Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B00279 Erythranthe guttata HOM05D001401 ORTHO05D006368 3.2e-148 528.5 280 100.0
SalBow6G2648 Salvia bowleyana HOM05D001401 ORTHO05D006368 1.4e-79 300.4 299 61.2
MSTRG.20113 Avicennia marina HOM05D001401 ORTHO05D006368 3.2e-76 289.3 311 58.8
Migut.N01216 Erythranthe guttata HOM05D001401 ORTHO05D006368 9.7e-73 277.7 293 59.0
MSTRG.5386 Avicennia marina HOM05D001401 ORTHO05D006368 1.8e-71 273.5 308 56.2
Oeu034083.1 Olea europaea HOM05D001401 ORTHO05D006368 1.3e-69 267.3 307 55.4
SGA_v2.0_scaffold58G20583 Striga asiatica HOM05D001401 ORTHO05D006368 1.5e-65 253.8 287 55.4
vmacro02151 Vaccinium macrocarpon HOM05D001401 ORTHO05D006368 1.5e-65 253.8 309 51.8
Solyc01g109260.3 Solanum lycopersicum HOM05D001401 ORTHO05D006368 3.4e-65 252.7 292 53.8
Nitab4.5_0003816g0020 Nicotiana tabacum HOM05D001401 ORTHO05D006368 4.4e-65 252.3 298 52.0
Sopen01g051420 Solanum pennellii HOM05D001401 ORTHO05D006368 6.3e-64 248.4 292 53.1
Peaxi162Scf00016g01140 Petunia axillaris HOM05D001401 ORTHO05D006368 1.1e-63 247.7 296 52.7
PGSC0003DMG400025176 Solanum tuberosum HOM05D001401 ORTHO05D006368 1.1e-63 247.7 292 53.4
Hma1.2p1_0584F.1_g183440 Hydrangea macrophylla HOM05D001401 ORTHO05D006368 7.0e-63 245.0 301 52.2
Nitab4.5_0004280g0010 Nicotiana tabacum HOM05D001401 ORTHO05D006368 1.0e-61 241.1 309 51.5
Oeu027593.1 Olea europaea HOM05D001574 ORTHO05D006368 1.7e-61 240.4 274 56.9
CAN.G322.101 Capsicum annuum HOM05D001401 ORTHO05D006368 4.2e-60 235.7 301 51.5
HanXRQChr10g0307141 Helianthus annuus HOM05D001401 ORTHO05D006368 3.0e-58 229.6 290 48.6
ECA234G2696 Erigeron canadensis HOM05D000324 ORTHO05D001014 5.2e-58 228.8 284 48.9
Actinidia27915 Actinidia chinensis HOM05D001401 ORTHO05D006368 8.8e-58 228.0 313 47.6
TAR628G1386 Trochodendron aralioides HOM05D001401 ORTHO05D006368 2.6e-57 226.5 302 50.0
Cc02_g18020 Coffea canephora HOM05D001401 ORTHO05D006368 7.5e-57 224.9 303 48.8
Actinidia00491 Actinidia chinensis HOM05D001401 ORTHO05D006368 1.3e-56 224.2 304 49.7
Lsat_1_v5_gn_5_118161 Lactuca sativa HOM05D001401 ORTHO05D006368 1.4e-55 220.7 291 49.8
Rhsim11G0172600 Rhododendron simsii HOM05D000554 ORTHO05D002829 1.4e-55 220.7 349 43.3
Hund06213 Selenicereus undatus HOM05D001401 ORTHO05D006368 1.2e-54 217.6 303 47.5
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 3.8e-53 212.6 295 47.8
DCAR_029001 Daucus carota HOM05D001401 ORTHO05D006368 6.6e-53 211.8 307 47.2
Hund00301 Selenicereus undatus HOM05D001401 ORTHO05D006368 2.5e-52 209.9 306 46.4
TAR381G0019 Trochodendron aralioides HOM05D001401 ORTHO05D006368 3.3e-52 209.5 303 46.5
Aqoxy6G00969 Aquilegia oxysepala HOM05D001401 ORTHO05D006368 9.5e-52 208.0 306 44.1
AUR62016681 Chenopodium quinoa HOM05D001401 ORTHO05D006368 1.6e-51 207.2 294 44.2
PSO700G0268 Papaver somniferum HOM05D001401 ORTHO05D006368 2.1e-51 206.8 294 46.9
AUR62011378 Chenopodium quinoa HOM05D001401 ORTHO05D006368 6.1e-51 205.3 294 43.9
CSS0017552 Camellia sinensis var. sinensis HOM05D001401 ORTHO05D006368 8.0e-51 204.9 309 45.6
PSO170G2675 Papaver somniferum HOM05D001401 ORTHO05D006368 3.0e-50 203.0 294 45.9
A07p04770 Brassica napus HOM05D001401 ORTHO05D006368 4.0e-50 202.6 293 46.1
BraA07t28264Z Brassica rapa HOM05D001401 ORTHO05D006368 4.0e-50 202.6 293 46.1
RcHm_v2.0_Chr6g0262181 Rosa chinensis HOM05D001401 ORTHO05D006368 6.8e-50 201.8 293 45.7
Aa31LG8G13520 Aethionema arabicum HOM05D001401 ORTHO05D006368 8.9e-50 201.4 303 44.9
Sed0023769 Sechium edule HOM05D001401 ORTHO05D006368 1.2e-49 201.1 296 45.3
Ah.01g006390 Amaranthus hybridus HOM05D001401 ORTHO05D006368 1.5e-49 200.7 288 46.2
Phvul.011G048500 Phaseolus vulgaris HOM05D001401 ORTHO05D006368 1.5e-49 200.7 304 44.1
Psat7g205720 Pisum sativum HOM05D001401 ORTHO05D006368 1.5e-49 200.7 306 45.4
VMungo1127G1180 Vigna mungo HOM05D001401 ORTHO05D006368 2.0e-49 200.3 305 44.3
CiPaw.05G060100 Carya illinoinensis HOM05D001401 ORTHO05D006368 5.7e-49 198.7 314 45.9
Sed0001686 Sechium edule HOM05D001401 ORTHO05D006368 5.7e-49 198.7 307 43.6
Hund00294 Selenicereus undatus HOM05D001401 ORTHO05D006368 1.3e-48 197.6 298 46.0
Gohir.D01G172200 Gossypium hirsutum HOM05D001401 ORTHO05D006368 3.7e-48 196.1 308 42.2
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 4.9e-48 195.7 327 43.1
C07p07640 Brassica napus HOM05D001401 ORTHO05D006368 6.3e-48 195.3 301 45.5
BolC7t41185H Brassica oleracea HOM05D001401 ORTHO05D006368 6.3e-48 195.3 301 45.5
Gorai.002G213800 Gossypium raimondii HOM05D001401 ORTHO05D006368 6.3e-48 195.3 308 41.9
FAN20G2914 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.4e-47 194.1 294 45.6
Dinv42099 Davidia involucrata HOM05D001401 ORTHO05D006368 2.4e-47 193.4 313 46.0
Thecc.02G031200 Theobroma cacao HOM05D001401 ORTHO05D006368 4.1e-47 192.6 330 40.6
Manes.15G147100 Manihot esculenta HOM05D001401 ORTHO05D006368 5.4e-47 192.2 322 42.2
arahy.Tifrunner.gnm1.ann1.U2ETAV Arachis hypogaea HOM05D001401 ORTHO05D006368 7.0e-47 191.8 309 42.1
Gohir.A01G181100 Gossypium hirsutum HOM05D001401 ORTHO05D006368 7.0e-47 191.8 308 41.6
Sc08g0000270 Simmondsia chinensis HOM05D001401 ORTHO05D006368 7.0e-47 191.8 304 44.7
AT2G16070 Arabidopsis thaliana HOM05D001401 ORTHO05D006368 9.2e-47 191.4 311 44.1
MD05G1071000 Malus domestica HOM05D001401 ORTHO05D006368 9.2e-47 191.4 299 45.8
Glyma.12G046700 Glycine max HOM05D001401 ORTHO05D006368 2.0e-46 190.3 303 43.2
Ca_20836_v3 Cicer arietinum L. HOM05D001401 ORTHO05D006368 2.7e-46 189.9 300 45.3
Lj3g0025450 Lotus japonicus HOM05D001401 ORTHO05D006368 2.7e-46 189.9 308 42.2
Lalb_Chr03g0025871 Lupinus albus HOM05D001401 ORTHO05D006368 2.7e-46 189.9 309 43.4
Sp3g29340 Schrenkiella parvula HOM05D001401 ORTHO05D006368 2.7e-46 189.9 321 42.7
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 3.5e-46 189.5 322 43.2
Carub.0003s2988 Capsella rubella HOM05D001401 ORTHO05D006368 5.9e-46 188.7 323 41.8
Haze_02430 Corylus avellana HOM05D001401 ORTHO05D006368 7.8e-46 188.3 300 43.7
Thhalv10022794m.g Eutrema salsugineum HOM05D001401 ORTHO05D006368 1.0e-45 188.0 310 43.2
BcaC06g36113 Brassica carinata HOM05D001401 ORTHO05D006368 1.7e-45 187.2 291 44.0
Lj9P365T45 Lonicera japonica HOM05D001401 ORTHO05D006368 2.3e-45 186.8 214 53.3
A03p45690 Brassica napus HOM05D001401 ORTHO05D006368 3.9e-45 186.0 286 44.1
BraA03t13701Z Brassica rapa HOM05D001401 ORTHO05D006368 8.6e-45 184.9 288 45.1
CARHR106370 Cardamine hirsuta HOM05D001401 ORTHO05D006368 1.1e-44 184.5 314 42.7
Sed0001319 Sechium edule HOM05D001401 ORTHO05D006368 1.1e-44 184.5 294 39.8
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 1.5e-44 184.1 321 43.0
Ciclev10028944m.g Citrus clementina HOM05D001401 ORTHO05D006368 2.5e-44 183.3 304 44.7
MELO3C021952.2 Cucumis melo HOM05D001401 ORTHO05D002222 2.5e-44 183.3 306 40.5
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 4.3e-44 182.6 323 40.2
BcaB08g34633 Brassica carinata HOM05D001401 ORTHO05D006368 5.6e-44 182.2 309 43.0
BcaC01g03041 Brassica carinata HOM05D001401 ORTHO05D006368 7.3e-44 181.8 303 41.6
C03p56790 Brassica napus HOM05D001401 ORTHO05D006368 7.3e-44 181.8 303 41.6
BolC3t17961H Brassica oleracea HOM05D001401 ORTHO05D006368 7.3e-44 181.8 303 41.6
PSO541G5534 Papaver somniferum HOM05D001401 ORTHO05D006368 7.3e-44 181.8 302 42.7
Glyma.11G121600 Glycine max HOM05D001401 ORTHO05D006368 1.2e-43 181.0 304 41.8
Lalb_Chr01g0002831 Lupinus albus HOM05D001401 ORTHO05D006368 2.1e-43 180.3 307 41.4
Dinv23564 Davidia involucrata HOM05D001401 ORTHO05D006368 2.8e-43 179.9 302 42.4
Duzib248G1632 Durio zibethinus HOM05D001401 ORTHO05D006368 2.8e-43 179.9 344 39.0
Cpa.g.sc62.97 Carica papaya HOM05D001401 ORTHO05D006368 3.6e-43 179.5 329 42.6
CsaV3_2G014470 Cucumis sativus L. HOM05D001401 ORTHO05D006368 1.0e-42 177.9 317 38.8
MBI16_g36202_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 1.4e-42 177.6 239 48.1
Sabra09G0084600 Salix brachista HOM05D001401 ORTHO05D006368 1.8e-42 177.2 316 42.4
PSO675G0936 Papaver somniferum HOM05D001401 ORTHO05D006368 2.3e-42 176.8 302 42.1
QL11p037824 Quercus lobata HOM05D001401 ORTHO05D006368 4.0e-42 176.0 340 39.1
A09p10890 Brassica napus HOM05D001401 ORTHO05D006368 2.0e-41 173.7 296 41.2
COL.COLO4_17797 Corchorus olitorius HOM05D000370 ORTHO05D001335 2.6e-41 173.3 284 40.8
Duzib132G0928 Durio zibethinus HOM05D001401 ORTHO05D006368 2.6e-41 173.3 326 38.7
Medtr4g068880 Medicago truncatula HOM05D001401 ORTHO05D006368 2.6e-41 173.3 302 41.7
TWI75G1696 Tripterygium wilfordii HOM05D001401 ORTHO05D006368 4.4e-41 172.6 306 39.9
THA.LOC104807334 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 5.8e-41 172.2 323 39.6
Cfa021516 Carpinus fangiana HOM05D001401 ORTHO05D006368 9.8e-41 171.4 238 46.6
TWI31G0569 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 3.7e-40 169.5 317 39.7
CANSAT25G1485 Cannabis sativa HOM05D001401 ORTHO05D006368 4.9e-40 169.1 306 40.8
Prupe.8G107000 Prunus persica HOM05D001401 ORTHO05D006368 1.9e-39 167.2 306 40.5
Sabra04G0099700 Salix brachista HOM05D001401 ORTHO05D006368 5.4e-39 165.6 363 37.7
CDE01G0160 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 1.2e-38 164.5 296 41.2
CsaV3_7G010190 Cucumis sativus L. HOM05D001401 ORTHO05D006368 7.8e-38 161.8 308 38.0
Medtr0026s0200 Medicago truncatula HOM05D001401 ORTHO05D006368 2.3e-37 160.2 228 45.6
Cfa021524 Carpinus fangiana HOM05D001401 ORTHO05D002222 1.1e-36 157.9 231 45.5
FAN24G0528 Fragaria x ananassa HOM05D001401 ORTHO05D006368 2.5e-36 156.8 293 41.0
QL11p040047 Quercus lobata HOM05D001401 ORTHO05D006368 4.3e-36 156.0 219 45.2
FAN15G1840 Fragaria x ananassa HOM05D001401 ORTHO05D006368 5.6e-36 155.6 221 46.2
Atru.chr5.2919 Acer truncatum HOM05D001401 ORTHO05D006368 9.5e-36 154.8 310 39.4
MELO3C018410.2 Cucumis melo HOM05D001401 ORTHO05D006368 1.2e-35 154.5 316 35.8
FvH4_2g07780 Fragaria vesca HOM05D001401 ORTHO05D006368 4.7e-35 152.5 294 40.8
ClCG09G017860 Citrullus lanatus HOM05D001401 ORTHO05D006368 6.2e-35 152.1 308 36.0
Ah.01g019700 Amaranthus hybridus HOM05D001401 ORTHO05D002222 2.3e-34 150.2 366 34.4
TPR.G28096 Trifolium pratense HOM05D001401 ORTHO05D006368 2.3e-34 150.2 302 37.4
ClCG02G005370 Citrullus lanatus HOM05D001401 ORTHO05D006368 5.2e-34 149.1 312 35.9
Eucgr.I01238 Eucalyptus grandis HOM05D001401 ORTHO05D006368 5.2e-34 149.1 293 38.9
PGR042G1488 Punica granatum HOM05D001401 ORTHO05D006368 5.8e-33 145.6 300 39.3
Os07g0123300 Oryza sativa ssp. japonica HOM05D001401 ORTHO05D006368 2.9e-32 143.3 248 39.5
TWI79G1069 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 6.4e-32 142.1 309 36.9
THA.LOC104820173 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 3.5e-30 136.3 318 36.5
GSVIVG01031902001 Vitis vinifera HOM05D001401 ORTHO05D006368 6.0e-30 135.6 147 55.8
C09p12860 Brassica napus HOM05D001401 ORTHO05D006368 1.3e-29 134.4 289 38.8
BolC9t54175H Brassica oleracea HOM05D001401 ORTHO05D006368 1.3e-29 134.4 289 38.8
SEGI_00142 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 2.3e-29 133.7 319 33.5
Zm00001eb299190 Zea mays HOM05D001401 ORTHO05D006368 3.3e-28 129.8 323 33.1
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 7.3e-28 128.6 147 54.4
CDE04G2456 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 2.1e-27 127.1 290 36.6
EL10Ac9g21774 Beta vulgaris HOM05D001401 ORTHO05D002222 8.9e-26 121.7 265 36.6
BraA09t36729Z Brassica rapa HOM05D001401 ORTHO05D006368 6.0e-22 109.0 155 45.8
unitig_21.g20770 Utricularia gibba HOM05D000370 ORTHO05D001335 1.7e-21 107.5 254 35.8
BcaNung01772 Brassica carinata HOM05D001401 ORTHO05D006368 3.9e-21 106.3 173 43.4
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 2.1e-19 100.5 365 31.0
SalBow1G1061 Salvia bowleyana HOM05D001999 ORTHO05D001994 3.6e-19 99.8 59 84.7
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 4.4e-17 92.8 348 28.7
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 7.6e-17 92.0 251 31.9
SEGI_14403 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 9.9e-17 91.7 163 39.3
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 2.2e-16 90.5 353 28.6
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 2.4e-15 87.0 354 26.8
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 4.2e-15 86.3 380 27.4
BcaB07g31630 Brassica carinata HOM05D006912 ORTHO05D008686 7.1e-15 85.5 154 37.7
Lj1C312T0 Lonicera japonica HOM05D001401 ORTHO05D006368 2.1e-14 84.0 118 47.5
TAR623G1717 Trochodendron aralioides HOM05D001401 ORTHO05D006368 1.3e-13 81.3 88 58.0
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 4.8e-11 72.8 154 35.1
CDE02G3784 Ceratophyllum demersum HOM05D001401 ORTHO05D002222 1.1e-10 71.6 95 44.2
CBR_g41289 Chara braunii HOM05D004891 ORTHO05D006368 1.3e-08 64.7 174 33.9
SEGI_25677 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 1.7e-08 64.3 169 31.4
BcaC04g23035 Brassica carinata HOM05D001401 ORTHO05D006368 1.1e-07 61.6 80 42.5
FAN15G1877 Fragaria x ananassa HOM05D001401 ORTHO05D006368 7.1e-07 58.9 50 62.0
SEGI_34742 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 7.1e-07 58.9 231 26.0
Psat6g039240 Pisum sativum HOM05D004891 ORTHO05D005997 2.7e-06 57.0 90 37.8
Lalb_Chr01g0014881 Lupinus albus HOM05D004891 ORTHO05D005997 7.9e-06 55.5 81 39.5


User provided reference genes

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