Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B00460 Erythranthe guttata HOM05D001568 ORTHO05D008804 7.5e-156 553.9 297 100.0
SalBow6G4520 Salvia bowleyana HOM05D001568 ORTHO05D008804 9.2e-122 440.7 324 71.9
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 6.6e-120 434.5 319 72.1
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 3.3e-111 405.6 292 71.6
Rhsim05G0092700 Rhododendron simsii HOM05D001568 ORTHO05D008804 2.1e-110 402.9 294 70.7
CANSAT25G3386 Cannabis sativa HOM05D001568 ORTHO05D008804 4.7e-110 401.7 292 71.9
Hma1.2p1_0661F.1_g198113 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 1.4e-109 400.2 288 70.5
Atru.chr5.2305 Acer truncatum HOM05D001568 ORTHO05D008804 3.1e-109 399.1 289 70.9
unitig_744.g24207 Utricularia gibba HOM05D001568 ORTHO05D008804 4.0e-109 398.7 292 69.2
TAR628G1281 Trochodendron aralioides HOM05D001568 ORTHO05D008804 6.8e-109 397.9 253 76.3
Solyc01g106880.3 Solanum lycopersicum HOM05D001568 ORTHO05D008804 2.0e-108 396.4 293 70.6
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 3.4e-108 395.6 286 70.6
Cc00_g17990 Coffea canephora HOM05D001568 ORTHO05D008804 9.9e-108 394.0 301 69.1
HanXRQChr03g0072921 Helianthus annuus HOM05D001568 ORTHO05D008804 1.7e-107 393.3 291 70.1
EL10Ac9g22185 Beta vulgaris HOM05D001568 ORTHO05D008804 2.2e-107 392.9 271 72.7
Sopen01g049160 Solanum pennellii HOM05D001568 ORTHO05D008804 2.2e-107 392.9 293 70.3
CiPaw.05G020500 Carya illinoinensis HOM05D001568 ORTHO05D008804 2.9e-107 392.5 298 69.5
Manes.07G057400 Manihot esculenta HOM05D001568 ORTHO05D008804 3.8e-107 392.1 286 71.3
CSS0011887 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D008804 1.4e-106 390.2 257 75.9
Nitab4.5_0001099g0070 Nicotiana tabacum HOM05D001568 ORTHO05D008804 1.4e-106 390.2 287 70.7
ECA240G3857 Erigeron canadensis HOM05D001568 ORTHO05D008804 4.2e-106 388.7 291 69.4
Prupe.8G149200 Prunus persica HOM05D001568 ORTHO05D008804 4.2e-106 388.7 294 66.3
Gorai.008G019500 Gossypium raimondii HOM05D001568 ORTHO05D008804 2.1e-105 386.3 252 74.2
TWI14G1141 Tripterygium wilfordii HOM05D001568 ORTHO05D008804 2.1e-105 386.3 277 70.0
Haze_10309 Corylus avellana HOM05D001568 ORTHO05D008804 2.7e-105 386.0 306 67.0
FvH4_2g03440 Fragaria vesca HOM05D001568 ORTHO05D008804 3.5e-105 385.6 256 73.8
RcHm_v2.0_Chr6g0248601 Rosa chinensis HOM05D001568 ORTHO05D008804 4.6e-105 385.2 275 70.9
Nitab4.5_0010145g0020 Nicotiana tabacum HOM05D001568 ORTHO05D008804 1.0e-104 384.0 310 64.8
Potri.001G290100 Populus trichocarpa HOM05D001568 ORTHO05D008804 1.0e-104 384.0 271 72.3
TPR.G21139 Trifolium pratense HOM05D001568 ORTHO05D008804 1.0e-104 384.0 257 73.5
PSO017G1092 Papaver somniferum HOM05D001568 ORTHO05D008804 1.7e-104 383.3 256 73.4
Thecc.02G119500 Theobroma cacao HOM05D001568 ORTHO05D008804 5.1e-104 381.7 295 67.5
PSO170G6576 Papaver somniferum HOM05D001568 ORTHO05D008804 6.6e-104 381.3 298 66.4
Gohir.A12G018701 Gossypium hirsutum HOM05D001568 ORTHO05D008804 1.1e-103 380.6 256 72.7
Aqoxy1G00265 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 1.9e-103 379.8 254 74.0
Actinidia04394 Actinidia chinensis HOM05D001568 ORTHO05D008804 7.3e-103 377.9 290 67.6
Ca_11027_v3 Cicer arietinum L. HOM05D001568 ORTHO05D008804 7.3e-103 377.9 298 66.4
Medtr1g106055 Medicago truncatula HOM05D001568 ORTHO05D008804 9.6e-103 377.5 257 72.8
Nn5g30645 Nelumbo nucifera HOM05D001568 ORTHO05D008804 9.6e-103 377.5 251 73.7
CAN.G606.69 Capsicum annuum HOM05D001568 ORTHO05D008804 3.6e-102 375.6 319 64.3
Glyma.20G135600 Glycine max HOM05D001568 ORTHO05D008804 1.1e-101 374.0 293 66.6
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 2.4e-101 372.9 256 70.7
Lj1g0020001 Lotus japonicus HOM05D001568 ORTHO05D008804 5.3e-101 371.7 271 68.3
COL.COLO4_32489 Corchorus olitorius HOM05D001568 ORTHO05D008804 1.2e-100 370.5 297 65.3
Lalb_Chr06g0165001 Lupinus albus HOM05D001568 ORTHO05D008804 2.2e-99 366.3 294 66.0
Cfa004706 Carpinus fangiana HOM05D001568 ORTHO05D008804 6.4e-99 364.8 299 66.2
VMungo0720G2114 Vigna mungo HOM05D001568 ORTHO05D008804 8.4e-99 364.4 298 65.1
QL11p029473 Quercus lobata HOM05D001568 ORTHO05D008804 1.4e-98 363.6 310 60.0
DCAR_001738 Daucus carota HOM05D001568 ORTHO05D008804 7.1e-98 361.3 295 63.1
THA.LOC104826496 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 7.1e-98 361.3 271 66.4
AL1G57570 Arabidopsis lyrata HOM05D001568 ORTHO05D008804 1.6e-97 360.1 254 69.7
Sc14g0002500 Simmondsia chinensis HOM05D001568 ORTHO05D008804 3.5e-97 359.0 251 71.7
THA.LOC104826495 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 3.5e-97 359.0 271 66.1
Lj9A337T44 Lonicera japonica HOM05D001568 ORTHO05D008804 1.7e-96 356.7 229 77.3
Carub.0151s0002 Capsella rubella HOM05D001568 ORTHO05D008804 5.1e-96 355.1 254 68.9
CDE04G1257 Ceratophyllum demersum HOM05D001568 ORTHO05D008804 8.7e-96 354.4 251 67.7
BcaB07g33452 Brassica carinata HOM05D001568 ORTHO05D008804 1.5e-95 353.6 250 68.4
FAN15G2988 Fragaria x ananassa HOM05D001568 ORTHO05D008804 2.5e-95 352.8 234 73.9
Lsat_1_v5_gn_9_113380 Lactuca sativa HOM05D001568 ORTHO05D008804 2.5e-95 352.8 291 64.9
MELO3C018530.2 Cucumis melo HOM05D001568 ORTHO05D008804 3.3e-95 352.4 293 61.8
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 3.3e-95 352.4 223 78.0
Sp1g36840 Schrenkiella parvula HOM05D001568 ORTHO05D008804 4.3e-95 352.1 254 67.3
SpUn0137_0040 Schrenkiella parvula HOM05D001568 ORTHO05D008804 4.3e-95 352.1 254 67.3
CsaV3_7G007700 Cucumis sativus L. HOM05D001568 ORTHO05D008804 5.6e-95 351.7 295 61.0
MD10G1109100 Malus domestica HOM05D001568 ORTHO05D008804 2.1e-94 349.7 234 72.6
arahy.Tifrunner.gnm1.ann1.ESII2D Arachis hypogaea HOM05D001568 ORTHO05D008804 2.8e-94 349.4 231 74.5
AT1G50000 Arabidopsis thaliana HOM05D001568 ORTHO05D008804 4.8e-94 348.6 250 68.4
Cfa004705 Carpinus fangiana HOM05D001568 ORTHO05D008804 4.8e-94 348.6 234 73.9
arahy.Tifrunner.gnm1.ann1.804FU2 Arachis hypogaea HOM05D001568 ORTHO05D008804 6.2e-94 348.2 231 74.0
ATR0739G203 Amborella trichopoda HOM05D001568 ORTHO05D008804 2.4e-93 346.3 248 68.5
BcaC08g43178 Brassica carinata HOM05D001568 ORTHO05D008804 1.5e-92 343.6 261 65.1
Gohir.D12G019200 Gossypium hirsutum HOM05D001568 ORTHO05D008804 7.6e-92 341.3 252 68.7
MBI16_g16470_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D008804 7.6e-92 341.3 228 72.4
A06p03430 Brassica napus HOM05D001568 ORTHO05D008804 2.2e-91 339.7 263 65.0
C06p04780 Brassica napus HOM05D001568 ORTHO05D008804 1.4e-90 337.0 262 64.9
BolC6t35607H Brassica oleracea HOM05D001568 ORTHO05D008804 1.4e-90 337.0 262 64.9
Os03g0729700 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D008804 9.3e-90 334.3 252 63.5
BraA06t23551Z Brassica rapa HOM05D001568 ORTHO05D008804 4.6e-89 332.0 265 63.8
Peaxi162Scf00016g03020 Petunia axillaris HOM05D001568 ORTHO05D008804 6.0e-89 331.6 255 66.7
Thhalv10011739m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 1.9e-87 326.6 233 67.8
HPP92_026588 Vanilla planifolia HOM05D001568 ORTHO05D008804 4.3e-87 325.5 251 63.7
ClCG02G007120 Citrullus lanatus HOM05D001568 ORTHO05D008804 2.1e-86 323.2 289 59.5
AUR62027019 Chenopodium quinoa HOM05D001568 ORTHO05D008804 6.9e-85 318.2 217 74.7
Hma1.2p1_0661F.1_g198116 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 1.3e-83 313.9 203 76.8
Phvul.007G046900 Phaseolus vulgaris HOM05D001568 ORTHO05D008804 5.5e-82 308.5 247 64.8
CARHR040100 Cardamine hirsuta HOM05D001568 ORTHO05D008804 4.3e-79 298.9 218 67.9
AUR62030859 Chenopodium quinoa HOM05D001568 ORTHO05D008804 1.3e-78 297.4 205 73.7
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 2.0e-76 290.0 263 60.5
Aa31LG10G4130 Aethionema arabicum HOM05D001568 ORTHO05D008804 4.5e-76 288.9 207 68.6
PGR142G1084 Punica granatum HOM05D001568 ORTHO05D008804 2.2e-75 286.6 204 70.6
Psat6g214440 Pisum sativum HOM05D001568 ORTHO05D008804 5.1e-72 275.4 170 77.6
AagrBONN_evm.TU.Sc2ySwM_362.475 Anthoceros agrestis HOM05D001568 ORTHO05D008804 6.7e-72 275.0 245 56.3
Ah.01g007040 Amaranthus hybridus HOM05D001568 ORTHO05D008804 3.3e-71 272.7 183 69.9
Mapoly0081s0053 Marchantia polymorpha HOM05D001568 ORTHO05D008804 1.1e-69 267.7 250 51.2
Pp3c3_17050 Physcomitrium patens HOM05D001568 ORTHO05D008804 1.2e-65 254.2 247 51.8
Sabra16G0181700 Salix brachista HOM05D001568 ORTHO05D008804 1.3e-62 244.2 213 62.4
Sed0001597 Sechium edule HOM05D001568 ORTHO05D008804 2.2e-62 243.4 250 52.0
FAN24G1144 Fragaria x ananassa HOM05D001568 ORTHO05D008804 5.3e-61 238.8 178 68.5
SMO358G0428 Selaginella moellendorffii HOM05D001568 ORTHO05D008804 5.3e-61 238.8 247 49.0
THA.LOC104809178 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 2.6e-60 236.5 165 69.7
CBR_g48696 Chara braunii HOM05D001568 ORTHO05D008804 1.3e-59 234.2 250 49.6
Aqoxy335s004 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 8.8e-48 194.9 134 72.4
TAR376G0809 Trochodendron aralioides HOM05D001568 ORTHO05D008804 1.1e-47 194.5 293 45.7
Manes.10G086502 Manihot esculenta HOM05D001568 ORTHO05D008804 5.7e-47 192.2 252 43.3
MSTRG.20236 Avicennia marina HOM05D001568 ORTHO05D008804 1.1e-34 151.4 102 78.4
FAN24G0164 Fragaria x ananassa HOM05D001568 ORTHO05D008804 8.0e-33 145.2 116 62.9
MCO02G312 Micromonas commoda HOM05D001568 ORTHO05D008804 1.4e-29 134.4 170 42.9
Cre03.g175800 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D008804 2.8e-25 120.2 341 30.2
Thhalv10012254m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 1.2e-23 114.8 101 56.4
PRCOL_00000434 Prasinoderma coloniale HOM05D001568 ORTHO05D008804 1.2e-20 104.8 299 30.4
RhsimUnG0183700 Rhododendron simsii HOM05D002338 ORTHO05D006706 2.1e-17 94.0 103 54.4
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 4.7e-17 92.8 102 53.9
Ah.01g007020 Amaranthus hybridus HOM05D001568 ORTHO05D008804 3.0e-11 73.6 48 72.9
RcHm_v2.0_Chr6g0248571 Rosa chinensis HOM05D001568 ORTHO05D008804 4.3e-10 69.7 66 54.5
C05p34140 Brassica napus HOM05D001568 ORTHO05D019891 6.8e-08 62.4 51 56.9
BcaC05g27454 Brassica carinata HOM05D001568 ORTHO05D019891 2.0e-07 60.8 51 52.9
BcaC05g27456 Brassica carinata HOM05D001568 ORTHO05D019891 2.0e-07 60.8 51 52.9
BolC5t32148H Brassica oleracea HOM05D058656 ORTHO05D019891 2.0e-07 60.8 51 52.9
Actinidia27998 Actinidia chinensis HOM05D001568 ORTHO05D008804 1.7e-06 57.8 34 76.5


User provided reference genes

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