 87 69.0
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 5.8e-23 110.9 106 60.4
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 1.0e-22 110.2 96 66.7
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.7e-22 109.4 106 60.4
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 2.2e-22 109.0 95 61.1
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 5.0e-22 107.8 105 61.9
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 5.0e-22 107.8 90 68.9
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 1.4e-21 106.3 107 57.0
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 1.9e-21 105.9 107 59.8
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 1.9e-21 105.9 94 64.9
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 2.5e-21 105.5 105 60.0
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 3.2e-21 105.1 105 60.0
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 5.5e-21 104.4 97 58.8
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 1.2e-20 103.2 93 62.4
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 1.6e-20 102.8 97 63.9
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 2.7e-20 102.1 101 57.4
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 4.6e-20 101.3 97 61.9
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 6.1e-20 100.9 108 58.3
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 6.1e-20 100.9 106 53.8
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 6.1e-20 100.9 108 57.4
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.3e-19 99.8 105 58.1
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 1.3e-19 99.8 105 58.1
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.8e-19 99.4 99 57.6
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 2.3e-19 99.0 83 61.4
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 2.3e-19 99.0 105 57.1
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 2.3e-19 99.0 103 58.3
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 5.1e-19 97.8 93 60.2
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 5.1e-19 97.8 107 57.9
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 5.1e-19 97.8 106 54.7
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 6.7e-19 97.4 106 54.7
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 6.7e-19 97.4 97 59.8
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 1.1e-18 96.7 106 53.8
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 1.1e-18 96.7 95 57.9
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 1.1e-18 96.7 87 59.8
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 1.1e-18 96.7 92 58.7
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 1.5e-18 96.3 79 67.1
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 1.5e-18 96.3 106 54.7
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 1.9e-18 95.9 95 60.0
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 1.9e-18 95.9 107 54.2
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 2.5e-18 95.5 96 57.3
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 2.5e-18 95.5 106 53.8
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 2.5e-18 95.5 97 58.8
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 2.5e-18 95.5 106 51.9
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 2.5e-18 95.5 82 62.2
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 3.3e-18 95.1 106 52.8
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 4.3e-18 94.7 106 51.9
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 4.3e-18 94.7 106 51.9
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 4.3e-18 94.7 105 57.1
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 4.3e-18 94.7 92 58.7
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 5.7e-18 94.4 103 55.3
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 5.7e-18 94.4 111 55.0
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 7.4e-18 94.0 107 53.3
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 7.4e-18 94.0 105 55.2
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 1.6e-17 92.8 102 54.9
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 1.6e-17 92.8 90 57.8
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 1.6e-17 92.8 106 50.9
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 2.2e-17 92.4 109 56.9
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 2.8e-17 92.0 96 58.3
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 6.3e-17 90.9 81 61.7
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 6.3e-17 90.9 105 54.3
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 8.2e-17 90.5 97 57.7
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 8.2e-17 90.5 80 63.8
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 8.2e-17 90.5 90 56.7
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 8.2e-17 90.5 103 50.5
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 1.1e-16 90.1 108 53.7
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 1.1e-16 90.1 71 67.6
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 1.1e-16 90.1 71 67.6
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 1.1e-16 90.1 91 54.9
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 1.1e-16 90.1 91 54.9
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 1.4e-16 89.7 103 55.3
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 1.8e-16 89.4 86 59.3
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 2.4e-16 89.0 108 53.7
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 2.4e-16 89.0 92 57.6
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 3.1e-16 88.6 102 53.9
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 4.1e-16 88.2 107 46.7
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 5.3e-16 87.8 95 53.7
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 5.3e-16 87.8 107 51.4
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 5.3e-16 87.8 96 52.1
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 5.3e-16 87.8 92 53.3
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 6.9e-16 87.4 101 56.4
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 9.0e-16 87.0 83 56.6
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 9.0e-16 87.0 87 55.2
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 9.0e-16 87.0 98 55.1
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 1.5e-15 86.3 88 54.5
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 2.0e-15 85.9 92 52.2
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 2.0e-15 85.9 92 52.2
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 3.4e-15 85.1 86 52.3
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 3.4e-15 85.1 86 58.1
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 3.4e-15 85.1 82 59.8
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 4.5e-15 84.7 89 56.2
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 5.9e-15 84.3 104 51.0
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 5.9e-15 84.3 94 56.4
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 5.9e-15 84.3 93 52.7
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 7.7e-15 84.0 104 48.1
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 7.7e-15 84.0 98 53.1
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 7.7e-15 84.0 99 46.5
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 1.0e-14 83.6 105 51.4
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 1.0e-14 83.6 90 53.3
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 1.0e-14 83.6 86 55.8
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 1.7e-14 82.8 72 62.5
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 2.2e-14 82.4 80 60.0
Cc02_g23340 Coffea canephora HOM05D004289 ORTHO05D005141 2.2e-14 82.4 107 52.3
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 2.9e-14 82.0 72 59.7
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 3.8e-14 81.6 102 47.1
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 3.8e-14 81.6 94 48.9
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 5.0e-14 81.3 78 64.1
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 1.1e-13 80.1 56 75.0
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 1.1e-13 80.1 93 50.5
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 3.2e-13 78.6 81 51.9
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 5.5e-13 77.8 92 52.2
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 5.5e-13 77.8 104 52.9
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 9.4e-13 77.0 97 50.5
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 9.4e-13 77.0 88 51.1
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 1.2e-12 76.6 104 46.2
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 2.1e-12 75.9 93 49.5
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 2.7e-12 75.5 71 60.6
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 2.7e-12 75.5 90 48.9
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 6.1e-12 74.3 40 90.0
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 7.9e-12 73.9 50 74.0
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 1.0e-11 73.6 106 42.5
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 1.0e-11 73.6 88 53.4
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 1.0e-11 73.6 92 50.0
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.4e-11 73.2 104 44.2
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.4e-11 73.2 104 44.2
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 1.4e-11 73.2 104 44.2
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 1.8e-11 72.8 64 57.8
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 1.8e-11 72.8 69 59.4
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 2.3e-11 72.4 68 58.8
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 2.3e-11 72.4 93 45.2
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 3.0e-11 72.0 87 51.7
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 3.9e-11 71.6 72 59.7
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 3.9e-11 71.6 60 66.7
Glyma.16G002000 Glycine max HOM05D004289 ORTHO05D005141 5.1e-11 71.2 93 48.4
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 5.1e-11 71.2 85 48.2
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 6.7e-11 70.9 69 56.5
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 8.8e-11 70.5 94 45.7
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 8.8e-11 70.5 87 46.0
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 2.0e-10 69.3 101 45.5
Glyma.12G165600 Glycine max HOM05D004289 ORTHO05D005141 7.4e-10 67.4 106 48.1
Lalb_Chr15g0090801 Lupinus albus HOM05D004289 ORTHO05D005141 1.7e-09 66.2 92 45.7
Lalb_Chr18g0061091 Lupinus albus HOM05D004289 ORTHO05D005141 2.2e-09 65.9 92 44.6
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 3.7e-09 65.1 76 46.1
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 6.3e-09 64.3 106 39.6
Actinidia01613 Actinidia chinensis HOM05D000487 ORTHO05D000405 4.1e-08 61.6 85 49.4
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 9.1e-08 60.5 61 54.1
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.2e-07 60.1 52 65.4
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 2.0e-07 59.3 69 50.7
Sopen01g045750 Solanum pennellii HOM05D004289 ORTHO05D005141 2.0e-07 59.3 92 44.6
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 2.6e-07 58.9 69 50.7
Peaxi162Scf00011g00155 Petunia axillaris HOM05D004289 ORTHO05D005141 2.6e-07 58.9 83 45.8
arahy.Tifrunner.gnm1.ann1.2Z03QX Arachis hypogaea HOM05D004289 ORTHO05D005141 5.9e-07 57.8 89 41.6
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 7.7e-07 57.4 64 54.7
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 1.3e-06 56.6 69 43.5
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 1.7e-06 56.2 69 42.0
DCAR_001703 Daucus carota HOM05D004289 ORTHO05D005141 1.7e-06 56.2 104 41.3
PGSC0003DMG400024883 Solanum tuberosum HOM05D004289 ORTHO05D005141 1.7e-06 56.2 81 45.7
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 2.9e-06 55.5 73 43.8
Nitab4.5_0000787g0030 Nicotiana tabacum HOM05D004289 ORTHO05D005141 2.9e-06 55.5 83 44.6
SalBow6G5095 Salvia bowleyana HOM05D004289 ORTHO05D005141 2.9e-06 55.5 87 42.5
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 2.9e-06 55.5 69 47.8
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 3.8e-06 55.1 65 46.2
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 3.8e-06 55.1 72 43.1
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 3.8e-06 55.1 72 43.1
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 5.0e-06 54.7 65 44.6
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 5.0e-06 54.7 63 47.6
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 6.5e-06 54.3 65 46.2
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 6.5e-06 54.3 63 46.0
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 6.5e-06 54.3 64 43.8
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 8.5e-06 53.9 59 49.2
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 8.5e-06 53.9 98 37.8
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 8.5e-06 53.9 57 54.4
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 8.5e-06 53.9 65 46.2


User provided reference genes

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