Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B00211 Erythranthe guttata HOM05D006691 ORTHO05D007620 1.2e-43 179.5 92 100.0
SalBow6G5689 Salvia bowleyana HOM05D006691 ORTHO05D007620 5.3e-28 127.5 91 75.8
TAR628G0615 Trochodendron aralioides HOM05D006691 ORTHO05D007620 1.9e-17 92.4 92 60.9
Ciclev10030122m.g Citrus clementina HOM05D006691 ORTHO05D007620 2.5e-17 92.0 90 60.0
Eucgr.I01291 Eucalyptus grandis HOM05D006691 ORTHO05D007620 2.5e-17 92.0 92 57.6
Actinidia00546 Actinidia chinensis HOM05D006691 ORTHO05D007620 2.1e-16 89.0 87 56.3
Dinv23490 Davidia involucrata HOM05D006691 ORTHO05D007620 2.8e-16 88.6 94 59.6
Nitab4.5_0003234g0120 Nicotiana tabacum HOM05D006691 ORTHO05D007620 2.8e-16 88.6 89 55.1
Peaxi162Scf00016g00429 Petunia axillaris HOM05D006691 ORTHO05D007620 3.6e-16 88.2 95 56.8
Potri.009G119900 Populus trichocarpa HOM05D006691 ORTHO05D007620 3.6e-16 88.2 95 54.7
Solyc01g109895.1 Solanum lycopersicum HOM05D006691 ORTHO05D007620 6.1e-16 87.4 90 60.0
QL11p045203 Quercus lobata HOM05D006691 ORTHO05D007620 8.0e-16 87.0 93 52.7
Sopen01g052090 Solanum pennellii HOM05D006691 ORTHO05D007620 8.0e-16 87.0 88 62.5
Dinv42040 Davidia involucrata HOM05D006691 ORTHO05D007620 1.4e-15 86.3 93 53.8
GSVIVG01023821001 Vitis vinifera HOM05D006691 ORTHO05D007620 1.8e-15 85.9 101 51.5
PGSC0003DMG400030948 Solanum tuberosum HOM05D006691 ORTHO05D007620 2.3e-15 85.5 88 60.2
Duzib132G0715 Durio zibethinus HOM05D006691 ORTHO05D007620 5.2e-15 84.3 82 57.3
Medtr8g037800 Medicago truncatula HOM05D006691 ORTHO05D007620 8.8e-15 83.6 93 50.5
TWI31G1476 Tripterygium wilfordii HOM05D006691 ORTHO05D007620 8.8e-15 83.6 89 49.4
Nitab4.5_0007454g0010 Nicotiana tabacum HOM05D006691 ORTHO05D007620 1.2e-14 83.2 91 53.8
TWI79G1416 Tripterygium wilfordii HOM05D006691 ORTHO05D007620 1.5e-14 82.8 90 52.2
Psat4g192840 Pisum sativum HOM05D006691 ORTHO05D007620 2.0e-14 82.4 89 51.7
Nitab4.5_0013456g0010 Nicotiana tabacum HOM05D006691 ORTHO05D007620 2.6e-14 82.0 94 55.3
CAN.G1544.5 Capsicum annuum HOM05D006691 ORTHO05D007620 3.4e-14 81.6 90 55.6
Prupe.8G091200 Prunus persica HOM05D006691 ORTHO05D007620 4.4e-14 81.3 93 50.5
TPR.G1848 Trifolium pratense HOM05D006691 ORTHO05D007620 4.4e-14 81.3 95 48.4
Glyma.13G201100 Glycine max HOM05D006691 ORTHO05D007620 7.5e-14 80.5 90 48.9
Lj1g0004010 Lotus japonicus HOM05D006691 ORTHO05D007620 7.5e-14 80.5 91 49.5
MD10G1069300 Malus domestica HOM05D006691 ORTHO05D007620 2.2e-13 79.0 96 52.1
Thecc.02G080700 Theobroma cacao HOM05D006691 ORTHO05D007620 2.2e-13 79.0 89 52.8
Gohir.D13G030800 Gossypium hirsutum HOM05D006691 ORTHO05D007620 2.8e-13 78.6 81 53.1
Gorai.005G245800 Gossypium raimondii HOM05D006691 ORTHO05D007620 2.8e-13 78.6 83 56.6
Gorai.013G035000 Gossypium raimondii HOM05D006691 ORTHO05D007620 2.8e-13 78.6 81 53.1
Duzib248G1522 Durio zibethinus HOM05D006691 ORTHO05D007620 3.7e-13 78.2 83 56.6
CSS0036321 Camellia sinensis var. sinensis HOM05D006691 ORTHO05D007620 4.9e-13 77.8 87 49.4
FAN15G0999 Fragaria x ananassa HOM05D006691 ORTHO05D007620 4.9e-13 77.8 95 49.5
Gohir.A13G032600 Gossypium hirsutum HOM05D006691 ORTHO05D007620 4.9e-13 77.8 81 53.1
CANSAT11G0932 Cannabis sativa HOM05D006691 ORTHO05D007620 6.3e-13 77.4 88 51.1
Gohir.A03G196700 Gossypium hirsutum HOM05D006691 ORTHO05D007620 6.3e-13 77.4 83 54.2
CiPaw.06G132900 Carya illinoinensis HOM05D006691 ORTHO05D007620 8.3e-13 77.0 93 50.5
FvH4_2g09570 Fragaria vesca HOM05D006691 ORTHO05D007620 8.3e-13 77.0 95 49.5
FAN24G2625 Fragaria x ananassa HOM05D006691 ORTHO05D007620 8.3e-13 77.0 95 49.5
MD05G1061400 Malus domestica HOM05D006691 ORTHO05D007620 8.3e-13 77.0 94 51.1
Manes.11G091700 Manihot esculenta HOM05D006691 ORTHO05D007620 8.3e-13 77.0 91 51.6
Lalb_Chr01g0007961 Lupinus albus HOM05D006691 ORTHO05D007620 1.1e-12 76.6 92 47.8
FAN20G2766 Fragaria x ananassa HOM05D006691 ORTHO05D007620 1.4e-12 76.3 96 53.1
Gohir.D02G217900 Gossypium hirsutum HOM05D006691 ORTHO05D007620 1.4e-12 76.3 83 55.4
RcHm_v2.0_Chr6g0265861 Rosa chinensis HOM05D006691 ORTHO05D007620 1.4e-12 76.3 96 52.1
FAN27G2049 Fragaria x ananassa HOM05D006691 ORTHO05D007620 2.4e-12 75.5 95 49.5
Phvul.011G210100 Phaseolus vulgaris HOM05D006691 ORTHO05D007620 2.4e-12 75.5 90 53.3
COL.COLO4_25981 Corchorus olitorius HOM05D006691 ORTHO05D007620 3.1e-12 75.1 83 51.8
THA.LOC104819621 Tarenaya hassleriana HOM05D006691 ORTHO05D007620 4.1e-12 74.7 85 49.4
Nitab4.5_0001413g0050 Nicotiana tabacum HOM05D006691 ORTHO05D007620 7.0e-12 73.9 98 51.0
PSO675G5127 Papaver somniferum HOM05D006691 ORTHO05D007620 1.2e-11 73.2 101 48.5
Rhsim05G0071400 Rhododendron simsii HOM05D006691 ORTHO05D007620 1.6e-11 72.8 88 48.9
Hma1.2p1_0066F.1_g036140 Hydrangea macrophylla HOM05D006691 ORTHO05D007620 2.0e-11 72.4 89 47.2
Lsat_1_v5_gn_7_91560 Lactuca sativa HOM05D006691 ORTHO05D007620 2.0e-11 72.4 86 50.0
CSS0048821 Camellia sinensis var. sinensis HOM05D006691 ORTHO05D007620 2.7e-11 72.0 97 45.4
Cc00_g15110 Coffea canephora HOM05D006691 ORTHO05D007620 2.7e-11 72.0 90 51.1
HanXRQChr04g0127791 Helianthus annuus HOM05D006691 ORTHO05D007620 4.5e-11 71.2 86 52.3
arahy.Tifrunner.gnm1.ann1.43WB82 Arachis hypogaea HOM05D006691 ORTHO05D007620 5.9e-11 70.9 87 52.9
Aqoxy5G01556 Aquilegia oxysepala HOM05D006691 ORTHO05D007620 7.8e-11 70.5 93 45.2
PSO591G0314 Papaver somniferum HOM05D006691 ORTHO05D007620 1.0e-10 70.1 101 49.5
MBI16_g36843_MAGBIO Magnolia biondii HOM05D006691 ORTHO05D007620 1.3e-10 69.7 101 43.6
CSS0004191 Camellia sinensis var. sinensis HOM05D006691 ORTHO05D007620 1.7e-10 69.3 87 44.8
Lj3g0013236 Lotus japonicus HOM05D006691 ORTHO05D007620 1.7e-10 69.3 89 48.3
Manes.04G087299 Manihot esculenta HOM05D006691 ORTHO05D007620 1.7e-10 69.3 90 46.7
ATR0585G050 Amborella trichopoda HOM05D006691 ORTHO05D007620 5.0e-10 67.8 85 45.9
MELO3C023320.2 Cucumis melo HOM05D006691 ORTHO05D007620 5.0e-10 67.8 87 47.1
CsaV3_2G015000 Cucumis sativus L. HOM05D006691 ORTHO05D007620 6.6e-10 67.4 93 47.3
PGR042G3893 Punica granatum HOM05D006691 ORTHO05D007620 1.1e-09 66.6 95 47.4
DCAR_001560 Daucus carota HOM05D006691 ORTHO05D007620 1.9e-09 65.9 86 44.2
Peaxi162Scf00684g00234 Petunia axillaris HOM05D006691 ORTHO05D007620 3.3e-09 65.1 90 46.7
Hund06253 Selenicereus undatus HOM05D006691 ORTHO05D007620 4.3e-09 64.7 96 42.7
Carub.0007s0568 Capsella rubella HOM05D006691 ORTHO05D007620 5.6e-09 64.3 88 45.5
Sed0023451 Sechium edule HOM05D006691 ORTHO05D007620 5.6e-09 64.3 101 47.5
ClCG11G004170 Citrullus lanatus HOM05D006691 ORTHO05D007620 9.5e-09 63.5 80 46.2
AT2G16385 Arabidopsis thaliana HOM05D006691 ORTHO05D007620 1.2e-08 63.2 87 42.5
AL3G52540 Arabidopsis lyrata HOM05D006691 ORTHO05D007620 2.1e-08 62.4 84 42.9
CiPaw.05G069300 Carya illinoinensis HOM05D006691 ORTHO05D007620 3.6e-08 61.6 33 75.8
CiPaw.05G069400 Carya illinoinensis HOM05D006691 ORTHO05D007620 3.6e-08 61.6 33 75.8
DCAR_004781 Daucus carota HOM05D006691 ORTHO05D007620 3.6e-08 61.6 36 75.0
Thhalv10026702m.g Eutrema salsugineum HOM05D006691 ORTHO05D007620 3.6e-08 61.6 88 44.3
CiPaw.05G069100 Carya illinoinensis HOM05D006691 ORTHO05D007620 1.0e-07 60.1 32 78.1
arahy.Tifrunner.gnm1.ann1.D742FH Arachis hypogaea HOM05D006691 ORTHO05D007620 1.4e-07 59.7 83 44.6
MBI10_g00752_MAGBIO Magnolia biondii HOM05D006691 ORTHO05D007620 1.4e-07 59.7 59 54.2
CARHR242800 Cardamine hirsuta HOM05D006691 ORTHO05D007620 1.8e-07 59.3 83 43.4
A01p03880 Brassica napus HOM05D006691 ORTHO05D007620 2.3e-07 58.9 88 44.3
HanXRQChr16g0505401 Helianthus annuus HOM05D006691 ORTHO05D007620 2.3e-07 58.9 92 42.4
BcaNung00683 Brassica carinata HOM05D006691 ORTHO05D007620 3.0e-07 58.5 88 44.3
C01p04190 Brassica napus HOM05D006691 ORTHO05D007620 3.0e-07 58.5 88 44.3
BraA01t00375Z Brassica rapa HOM05D006691 ORTHO05D007620 3.0e-07 58.5 88 44.3
SGA_v2.0_scaffold58G20505 Striga asiatica HOM05D001345 ORTHO05D001190 3.0e-07 58.5 91 42.9
AL7G16600 Arabidopsis lyrata HOM05D006691 ORTHO05D007620 5.2e-07 57.8 88 40.9
BcaNung04921 Brassica carinata HOM05D006691 ORTHO05D007620 5.2e-07 57.8 88 43.2
A03p63030 Brassica napus HOM05D006691 ORTHO05D007620 5.2e-07 57.8 83 43.4
BraA03t15377Z Brassica rapa HOM05D006691 ORTHO05D007620 5.2e-07 57.8 83 43.4
Sc18g0005100 Simmondsia chinensis HOM05D006691 ORTHO05D007620 5.2e-07 57.8 97 38.1
Glyma.12G235600 Glycine max HOM05D006691 ORTHO05D007620 6.8e-07 57.4 69 43.5
unitig_46.g18506 Utricularia gibba HOM05D055258 ORTHO05D007620 6.8e-07 57.4 69 49.3
unitig_47.g30752 Utricularia gibba HOM05D055258 ORTHO05D007620 6.8e-07 57.4 69 49.3
Eucgr.G01694 Eucalyptus grandis HOM05D006691 ORTHO05D007620 1.2e-06 56.6 104 38.5
C07p60660 Brassica napus HOM05D006691 ORTHO05D007620 2.0e-06 55.8 83 38.6
BolC7t46496H Brassica oleracea HOM05D006691 ORTHO05D007620 2.0e-06 55.8 83 38.6
Os11g0323860 Oryza sativa ssp. japonica HOM05D035858 ORTHO05D007620 2.0e-06 55.8 83 44.6
Os11g0412484 Oryza sativa ssp. japonica HOM05D035858 ORTHO05D007620 2.0e-06 55.8 83 44.6
Zm00001eb304080 Zea mays HOM05D006691 ORTHO05D007620 2.0e-06 55.8 79 41.8
HPP92_017191 Vanilla planifolia HOM05D006691 ORTHO05D007620 4.4e-06 54.7 97 38.1
HPP92_010634 Vanilla planifolia HOM05D006691 ORTHO05D007620 9.8e-06 53.5 79 36.7


User provided reference genes

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