Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B00252 Erythranthe guttata HOM05D005136 ORTHO05D006619 3.9e-73 278.1 146 100.0
SalBow6G6037 Salvia bowleyana HOM05D005136 ORTHO05D006619 3.9e-65 251.5 146 89.0
SGA_v2.0_scaffold106G30693 Striga asiatica HOM05D005136 ORTHO05D006619 1.5e-61 239.6 146 86.3
Oeu014338.1 Olea europaea HOM05D005136 ORTHO05D006619 7.6e-61 237.3 146 84.2
vmacro08119 Vaccinium macrocarpon HOM05D005136 ORTHO05D006619 7.6e-61 237.3 146 82.9
Dinv23543 Davidia involucrata HOM05D005136 ORTHO05D006619 2.2e-60 235.7 146 83.6
Rhsim11G0174400 Rhododendron simsii HOM05D005136 ORTHO05D006619 2.9e-60 235.3 146 82.9
Peaxi162Scf00346g00043 Petunia axillaris HOM05D005136 ORTHO05D006619 3.8e-60 235.0 146 82.2
Dinv42084 Davidia involucrata HOM05D005136 ORTHO05D006619 1.1e-59 233.4 146 82.9
Hund22263 Selenicereus undatus HOM05D005136 ORTHO05D006619 1.4e-59 233.0 146 82.9
MSTRG.16796 Avicennia marina HOM05D005136 ORTHO05D006619 1.9e-59 232.6 146 83.6
CSS0002049 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.2e-58 229.9 146 82.2
CSS0016345 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.2e-58 229.9 146 82.2
CSS0049550 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.2e-58 229.9 146 82.2
Nitab4.5_0009564g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 1.2e-58 229.9 147 81.6
Sopen08g026750 Solanum pennellii HOM05D005136 ORTHO05D006619 2.7e-58 228.8 147 80.3
CAN.G1312.12 Capsicum annuum HOM05D005136 ORTHO05D006619 6.0e-58 227.6 146 81.5
Cfa005022 Carpinus fangiana HOM05D005136 ORTHO05D006619 6.0e-58 227.6 146 80.8
Haze_02365 Corylus avellana HOM05D005136 ORTHO05D006619 6.0e-58 227.6 146 80.8
PGSC0003DMG400026262 Solanum tuberosum HOM05D005136 ORTHO05D006619 6.0e-58 227.6 147 79.6
Cc02_g17760 Coffea canephora HOM05D005136 ORTHO05D006619 7.9e-58 227.3 146 82.9
Cc02_g20820 Coffea canephora HOM05D005136 ORTHO05D006619 7.9e-58 227.3 146 82.9
Solyc08g078240.4 Solanum lycopersicum HOM05D005136 ORTHO05D006619 7.9e-58 227.3 144 80.6
Nn1g02125 Nelumbo nucifera HOM05D005136 ORTHO05D006619 3.0e-57 225.3 144 79.2
AUR62023928 Chenopodium quinoa HOM05D005136 ORTHO05D006619 3.9e-57 224.9 146 81.5
AUR62038311 Chenopodium quinoa HOM05D005136 ORTHO05D006619 3.9e-57 224.9 146 80.8
Ah.01g016850 Amaranthus hybridus HOM05D005136 ORTHO05D006619 5.1e-57 224.6 146 80.8
CSS0025161 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 6.7e-57 224.2 146 80.1
Hma1.2p1_1375F.1_g278970 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 6.7e-57 224.2 147 80.3
Hma1.2p1_3179F.1_g333696 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 6.7e-57 224.2 147 80.3
FvH4_2g08450 Fragaria vesca HOM05D005136 ORTHO05D006619 2.5e-56 222.2 144 78.5
FAN24G0166 Fragaria x ananassa HOM05D005136 ORTHO05D006619 2.5e-56 222.2 144 78.5
FAN27G1698 Fragaria x ananassa HOM05D005136 ORTHO05D006619 4.3e-56 221.5 144 78.5
CiPaw.05G062700 Carya illinoinensis HOM05D005136 ORTHO05D006619 5.6e-56 221.1 146 79.5
FAN15G2434 Fragaria x ananassa HOM05D005136 ORTHO05D006619 5.6e-56 221.1 144 77.8
Manes.17G099700 Manihot esculenta HOM05D005136 ORTHO05D006619 5.6e-56 221.1 147 80.3
RcHm_v2.0_Chr6g0263731 Rosa chinensis HOM05D005136 ORTHO05D006619 5.6e-56 221.1 144 77.8
Eucgr.G00447 Eucalyptus grandis HOM05D005136 ORTHO05D006619 9.6e-56 220.3 146 78.8
Sed0024996 Sechium edule HOM05D005136 ORTHO05D006619 9.6e-56 220.3 147 78.2
Thecc.02G123900 Theobroma cacao HOM05D005136 ORTHO05D006619 9.6e-56 220.3 146 76.7
Potri.004G152700 Populus trichocarpa HOM05D005136 ORTHO05D006619 1.6e-55 219.5 147 77.6
EL10Ac9g21088 Beta vulgaris HOM05D005136 ORTHO05D006619 3.7e-55 218.4 137 83.2
MELO3C020986.2 Cucumis melo HOM05D005136 ORTHO05D006619 3.7e-55 218.4 147 77.6
DCAR_026977 Daucus carota HOM05D005136 ORTHO05D006619 3.7e-55 218.4 146 78.1
Ciclev10029521m.g Citrus clementina HOM05D005136 ORTHO05D006619 4.8e-55 218.0 146 78.1
TAR628G0554 Trochodendron aralioides HOM05D005136 ORTHO05D006619 4.8e-55 218.0 146 76.0
TAR628G1226 Trochodendron aralioides HOM05D005136 ORTHO05D006619 4.8e-55 218.0 146 76.0
ClCG11G004520 Citrullus lanatus HOM05D005136 ORTHO05D006619 8.1e-55 217.2 147 76.9
CsaV3_2G014570 Cucumis sativus L. HOM05D005136 ORTHO05D006619 8.1e-55 217.2 147 76.9
TAR625G1013 Trochodendron aralioides HOM05D005136 ORTHO05D006619 1.1e-54 216.9 146 77.4
Aqoxy5G01670 Aquilegia oxysepala HOM05D005136 ORTHO05D006619 1.4e-54 216.5 149 76.5
Duzib132G0024 Durio zibethinus HOM05D005136 ORTHO05D006619 1.4e-54 216.5 146 76.7
Glyma.04G123300 Glycine max HOM05D005136 ORTHO05D006619 1.4e-54 216.5 149 77.9
Lsat_1_v5_gn_7_89621 Lactuca sativa HOM05D005136 ORTHO05D006619 1.4e-54 216.5 147 77.6
MD05G1068400 Malus domestica HOM05D005136 ORTHO05D006619 1.4e-54 216.5 146 76.7
Cpa.g.sc31.66 Carica papaya HOM05D005136 ORTHO05D006619 1.8e-54 216.1 146 76.7
COL.COLO4_32439 Corchorus olitorius HOM05D005136 ORTHO05D006619 4.0e-54 214.9 147 76.9
MBI16_g37741_MAGBIO Magnolia biondii HOM05D005136 ORTHO05D006619 4.0e-54 214.9 146 78.1
Sc09g0004050 Simmondsia chinensis HOM05D005136 ORTHO05D006619 4.0e-54 214.9 148 76.4
CiPaw.06G136800 Carya illinoinensis HOM05D005136 ORTHO05D006619 9.0e-54 213.8 146 76.0
Lj5P199T42 Lonicera japonica HOM05D005136 ORTHO05D006619 9.0e-54 213.8 148 79.1
Gohir.A12G017900 Gossypium hirsutum HOM05D005136 ORTHO05D006619 2.0e-53 212.6 147 77.6
Gohir.D12G018500 Gossypium hirsutum HOM05D005136 ORTHO05D006619 2.0e-53 212.6 147 77.6
Gorai.008G018800 Gossypium raimondii HOM05D005136 ORTHO05D006619 2.0e-53 212.6 147 77.6
HanXRQChr05g0152051 Helianthus annuus HOM05D005136 ORTHO05D006619 2.6e-53 212.2 147 78.2
MD10G1078600 Malus domestica HOM05D005136 ORTHO05D006619 3.4e-53 211.8 146 75.3
Phvul.002G127500 Phaseolus vulgaris HOM05D005136 ORTHO05D006619 3.4e-53 211.8 149 75.8
VMungo1215G0362 Vigna mungo HOM05D005136 ORTHO05D006619 3.4e-53 211.8 149 75.2
Lj3g0003138 Lotus japonicus HOM05D005136 ORTHO05D006619 4.5e-53 211.5 149 76.5
Prupe.8G100500 Prunus persica HOM05D005136 ORTHO05D006619 4.5e-53 211.5 146 76.7
QL11p043069 Quercus lobata HOM05D005136 ORTHO05D006619 4.5e-53 211.5 145 75.9
HPP92_013432 Vanilla planifolia HOM05D005136 ORTHO05D006619 5.8e-53 211.1 150 74.7
HPP92_027116 Vanilla planifolia HOM05D005136 ORTHO05D006619 5.8e-53 211.1 150 74.7
Atru.chr8.1229 Acer truncatum HOM05D005136 ORTHO05D006619 9.9e-53 210.3 146 76.7
PSO700G0271 Papaver somniferum HOM05D005136 ORTHO05D006619 1.3e-52 209.9 147 76.9
Ca_15377_v3 Cicer arietinum L. HOM05D005136 ORTHO05D006619 1.7e-52 209.5 149 75.2
Psat5g007800 Pisum sativum HOM05D005136 ORTHO05D006619 1.7e-52 209.5 146 76.7
PGR042G3747 Punica granatum HOM05D005136 ORTHO05D006619 2.2e-52 209.1 148 77.0
Medtr3g116260 Medicago truncatula HOM05D005136 ORTHO05D006619 6.4e-52 207.6 151 76.2
Psat5g103000 Pisum sativum HOM05D005136 ORTHO05D006619 1.1e-51 206.8 146 76.0
Lalb_Chr19g0138591 Lupinus albus HOM05D005136 ORTHO05D006619 7.1e-51 204.1 147 73.5
TWI31G0294 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 1.2e-50 203.4 150 74.0
Glyma.09G214900 Glycine max HOM05D005136 ORTHO05D006619 4.6e-50 201.4 141 76.6
Nn1g05055 Nelumbo nucifera HOM05D005136 ORTHO05D006619 4.6e-50 201.4 147 72.8
CANSAT11G0677 Cannabis sativa HOM05D005136 ORTHO05D006619 6.0e-50 201.1 155 72.3
ATR1120G109 Amborella trichopoda HOM05D005136 ORTHO05D006619 1.1e-48 196.8 149 69.8
Lalb_Chr23g0265461 Lupinus albus HOM05D005136 ORTHO05D006619 2.5e-48 195.7 147 66.0
unitig_37.g12818 Utricularia gibba HOM05D005136 ORTHO05D006619 5.6e-48 194.5 152 69.7
Actinidia00512 Actinidia chinensis HOM05D005136 ORTHO05D006619 7.4e-48 194.1 115 86.1
TWI79G0765 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 7.4e-48 194.1 152 70.4
CARHR012080 Cardamine hirsuta HOM05D005136 ORTHO05D006619 1.6e-47 193.0 152 69.7
Aa31LG1G2990 Aethionema arabicum HOM05D005136 ORTHO05D006619 3.7e-47 191.8 150 69.3
AL1G22940 Arabidopsis lyrata HOM05D005136 ORTHO05D006619 1.1e-46 190.3 154 68.8
AT1G11760 Arabidopsis thaliana HOM05D005136 ORTHO05D006619 1.1e-46 190.3 153 66.7
BcaB03g13232 Brassica carinata HOM05D005136 ORTHO05D006619 4.0e-46 188.3 152 68.4
Thhalv10008721m.g Eutrema salsugineum HOM05D005136 ORTHO05D006619 5.3e-46 188.0 157 65.6
Carub.0001s1142 Capsella rubella HOM05D005136 ORTHO05D006619 1.2e-45 186.8 154 67.5
Sp1g10380 Schrenkiella parvula HOM05D005136 ORTHO05D006619 2.0e-45 186.0 153 65.4
Gorai.005G228100 Gossypium raimondii HOM05D005136 ORTHO05D006619 2.6e-45 185.7 146 68.5
THA.LOC104823526 Tarenaya hassleriana HOM05D005136 ORTHO05D006619 3.4e-45 185.3 150 66.7
Gohir.D02G202838 Gossypium hirsutum HOM05D005136 ORTHO05D006619 4.5e-45 184.9 146 68.5
Gohir.A03G179300 Gossypium hirsutum HOM05D005136 ORTHO05D006619 7.6e-45 184.1 146 68.5
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 2.2e-44 182.6 149 66.4
SalBow6G1117 Salvia bowleyana HOM05D005136 ORTHO05D006619 2.9e-44 182.2 105 89.5
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 6.5e-44 181.0 149 65.8
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 3.9e-41 171.8 136 67.6
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 3.9e-41 171.8 136 67.6
Nitab4.5_0002601g0030 Nicotiana tabacum HOM05D005136 ORTHO05D006619 8.7e-41 170.6 109 82.6
ECA236G0931 Erigeron canadensis HOM05D005136 ORTHO05D006619 1.1e-40 170.2 149 64.4
PSO170G5319 Papaver somniferum HOM05D005136 ORTHO05D006619 1.5e-40 169.9 112 80.4
Os10g0548400 Oryza sativa ssp. japonica HOM05D005136 ORTHO05D006619 2.8e-39 165.6 163 57.7
Prupe.5G020100 Prunus persica HOM05D005136 ORTHO05D006619 1.8e-38 162.9 149 59.7
Zm00001eb284000 Zea mays HOM05D005136 ORTHO05D006619 5.3e-38 161.4 152 61.8
EL10Ac7g17776 Beta vulgaris HOM05D005136 ORTHO05D006619 1.5e-37 159.8 134 66.4
TPR.G21542 Trifolium pratense HOM05D005136 ORTHO05D006619 2.9e-36 155.6 149 61.1
CSS0021040 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 3.8e-36 155.2 139 65.5
RcHm_v2.0_Chr6g0264001 Rosa chinensis HOM05D005136 ORTHO05D006619 5.0e-36 154.8 100 78.0
BcaB08g37416 Brassica carinata HOM05D005136 ORTHO05D006619 2.1e-34 149.4 146 58.2
EL10Ac8g18726 Beta vulgaris HOM05D006015 ORTHO05D007816 3.3e-32 142.1 92 78.3
EL10Ac9g21097 Beta vulgaris HOM05D006015 ORTHO05D006619 9.7e-32 140.6 92 77.2
Pp3c10_12480 Physcomitrium patens HOM05D005136 ORTHO05D006619 2.8e-31 139.0 152 53.9
Atru.chr5.2947 Acer truncatum HOM05D005136 ORTHO05D006619 1.2e-29 133.7 89 77.5
SHI23962 Sapria himalayana HOM05D005136 ORTHO05D006619 5.9e-29 131.3 133 57.1
CDE02G3080 Ceratophyllum demersum HOM05D005136 ORTHO05D006619 7.7e-29 131.0 89 73.0
SMO174G0113 Selaginella moellendorffii HOM05D005136 ORTHO05D006619 2.9e-28 129.0 134 53.7
EL10Ac1g02225 Beta vulgaris HOM05D005136 ORTHO05D006619 1.0e-25 120.6 166 47.6
Mapoly0003s0019 Marchantia polymorpha HOM05D005136 ORTHO05D006619 1.8e-25 119.8 125 53.6
Oeu014337.1 Olea europaea HOM05D005136 ORTHO05D006619 2.2e-20 102.8 79 62.0
Psat4g095600 Pisum sativum HOM05D005136 ORTHO05D006619 3.8e-20 102.1 79 63.3
Medtr3g116310 Medicago truncatula HOM05D005136 ORTHO05D006619 5.0e-20 101.7 78 65.4
Sp2g23220 Schrenkiella parvula HOM05D005136 ORTHO05D006619 8.5e-20 100.9 92 58.7
Hma1.2p1_0854F.1_g228935 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 2.1e-18 96.3 71 66.2
Hma1.2p1_2665F.1_g326510 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 2.1e-18 96.3 71 66.2
AagrBONN_evm.TU.Sc2ySwM_369.532 Anthoceros agrestis HOM05D005136 ORTHO05D006619 3.9e-17 92.0 134 39.6
Sc09g0004030 Simmondsia chinensis HOM05D005136 ORTHO05D006619 6.7e-17 91.3 71 69.0
COL.COLO4_32440 Corchorus olitorius HOM05D005136 ORTHO05D006619 1.1e-16 90.5 69 59.4
Gohir.A03G179400 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.5e-16 90.1 69 63.8
Thecc.02G123800 Theobroma cacao HOM05D005136 ORTHO05D006619 1.5e-16 90.1 71 62.0
Gohir.D02G202857 Gossypium hirsutum HOM05D005136 ORTHO05D006619 4.4e-16 88.6 69 63.8
Gorai.005G228200 Gossypium raimondii HOM05D005136 ORTHO05D006619 5.7e-16 88.2 69 62.3
Lj4g0027023 Lotus japonicus HOM05D005136 ORTHO05D006619 2.4e-14 82.8 144 41.0
Nitab4.5_0012262g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 6.5e-12 74.7 72 54.2
Nitab4.5_0002541g0070 Nicotiana tabacum HOM05D005136 ORTHO05D024799 1.9e-11 73.2 72 54.2
CAN.G1435.13 Capsicum annuum HOM05D005136 ORTHO05D024799 9.4e-11 70.9 70 50.0
Os07g0229100 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 2.7e-10 69.3 72 51.4
ECA233G0803 Erigeron canadensis HOM05D005136 ORTHO05D006619 1.5e-08 63.5 122 40.2
Solyc09g082750.1 Solanum lycopersicum HOM05D005136 ORTHO05D024799 4.8e-07 58.5 72 41.7
Peaxi162Scf00316g00313 Petunia axillaris HOM05D005136 ORTHO05D006619 8.2e-07 57.8 51 60.8
HPP92_014777 Vanilla planifolia HOM05D005136 ORTHO05D006619 4.1e-06 55.5 72 38.9


User provided reference genes

Program Settings