Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 6.9e-50 200.3 98 100.0
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 4.0e-21 104.8 73 72.6
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 4.0e-21 104.8 57 86.0
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 6.7e-21 104.0 57 87.7
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 6.7e-21 104.0 57 89.5
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 8.8e-21 103.6 57 87.7
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 1.1e-20 103.2 57 87.7
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 2.0e-20 102.4 57 86.0
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 2.0e-20 102.4 51 98.0
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 4.4e-20 101.3 57 82.5
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 7.4e-20 100.5 54 88.9
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 7.4e-20 100.5 51 96.1
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 9.7e-20 100.1 51 94.1
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 1.7e-19 99.4 57 80.7
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 1.7e-19 99.4 57 84.2
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 2.2e-19 99.0 55 83.6
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 2.2e-19 99.0 55 83.6
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 2.2e-19 99.0 55 83.6
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 2.2e-19 99.0 55 83.6
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 2.2e-19 99.0 55 83.6
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 2.2e-19 99.0 57 80.7
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 2.2e-19 99.0 57 80.7
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 2.2e-19 99.0 54 88.9
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 3.7e-19 98.2 55 83.6
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 4.8e-19 97.8 54 85.2
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 6.3e-19 97.4 56 82.1
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 6.3e-19 97.4 72 68.1
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 6.3e-19 97.4 57 80.7
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 6.3e-19 97.4 55 81.8
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 8.2e-19 97.1 57 80.7
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 8.2e-19 97.1 57 82.5
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 8.2e-19 97.1 58 82.8
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 1.1e-18 96.7 57 77.2
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 1.1e-18 96.7 55 83.6
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.1e-18 96.7 55 81.8
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.1e-18 96.7 55 83.6
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 1.1e-18 96.7 57 78.9
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 1.4e-18 96.3 58 84.5
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.4e-18 96.3 55 83.6
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 1.4e-18 96.3 56 80.4
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 1.4e-18 96.3 57 80.7
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 1.8e-18 95.9 57 75.4
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 1.8e-18 95.9 57 75.4
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 1.8e-18 95.9 54 85.2
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 2.4e-18 95.5 51 90.2
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 2.4e-18 95.5 55 80.0
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 2.4e-18 95.5 55 80.0
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 3.1e-18 95.1 54 83.3
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 3.1e-18 95.1 54 83.3
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 3.1e-18 95.1 54 83.3
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 3.1e-18 95.1 58 82.8
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 3.1e-18 95.1 58 81.0
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 4.1e-18 94.7 51 88.2
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 4.1e-18 94.7 55 80.0
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 4.1e-18 94.7 58 82.8
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 4.1e-18 94.7 53 84.9
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 4.1e-18 94.7 53 84.9
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 4.1e-18 94.7 57 75.4
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 4.1e-18 94.7 53 84.9
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 5.3e-18 94.4 54 83.3
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 5.3e-18 94.4 54 83.3
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 5.3e-18 94.4 53 84.9
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 5.3e-18 94.4 62 77.4
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 5.3e-18 94.4 55 83.6
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 5.3e-18 94.4 54 81.5
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 7.0e-18 94.0 55 81.8
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 9.1e-18 93.6 57 75.4
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 9.1e-18 93.6 56 78.6
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 9.1e-18 93.6 53 83.0
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 9.1e-18 93.6 57 78.9
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 1.2e-17 93.2 53 84.9
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 1.2e-17 93.2 54 81.5
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.2e-17 93.2 53 83.0
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.2e-17 93.2 53 83.0
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 1.2e-17 93.2 54 81.5
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 1.6e-17 92.8 51 86.3
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 1.6e-17 92.8 54 81.5
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 1.6e-17 92.8 54 81.5
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 2.0e-17 92.4 55 78.2
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 2.0e-17 92.4 55 78.2
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 2.6e-17 92.0 53 81.1
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 2.6e-17 92.0 51 84.3
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 2.6e-17 92.0 54 79.6
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 2.6e-17 92.0 54 79.6
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 2.6e-17 92.0 57 77.2
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 3.5e-17 91.7 55 76.4
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 3.5e-17 91.7 54 81.5
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 3.5e-17 91.7 53 79.2
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 3.5e-17 91.7 54 77.8
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 4.5e-17 91.3 55 76.4
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 4.5e-17 91.3 55 76.4
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 4.5e-17 91.3 55 76.4
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 4.5e-17 91.3 55 76.4
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 4.5e-17 91.3 55 76.4
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 4.5e-17 91.3 55 76.4
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 4.5e-17 91.3 55 76.4
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 4.5e-17 91.3 55 76.4
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 4.5e-17 91.3 55 76.4
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 4.5e-17 91.3 55 76.4
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 4.5e-17 91.3 55 76.4
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 4.5e-17 91.3 58 77.6
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 5.9e-17 90.9 58 79.3
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 5.9e-17 90.9 51 82.4
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 7.7e-17 90.5 51 84.3
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 7.7e-17 90.5 51 84.3
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 7.7e-17 90.5 51 84.3
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 7.7e-17 90.5 54 79.6
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 1.0e-16 90.1 55 76.4
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 1.3e-16 89.7 55 74.5
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 1.3e-16 89.7 55 74.5
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 1.3e-16 89.7 55 74.5
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 1.3e-16 89.7 55 74.5
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 1.3e-16 89.7 55 74.5
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 1.7e-16 89.4 53 77.4
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 2.2e-16 89.0 54 74.1
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 2.2e-16 89.0 54 75.9
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 2.9e-16 88.6 55 72.7
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 2.9e-16 88.6 55 72.7
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 2.9e-16 88.6 55 76.4
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 2.9e-16 88.6 58 75.9
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.1e-15 86.7 53 77.4
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 3.2e-15 85.1 57 73.7
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 1.2e-14 83.2 55 70.9
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.6e-14 82.8 53 73.6
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 1.0e-13 80.1 56 69.6
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 3.0e-13 78.6 44 86.4
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 5.7e-12 74.3 72 55.6
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 4.8e-11 71.2 57 57.9
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 8.3e-11 70.5 41 82.9
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 2.7e-09 65.5 55 49.1
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 1.0e-08 63.5 55 50.9
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 3.2e-07 58.5 49 57.1
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 7.2e-07 57.4 52 55.8
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 7.2e-07 57.4 52 55.8
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 1.2e-06 56.6 31 74.2
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 1.2e-06 56.6 31 74.2
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-06 55.8 54 44.4


User provided reference genes

Program Settings