Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 4.0e-198 694.5 333 100.0
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 4.9e-172 607.8 342 86.0
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 1.2e-165 586.6 344 82.8
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 2.0e-165 585.9 341 84.8
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 7.3e-160 567.4 349 77.4
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 2.2e-156 555.8 349 77.4
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 2.2e-156 555.8 349 77.4
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 2.2e-156 555.8 345 78.6
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 3.2e-155 552.0 342 78.7
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 2.7e-154 548.9 346 77.2
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 3.5e-154 548.5 334 77.8
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 1.7e-153 546.2 351 74.9
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 1.7e-153 546.2 346 76.6
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 6.6e-153 544.3 360 75.3
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.9e-152 542.7 350 74.3
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 1.9e-152 542.7 346 76.3
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.5e-149 533.1 348 74.7
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 4.4e-149 531.6 358 72.9
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 1.1e-147 526.9 349 72.8
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 3.2e-147 525.4 408 66.7
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 5.4e-147 524.6 349 72.8
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 5.4e-147 524.6 371 71.4
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 6.0e-146 521.2 351 73.8
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 7.8e-146 520.8 370 70.3
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 1.3e-145 520.0 341 74.5
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 3.0e-145 518.8 344 73.3
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 3.0e-145 518.8 357 71.4
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 3.0e-145 518.8 344 75.9
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 1.5e-144 516.5 341 73.9
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 1.5e-144 516.5 338 73.7
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 3.3e-144 515.4 347 72.9
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 3.3e-144 515.4 343 74.1
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 4.3e-144 515.0 342 74.0
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 5.6e-144 514.6 349 73.1
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 5.6e-144 514.6 352 71.9
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 5.6e-144 514.6 348 72.1
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 9.6e-144 513.8 358 71.2
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 1.3e-143 513.5 341 73.3
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 1.6e-143 513.1 348 72.1
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 2.8e-143 512.3 333 73.9
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 2.8e-143 512.3 376 69.4
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 3.6e-143 511.9 363 70.5
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 4.8e-143 511.5 365 71.2
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 4.8e-143 511.5 345 72.2
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 6.2e-143 511.1 361 70.4
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 1.4e-142 510.0 348 71.8
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 1.8e-142 509.6 362 70.2
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 4.0e-142 508.4 342 73.4
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 4.0e-142 508.4 352 72.4
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 5.3e-142 508.1 355 70.1
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 6.9e-142 507.7 355 70.1
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 1.2e-141 506.9 361 70.4
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 4.5e-141 505.0 347 71.5
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 5.8e-141 504.6 347 71.5
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 2.9e-140 502.3 370 68.9
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 6.4e-140 501.1 336 75.0
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 8.4e-140 500.7 348 72.7
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 8.4e-140 500.7 374 67.1
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 8.4e-140 500.7 371 68.7
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 2.4e-139 499.2 358 70.4
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 4.2e-139 498.4 339 70.2
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 4.2e-139 498.4 361 69.3
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 5.4e-139 498.0 355 69.0
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 5.4e-139 498.0 355 69.3
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 7.1e-139 497.7 330 73.0
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 7.1e-139 497.7 514 54.5
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 9.3e-139 497.3 341 71.8
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 1.8e-137 493.0 333 71.5
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 1.8e-137 493.0 327 73.7
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 2.3e-137 492.7 354 68.1
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 2.3e-137 492.7 354 68.6
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 3.0e-137 492.3 356 68.5
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 3.9e-137 491.9 343 70.8
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 5.1e-137 491.5 350 71.7
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 8.7e-137 490.7 342 71.9
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 8.7e-137 490.7 355 67.6
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 3.3e-136 488.8 354 67.2
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 3.3e-136 488.8 352 71.9
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 5.6e-136 488.0 356 68.0
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 8.1e-135 484.2 353 67.7
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.4e-134 482.6 343 68.8
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 4.0e-134 481.9 355 67.0
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 4.5e-133 478.4 352 67.6
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 1.3e-132 476.9 373 66.5
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 1.7e-132 476.5 357 65.5
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 4.9e-132 474.9 339 67.8
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 6.4e-132 474.6 328 70.7
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 8.4e-132 474.2 343 68.5
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 4.2e-131 471.9 344 69.2
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 4.2e-131 471.9 353 65.7
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 9.3e-131 470.7 357 66.7
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.2e-130 470.3 362 62.4
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 4.6e-130 468.4 346 68.5
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 4.6e-130 468.4 346 68.5
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 4.6e-130 468.4 330 70.3
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 6.0e-130 468.0 353 65.7
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 6.0e-130 468.0 343 68.2
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 1.8e-129 466.5 353 67.1
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 3.0e-129 465.7 346 67.6
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 3.9e-129 465.3 353 65.7
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 8.7e-129 464.2 353 66.3
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.5e-128 463.4 344 67.2
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 2.5e-128 462.6 353 66.0
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 7.4e-128 461.1 354 65.5
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 9.6e-128 460.7 353 65.7
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 8.2e-127 457.6 353 64.3
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 3.1e-126 455.7 374 63.4
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 2.6e-125 452.6 329 66.9
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 5.8e-125 451.4 345 65.5
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 1.0e-124 450.7 345 65.2
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.0e-124 450.7 342 67.0
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.3e-124 450.3 374 59.9
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.4e-123 446.8 347 64.3
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 2.5e-123 446.0 345 64.6
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 9.3e-123 444.1 337 65.3
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 1.2e-122 443.7 334 68.0
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 2.3e-121 439.5 351 64.4
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 3.0e-121 439.1 337 66.2
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 3.9e-121 438.7 353 63.7
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 8.7e-121 437.6 339 66.1
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 2.2e-119 433.0 368 61.7
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 2.8e-119 432.6 361 62.3
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 2.8e-119 432.6 429 55.9
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 6.3e-119 431.4 308 69.8
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.8e-118 429.9 312 67.9
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 2.4e-118 429.5 352 60.5
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 2.5e-115 419.5 411 56.0
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 2.7e-114 416.0 324 68.8
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 2.3e-113 412.9 327 66.1
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 1.3e-108 397.1 356 57.3
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 4.7e-106 388.7 365 57.5
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 2.6e-104 382.9 324 59.6
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 3.3e-96 355.9 343 54.2
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 4.1e-94 349.0 331 55.6
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 1.1e-86 324.3 384 47.9
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 2.2e-84 316.6 240 65.4
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 2.2e-79 300.1 366 47.0
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 2.0e-77 293.5 164 79.9
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 4.5e-77 292.4 308 55.2
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 3.6e-74 282.7 372 42.7
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 2.6e-72 276.6 367 43.9
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 6.3e-71 271.9 337 45.4
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 1.7e-68 263.8 235 52.8
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 9.5e-67 258.1 391 38.4
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 2.8e-66 256.5 210 66.2
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 3.1e-65 253.1 172 76.7
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 4.9e-63 245.7 207 65.2
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 3.2e-62 243.0 238 57.1
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 3.2e-62 243.0 238 57.1
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 3.6e-58 229.6 235 60.4
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 2.9e-55 219.9 176 66.5
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 8.9e-49 198.4 136 75.0
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 2.1e-45 187.2 128 63.3
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 1.9e-38 164.1 102 74.5
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 3.0e-36 156.8 378 32.0
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.3e-34 151.4 122 59.8
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 2.6e-32 143.7 335 33.4
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 3.0e-28 130.2 72 76.4
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.9e-14 84.3 63 68.3
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 1.6e-13 81.3 78 57.7
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.5e-08 64.7 33 75.8


User provided reference genes

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