Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B00414 Erythranthe guttata HOM05D000827 ORTHO05D001318 3.2e-75 285.0 149 100.0
MSTRG.16697 Avicennia marina HOM05D000827 ORTHO05D001318 6.0e-29 131.3 102 72.5
MSTRG.20202 Avicennia marina HOM05D000827 ORTHO05D001318 5.1e-28 128.3 102 69.6
Oeu010412.1 Olea europaea HOM05D000827 ORTHO05D001318 3.3e-27 125.6 102 68.6
SalBow6G5645 Salvia bowleyana HOM05D000827 ORTHO05D001318 2.1e-26 122.9 102 68.6
Dinv42213 Davidia involucrata HOM05D000827 ORTHO05D001318 3.6e-26 122.1 109 64.2
Oeu016085.1 Olea europaea HOM05D000827 ORTHO05D001318 6.2e-26 121.3 103 67.0
Lj5A217G84 Lonicera japonica HOM05D000827 ORTHO05D001318 2.4e-25 119.4 102 66.7
Hma1.2p1_1023F.1_g248950 Hydrangea macrophylla HOM05D000827 ORTHO05D001318 4.4e-24 115.2 109 59.6
Dinv15782 Davidia involucrata HOM05D000827 ORTHO05D001318 9.9e-24 114.0 107 62.6
SGA_v2.0_scaffold13G06620 Striga asiatica HOM05D000827 ORTHO05D001318 2.2e-23 112.8 103 63.1
Migut.A00713 Erythranthe guttata HOM05D000827 ORTHO05D001318 4.9e-23 111.7 104 62.5
Hma1.2p1_1174F.1_g263910 Hydrangea macrophylla HOM05D000827 ORTHO05D001318 1.1e-22 110.5 107 61.7
CSS0013162 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001318 1.9e-22 109.8 110 60.9
Nitab4.5_0002017g0070 Nicotiana tabacum HOM05D000827 ORTHO05D001318 1.9e-22 109.8 103 63.1
vmacro19463 Vaccinium macrocarpon HOM05D000827 ORTHO05D001318 1.9e-22 109.8 107 62.6
Nitab4.5_0004396g0010 Nicotiana tabacum HOM05D000827 ORTHO05D001318 3.2e-22 109.0 103 65.0
PGSC0003DMG400009782 Solanum tuberosum HOM05D000827 ORTHO05D001318 4.2e-22 108.6 103 64.1
THA.LOC104819539 Tarenaya hassleriana HOM05D000827 ORTHO05D001318 9.3e-22 107.5 104 57.7
Sopen10g020980 Solanum pennellii HOM05D000827 ORTHO05D001318 3.5e-21 105.5 103 62.1
Migut.I00273 Erythranthe guttata HOM05D000827 ORTHO05D001318 7.8e-21 104.4 105 62.9
CSS0048380 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001318 1.3e-20 103.6 105 59.0
THA.LOC104807230 Tarenaya hassleriana HOM05D000827 ORTHO05D001318 1.7e-20 103.2 103 55.3
Actinidia04377 Actinidia chinensis HOM05D000827 ORTHO05D001318 2.3e-20 102.8 110 57.3
PGSC0003DMG400023191 Solanum tuberosum HOM05D000827 ORTHO05D001318 3.0e-20 102.4 104 63.5
Thhalv10026522m.g Eutrema salsugineum HOM05D000827 ORTHO05D001318 5.1e-20 101.7 104 55.8
Nitab4.5_0004685g0010 Nicotiana tabacum HOM05D000827 ORTHO05D001318 5.1e-20 101.7 109 58.7
unitig_699.g19872 Utricularia gibba HOM05D005496 ORTHO05D006677 5.1e-20 101.7 105 61.0
Nitab4.5_0001480g0030 Nicotiana tabacum HOM05D000827 ORTHO05D001318 6.6e-20 101.3 109 58.7
PGSC0003DMG400025852 Solanum tuberosum HOM05D000827 ORTHO05D001318 1.1e-19 100.5 108 55.6
Cpa.g.sc200.3 Carica papaya HOM05D000827 ORTHO05D001318 1.5e-19 100.1 108 54.6
Aa31LG8G12940 Aethionema arabicum HOM05D000827 ORTHO05D001318 1.9e-19 99.8 105 54.3
AL7G16980 Arabidopsis lyrata HOM05D000827 ORTHO05D001318 1.9e-19 99.8 108 56.5
A03p62820 Brassica napus HOM05D000827 ORTHO05D001318 3.3e-19 99.0 106 55.7
BraA01t00400Z Brassica rapa HOM05D000827 ORTHO05D001318 3.3e-19 99.0 103 57.3
BraA03t15358Z Brassica rapa HOM05D000827 ORTHO05D001318 3.3e-19 99.0 106 55.7
Carub.0007s0607 Capsella rubella HOM05D000827 ORTHO05D001318 7.3e-19 97.8 108 58.3
Sopen01g049570 Solanum pennellii HOM05D000827 ORTHO05D001318 7.3e-19 97.8 109 53.2
C01p04480 Brassica napus HOM05D000827 ORTHO05D001318 9.6e-19 97.4 103 56.3
BolC1t00434H Brassica oleracea HOM05D000827 ORTHO05D001318 9.6e-19 97.4 103 56.3
CAN.G606.32 Capsicum annuum HOM05D000827 ORTHO05D001318 9.6e-19 97.4 109 55.0
C07p60510 Brassica napus HOM05D000827 ORTHO05D001318 1.6e-18 96.7 105 55.2
BolC7t46483H Brassica oleracea HOM05D000827 ORTHO05D001318 1.6e-18 96.7 105 55.2
Solyc01g107330.4 Solanum lycopersicum HOM05D000827 ORTHO05D001318 1.6e-18 96.7 109 54.1
Gohir.D12G020900 Gossypium hirsutum HOM05D000827 ORTHO05D001318 1.1e-17 94.0 102 53.9
unitig_744.g24220 Utricularia gibba HOM05D000827 ORTHO05D001318 1.1e-17 94.0 105 57.1
Gorai.008G021200 Gossypium raimondii HOM05D000827 ORTHO05D001318 1.8e-17 93.2 102 53.9
AT4G34290 Arabidopsis thaliana HOM05D000827 ORTHO05D001318 3.1e-17 92.4 108 53.7
Sp3g28300 Schrenkiella parvula HOM05D000827 ORTHO05D001318 3.1e-17 92.4 104 56.7
CARHR242480 Cardamine hirsuta HOM05D000827 ORTHO05D001318 6.9e-17 91.3 109 54.1
Potri.009G092200 Populus trichocarpa HOM05D000827 ORTHO05D001318 6.9e-17 91.3 104 52.9
Actinidia34382 Actinidia chinensis HOM05D000827 ORTHO05D001318 9.0e-17 90.9 107 56.1
Ciclev10029545m.g Citrus clementina HOM05D000827 ORTHO05D001318 9.0e-17 90.9 104 57.7
COL.COLO4_32550 Corchorus olitorius HOM05D000827 ORTHO05D001318 9.0e-17 90.9 103 54.4
Atru.chr5.2422 Acer truncatum HOM05D000827 ORTHO05D001318 1.2e-16 90.5 103 53.4
AL3G46700 Arabidopsis lyrata HOM05D000827 ORTHO05D001318 1.5e-16 90.1 105 51.4
QL11p032161 Quercus lobata HOM05D000827 ORTHO05D001318 1.5e-16 90.1 103 52.4
AT2G14880 Arabidopsis thaliana HOM05D000827 ORTHO05D001318 2.6e-16 89.4 105 52.4
Duzib052G0022 Durio zibethinus HOM05D000827 ORTHO05D001318 3.4e-16 89.0 110 48.2
Gohir.A12G020600 Gossypium hirsutum HOM05D000827 ORTHO05D001318 3.4e-16 89.0 102 52.0
Sabra09G0070900 Salix brachista HOM05D000827 ORTHO05D001318 3.4e-16 89.0 104 51.0
Carub.0003s2888 Capsella rubella HOM05D000827 ORTHO05D001318 4.5e-16 88.6 106 51.9
Thhalv10022904m.g Eutrema salsugineum HOM05D000827 ORTHO05D001318 5.8e-16 88.2 104 54.8
Nn5g30486 Nelumbo nucifera HOM05D000827 ORTHO05D001318 5.8e-16 88.2 105 60.0
Aa31sc72G70 Aethionema arabicum HOM05D000827 ORTHO05D001318 9.9e-16 87.4 103 48.5
Cfa004619 Carpinus fangiana HOM05D000827 ORTHO05D001318 9.9e-16 87.4 106 55.7
Thecc.02G112800 Theobroma cacao HOM05D000827 ORTHO05D001318 9.9e-16 87.4 102 52.0
Gohir.A03G184500 Gossypium hirsutum HOM05D000827 ORTHO05D001318 1.3e-15 87.0 102 51.0
Gohir.D02G206000 Gossypium hirsutum HOM05D000827 ORTHO05D001318 2.2e-15 86.3 102 50.0
TAR376G0708 Trochodendron aralioides HOM05D000827 ORTHO05D001318 2.2e-15 86.3 102 54.9
Nn1g04640 Nelumbo nucifera HOM05D000827 ORTHO05D001318 2.9e-15 85.9 111 54.1
TAR628G1002 Trochodendron aralioides HOM05D000827 ORTHO05D001318 3.8e-15 85.5 84 58.3
TWI31G1098 Tripterygium wilfordii HOM05D000827 ORTHO05D001318 8.4e-15 84.3 104 51.0
TWI79G0611 Tripterygium wilfordii HOM05D000827 ORTHO05D001318 1.9e-14 83.2 103 50.5
PGR042G0825 Punica granatum HOM05D000827 ORTHO05D001318 2.4e-14 82.8 107 49.5
TAR381G1509 Trochodendron aralioides HOM05D000827 ORTHO05D001318 2.4e-14 82.8 104 55.8
Eucgr.G01289 Eucalyptus grandis HOM05D000827 ORTHO05D001318 3.2e-14 82.4 108 50.9
RcHm_v2.0_Chr6g0254211 Rosa chinensis HOM05D000827 ORTHO05D001318 3.2e-14 82.4 114 51.8
BcaC01g00917 Brassica carinata HOM05D000827 ORTHO05D001318 7.1e-14 81.3 111 48.6
DCAR_001667 Daucus carota HOM05D000827 ORTHO05D001318 9.3e-14 80.9 115 47.0
CiPaw.06G167600 Carya illinoinensis HOM05D000827 ORTHO05D001318 1.2e-13 80.5 106 50.0
Duzib132G0744 Durio zibethinus HOM05D000827 ORTHO05D001318 1.2e-13 80.5 108 47.2
Gorai.005G233400 Gossypium raimondii HOM05D000827 ORTHO05D001318 1.2e-13 80.5 102 48.0
Aqoxy6G02793 Aquilegia oxysepala HOM05D000827 ORTHO05D001318 1.6e-13 80.1 85 60.0
Manes.10G072700 Manihot esculenta HOM05D000827 ORTHO05D001318 1.6e-13 80.1 106 47.2
FAN15G0914 Fragaria x ananassa HOM05D000827 ORTHO05D001318 2.1e-13 79.7 109 55.0
HanXRQChr16g0509121 Helianthus annuus HOM05D000827 ORTHO05D001318 2.1e-13 79.7 106 47.2
Lsat_1_v5_gn_7_86080 Lactuca sativa HOM05D000827 ORTHO05D001318 2.1e-13 79.7 109 46.8
Manes.10G072600 Manihot esculenta HOM05D000827 ORTHO05D001318 2.1e-13 79.7 106 49.1
Prupe.8G139100 Prunus persica HOM05D000827 ORTHO05D001318 2.7e-13 79.3 109 50.5
CiPaw.05G014400 Carya illinoinensis HOM05D000827 ORTHO05D001318 4.6e-13 78.6 107 50.5
FvH4_2g04600 Fragaria vesca HOM05D000827 ORTHO05D001318 4.6e-13 78.6 112 53.6
FAN20G2663 Fragaria x ananassa HOM05D000827 ORTHO05D001318 1.0e-12 77.4 109 54.1
BcaC06g30919 Brassica carinata HOM05D000827 ORTHO05D001318 1.8e-12 76.6 58 65.5
FAN24G1876 Fragaria x ananassa HOM05D000827 ORTHO05D001318 3.9e-12 75.5 112 52.7
CDE04G0823 Ceratophyllum demersum HOM05D000827 ORTHO05D001318 5.1e-12 75.1 63 60.3
CDE06G1156 Ceratophyllum demersum HOM05D000827 ORTHO05D001318 5.1e-12 75.1 85 51.8
DCAR_021969 Daucus carota HOM05D000827 ORTHO05D001318 1.5e-11 73.6 85 52.9
ATR0618G387 Amborella trichopoda HOM05D000827 ORTHO05D001318 1.9e-11 73.2 71 62.0
ClCG02G006640 Citrullus lanatus HOM05D000827 ORTHO05D001318 3.3e-11 72.4 84 51.2
FAN27G0395 Fragaria x ananassa HOM05D000827 ORTHO05D001318 3.3e-11 72.4 109 52.3
ATR0661G022 Amborella trichopoda HOM05D000827 ORTHO05D001318 5.6e-11 71.6 71 59.2
CANSAT25G0462 Cannabis sativa HOM05D000827 ORTHO05D001318 5.6e-11 71.6 109 46.8
CsaV3_7G007990 Cucumis sativus L. HOM05D000827 ORTHO05D001318 5.6e-11 71.6 102 44.1
Potri.001G297400 Populus trichocarpa HOM05D000827 ORTHO05D001318 1.6e-10 70.1 91 47.3
arahy.Tifrunner.gnm1.ann1.4BPU9Y Arachis hypogaea HOM05D000827 ORTHO05D001318 2.1e-10 69.7 106 47.2
arahy.Tifrunner.gnm1.ann1.MJPM8B Arachis hypogaea HOM05D000827 ORTHO05D001318 2.1e-10 69.7 106 47.2
Oeu011145.1 Olea europaea HOM05D001121 ORTHO05D001256 3.7e-10 68.9 40 85.0
MELO3C018505.2 Cucumis melo HOM05D000827 ORTHO05D001318 4.8e-10 68.6 105 42.9
Psat4g228120 Pisum sativum HOM05D000827 ORTHO05D001318 6.2e-10 68.2 106 49.1
Lj1g0012448 Lotus japonicus HOM05D000827 ORTHO05D001318 1.4e-09 67.0 102 47.1
Sc16g0004950 Simmondsia chinensis HOM05D000827 ORTHO05D001318 1.4e-09 67.0 95 46.3
Actinidia05504 Actinidia chinensis HOM05D000827 ORTHO05D001318 1.8e-09 66.6 40 80.0
PSO541G1858 Papaver somniferum HOM05D000827 ORTHO05D001318 1.8e-09 66.6 43 72.1
PSO675G7513 Papaver somniferum HOM05D000827 ORTHO05D001318 1.8e-09 66.6 43 72.1
Medtr5g005200 Medicago truncatula HOM05D000827 ORTHO05D001318 2.4e-09 66.2 75 56.0
Sed0001641 Sechium edule HOM05D000827 ORTHO05D001318 2.4e-09 66.2 68 55.9
Ca_24348_v3 Cicer arietinum L. HOM05D000827 ORTHO05D001318 4.0e-09 65.5 106 46.2
Glyma.01G243300 Glycine max HOM05D000827 ORTHO05D001318 6.9e-09 64.7 107 43.9
Ah.03g146290 Amaranthus hybridus HOM05D000827 ORTHO05D001318 9.0e-09 64.3 59 54.2
Peaxi162Scf00016g02621 Petunia axillaris HOM05D000827 ORTHO05D001318 9.0e-09 64.3 91 46.2
Glyma.11G001000 Glycine max HOM05D000827 ORTHO05D001318 1.5e-08 63.5 71 49.3
AUR62003961 Chenopodium quinoa HOM05D000827 ORTHO05D001318 4.5e-08 62.0 59 57.6
Phvul.002G052700 Phaseolus vulgaris HOM05D000827 ORTHO05D001318 4.5e-08 62.0 104 49.0
Lalb_Chr05g0210761 Lupinus albus HOM05D000827 ORTHO05D001318 5.8e-08 61.6 105 44.8
Sabra13G0061500 Salix brachista HOM05D000827 ORTHO05D001318 9.9e-08 60.8 55 60.0
A08p16970 Brassica napus HOM05D000827 ORTHO05D001318 1.3e-07 60.5 44 68.2
BraA08t33660Z Brassica rapa HOM05D000827 ORTHO05D001318 1.3e-07 60.5 44 68.2
DCAR_013509 Daucus carota HOM05D000827 ORTHO05D001318 1.7e-07 60.1 83 47.0
Peaxi162Scf00193g00721 Petunia axillaris HOM05D000827 ORTHO05D001318 1.7e-07 60.1 63 52.4
TPR.G8307 Trifolium pratense HOM05D000827 ORTHO05D001318 1.7e-07 60.1 109 42.2
EL10Ac6g15667 Beta vulgaris HOM05D000827 ORTHO05D001318 2.9e-07 59.3 101 37.6
Potri.013G070600 Populus trichocarpa HOM05D000827 ORTHO05D001318 4.9e-07 58.5 81 46.9
AUR62038273 Chenopodium quinoa HOM05D000827 ORTHO05D001318 6.4e-07 58.2 51 54.9
Os03g0761000 Oryza sativa ssp. japonica HOM05D000827 ORTHO05D001318 6.4e-07 58.2 42 64.3
Os12g0507500 Oryza sativa ssp. japonica HOM05D000827 ORTHO05D001318 8.4e-07 57.8 114 39.5
SEGI_40966 Sequoiadendron giganteum HOM05D000827 ORTHO05D001318 1.4e-06 57.0 47 57.4
Manes.09G133600 Manihot esculenta HOM05D000827 ORTHO05D001318 2.4e-06 56.2 64 43.8
ClCG05G002470 Citrullus lanatus HOM05D000827 ORTHO05D001318 3.2e-06 55.8 61 45.9
MD07G1081700 Malus domestica HOM05D000827 ORTHO05D001318 3.2e-06 55.8 69 43.5
Sabra16G0186400 Salix brachista HOM05D000827 ORTHO05D001318 4.2e-06 55.5 40 67.5
Cc02_g19550 Coffea canephora HOM05D000827 ORTHO05D001318 5.5e-06 55.1 31 83.9
Migut.B01419 Erythranthe guttata HOM05D000827 ORTHO05D001318 5.5e-06 55.1 82 42.7
VMungo1215G3336 Vigna mungo HOM05D000827 ORTHO05D001318 5.5e-06 55.1 102 39.2
GSVIVG01037881001 Vitis vinifera HOM05D000827 ORTHO05D001318 5.5e-06 55.1 31 83.9
Oeu055157.1 Olea europaea HOM05D000020 ORTHO05D000156 7.1e-06 54.7 31 83.9
Zm00001eb214330 Zea mays HOM05D000827 ORTHO05D001318 9.3e-06 54.3 56 53.6


User provided reference genes

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