Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B00006 Erythranthe guttata HOM05D005203 ORTHO05D006383 3.3e-261 904.4 442 100.0
MSTRG.19946 Avicennia marina HOM05D005203 ORTHO05D006383 7.3e-232 807.0 441 86.8
Dinv41871 Davidia involucrata HOM05D005203 ORTHO05D006383 8.6e-217 756.9 441 80.5
CSS0012413 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 6.2e-215 750.7 441 78.9
Solyc01g112240.4 Solanum lycopersicum HOM05D005203 ORTHO05D006383 1.4e-214 749.6 441 79.6
Dinv14173 Davidia involucrata HOM05D005203 ORTHO05D006383 1.3e-212 743.0 474 74.7
Glyma.06G000300 Glycine max HOM05D005203 ORTHO05D006383 2.9e-212 741.9 441 78.5
Glyma.04G000400 Glycine max HOM05D005203 ORTHO05D006383 1.1e-211 740.0 441 77.8
Peaxi162Scf00362g00132 Petunia axillaris HOM05D005203 ORTHO05D006383 9.2e-211 736.9 450 77.6
Cc09_g10810 Coffea canephora HOM05D005203 ORTHO05D006383 1.7e-209 732.6 451 78.7
Lj1g0021981 Lotus japonicus HOM05D005203 ORTHO05D006383 1.7e-209 732.6 441 77.8
Prupe.8G179800 Prunus persica HOM05D005203 ORTHO05D006383 3.0e-209 731.9 441 77.3
CiPaw.06G115500 Carya illinoinensis HOM05D005203 ORTHO05D006383 8.7e-209 730.3 441 76.2
CsaV3_7G001910 Cucumis sativus L. HOM05D005203 ORTHO05D006383 8.7e-209 730.3 442 76.9
CANSAT25G3783 Cannabis sativa HOM05D005203 ORTHO05D006383 1.9e-208 729.2 441 76.9
Thecc.02G146000 Theobroma cacao HOM05D005203 ORTHO05D006383 1.9e-208 729.2 441 75.7
MELO3C013249.2 Cucumis melo HOM05D005203 ORTHO05D006383 1.2e-207 726.5 442 76.7
Ciclev10028418m.g Citrus clementina HOM05D005203 ORTHO05D006383 4.0e-206 721.5 436 76.6
Potri.009G168000 Populus trichocarpa HOM05D005203 ORTHO05D006383 1.5e-205 719.5 441 75.7
TWI75G1664 Tripterygium wilfordii HOM05D005203 ORTHO05D006383 3.4e-205 718.4 436 75.2
Ca_15273_v3 Cicer arietinum L. HOM05D005203 ORTHO05D006383 7.6e-205 717.2 441 76.4
Gohir.D12G014000 Gossypium hirsutum HOM05D005203 ORTHO05D006383 8.4e-204 713.8 441 74.1
Phvul.009G115600 Phaseolus vulgaris HOM05D005203 ORTHO05D006383 1.4e-203 713.0 441 75.7
FvH4_2g16770 Fragaria vesca HOM05D005203 ORTHO05D006383 4.2e-203 711.4 441 75.5
Nn6g31681 Nelumbo nucifera HOM05D005203 ORTHO05D006383 4.2e-203 711.4 438 75.6
Gohir.A12G013200 Gossypium hirsutum HOM05D005203 ORTHO05D006383 2.1e-202 709.1 441 73.7
Manes.11G110000 Manihot esculenta HOM05D005203 ORTHO05D006383 2.1e-202 709.1 441 75.1
Potri.004G206900 Populus trichocarpa HOM05D005203 ORTHO05D006383 3.5e-202 708.4 442 74.9
MD10G1141600 Malus domestica HOM05D005203 ORTHO05D006383 6.0e-202 707.6 441 75.7
PSO210G4213 Papaver somniferum HOM05D005203 ORTHO05D006383 7.8e-202 707.2 441 73.5
TPR.G38553 Trifolium pratense HOM05D005203 ORTHO05D006383 7.8e-202 707.2 441 75.3
Gorai.008G014000 Gossypium raimondii HOM05D005203 ORTHO05D006383 1.3e-201 706.4 442 73.5
FAN15G3115 Fragaria x ananassa HOM05D005203 ORTHO05D006383 3.0e-201 705.3 441 74.8
PSO170G2598 Papaver somniferum HOM05D005203 ORTHO05D006383 5.1e-201 704.5 441 73.0
Aqoxy5G00999 Aquilegia oxysepala HOM05D005203 ORTHO05D006383 5.6e-200 701.0 436 75.0
Sp7g37480 Schrenkiella parvula HOM05D005203 ORTHO05D006383 2.1e-199 699.1 441 73.7
AT4G38240 Arabidopsis thaliana HOM05D005203 ORTHO05D006383 8.1e-199 697.2 441 74.4
HanXRQChr15g0476431 Helianthus annuus HOM05D005203 ORTHO05D006383 8.1e-199 697.2 443 73.8
PGR042G0992 Punica granatum HOM05D005203 ORTHO05D006383 1.1e-198 696.8 440 74.5
ECA246G3822 Erigeron canadensis HOM05D005203 ORTHO05D006383 1.4e-198 696.4 436 74.3
Carub.0007s0018 Capsella rubella HOM05D005203 ORTHO05D006383 4.0e-198 694.9 441 73.9
Cfa005369 Carpinus fangiana HOM05D005203 ORTHO05D006383 4.0e-198 694.9 441 75.1
Nitab4.5_0000783g0090 Nicotiana tabacum HOM05D005203 ORTHO05D006383 6.9e-198 694.1 465 73.5
Eucgr.H04989 Eucalyptus grandis HOM05D005203 ORTHO05D006383 9.0e-198 693.7 441 72.3
GSVIVG01002028001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.2e-197 693.3 441 74.6
ClCG02G003410 Citrullus lanatus HOM05D005203 ORTHO05D006383 7.6e-197 690.6 447 74.5
THA.LOC104824732 Tarenaya hassleriana HOM05D005203 ORTHO05D006383 1.3e-196 689.9 442 72.6
MD05G1138700 Malus domestica HOM05D005203 ORTHO05D006383 1.7e-196 689.5 441 74.1
RcHm_v2.0_Chr6g0280891 Rosa chinensis HOM05D005203 ORTHO05D006383 1.4e-195 686.4 441 73.5
Sed0018804 Sechium edule HOM05D005203 ORTHO05D006383 1.4e-195 686.4 442 73.1
AL7G10160 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 1.9e-195 686.0 441 73.0
ECA234G1180 Erigeron canadensis HOM05D005203 ORTHO05D006383 2.4e-195 685.6 434 74.2
CARHR294030 Cardamine hirsuta HOM05D005203 ORTHO05D006383 2.1e-194 682.6 442 72.9
BolC7t46794H Brassica oleracea HOM05D005203 ORTHO05D006383 1.0e-193 680.2 462 70.3
Atru.chr5.3533 Acer truncatum HOM05D005203 ORTHO05D006383 1.3e-193 679.9 445 72.4
Lsat_1_v5_gn_3_48560 Lactuca sativa HOM05D005203 ORTHO05D006383 3.0e-193 678.7 441 73.2
SalBow1G5214 Salvia bowleyana HOM05D005203 ORTHO05D006383 3.9e-193 678.3 422 78.0
FAN27G1508 Fragaria x ananassa HOM05D005203 ORTHO05D006383 3.3e-192 675.2 437 73.2
arahy.Tifrunner.gnm1.ann1.H6WGQ1 Arachis hypogaea HOM05D005203 ORTHO05D006383 3.7e-191 671.8 443 73.8
HanXRQChr10g0298431 Helianthus annuus HOM05D005203 ORTHO05D006383 3.4e-189 665.2 438 72.8
Lalb_Chr08g0246871 Lupinus albus HOM05D005203 ORTHO05D006383 6.4e-188 661.0 437 73.0
BraA06t27778Z Brassica rapa HOM05D005203 ORTHO05D006383 1.9e-187 659.4 451 70.1
FAN24G3349 Fragaria x ananassa HOM05D005203 ORTHO05D006383 1.9e-187 659.4 437 72.3
Lsat_1_v5_gn_4_71380 Lactuca sativa HOM05D005203 ORTHO05D006383 4.2e-187 658.3 434 70.5
Sc18g0005820 Simmondsia chinensis HOM05D005203 ORTHO05D006383 1.6e-186 656.4 401 75.1
BNapus_Darmor_BZH_scaffold_146p00070 Brassica napus HOM05D005203 ORTHO05D006383 7.9e-186 654.1 442 70.8
Thhalv10025208m.g Eutrema salsugineum HOM05D005203 ORTHO05D006383 2.1e-183 646.0 441 69.6
MBI05_g33297_MAGBIO Magnolia biondii HOM05D005203 ORTHO05D006383 4.0e-182 641.7 418 73.2
Os02g0832800 Oryza sativa ssp. japonica HOM05D005203 ORTHO05D006383 1.7e-180 636.3 443 68.6
Actinidia20576 Actinidia chinensis HOM05D005203 ORTHO05D006383 7.9e-178 627.5 416 71.6
Psat5g000480 Pisum sativum HOM05D005203 ORTHO05D006383 1.5e-173 613.2 360 77.5
arahy.Tifrunner.gnm1.ann1.Z16TJ0 Arachis hypogaea HOM05D005203 ORTHO05D006383 7.7e-173 610.9 443 68.8
CiPaw.05G093000 Carya illinoinensis HOM05D005203 ORTHO05D006383 2.9e-172 609.0 464 65.3
CSS0022527 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 2.1e-170 602.8 388 72.9
CSS0021914 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 2.7e-170 602.4 388 72.7
SMO201G0157 Selaginella moellendorffii HOM05D005203 ORTHO05D006383 1.8e-169 599.7 438 65.8
Cpa.g.c28580 Carica papaya HOM05D005203 ORTHO05D006383 2.0e-168 596.3 441 65.8
BcaNung01996 Brassica carinata HOM05D005203 ORTHO05D006383 3.3e-168 595.5 447 66.4
vmacro02339 Vaccinium macrocarpon HOM05D005203 ORTHO05D006383 7.4e-168 594.3 653 49.8
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 8.2e-167 590.9 411 69.1
Eucgr.L00584 Eucalyptus grandis HOM05D005203 ORTHO05D006383 2.0e-165 586.3 341 76.2
Zm00001eb421090 Zea mays HOM05D005203 ORTHO05D006383 4.5e-165 585.1 384 71.6
SGA_v2.0_scaffold399G50809 Striga asiatica HOM05D005203 ORTHO05D006383 1.6e-162 576.6 499 62.9
Oeu006117.1 Olea europaea HOM05D005203 ORTHO05D006383 1.7e-159 566.6 350 77.4
Haze_02001 Corylus avellana HOM05D005203 ORTHO05D006383 1.1e-155 553.9 349 74.8
Pp3c22_17330 Physcomitrium patens HOM05D005203 ORTHO05D006383 7.0e-150 534.6 440 60.7
Mapoly0041s0049 Marchantia polymorpha HOM05D005203 ORTHO05D006383 3.8e-148 528.9 437 57.7
Sabra09G0130500 Salix brachista HOM05D005203 ORTHO05D006383 8.5e-148 527.7 440 60.7
DCAR_026076 Daucus carota HOM05D005203 ORTHO05D006383 9.4e-139 497.7 389 63.5
Sabra04G0139200 Salix brachista HOM05D005203 ORTHO05D006383 7.5e-136 488.0 433 58.4
AagrBONN_evm.TU.Sc2ySwM_362.2915 Anthoceros agrestis HOM05D005203 ORTHO05D006383 1.3e-135 487.3 444 57.0
Aa31LG1G14200 Aethionema arabicum HOM05D005203 ORTHO05D006383 6.3e-135 485.0 434 58.1
Lj5A171G136 Lonicera japonica HOM05D005203 ORTHO05D006383 5.4e-134 481.9 285 80.4
Cfa005368 Carpinus fangiana HOM05D005203 ORTHO05D006383 1.2e-133 480.7 339 69.6
Rhsim11G0198000 Rhododendron simsii HOM05D005203 ORTHO05D006383 1.0e-132 477.6 382 65.2
HPP92_004948 Vanilla planifolia HOM05D005203 ORTHO05D006383 1.7e-132 476.9 441 54.2
Sopen01g054300 Solanum pennellii HOM05D005203 ORTHO05D006383 1.5e-131 473.8 285 80.0
HPP92_022155 Vanilla planifolia HOM05D005203 ORTHO05D006383 1.5e-131 473.8 436 55.0
QL11p056319 Quercus lobata HOM05D005203 ORTHO05D006383 2.8e-127 459.5 281 76.9
VMungo1309G0298 Vigna mungo HOM05D005203 ORTHO05D006383 1.1e-126 457.6 285 76.1
Medtr3g118520 Medicago truncatula HOM05D005203 ORTHO05D006383 1.8e-126 456.8 285 76.5
Pp3c12_4490 Physcomitrium patens HOM05D005203 ORTHO05D006383 4.1e-126 455.7 365 58.6
TAR376G0977 Trochodendron aralioides HOM05D005203 ORTHO05D006383 1.4e-121 440.7 441 52.4
EL10Ac9g21529 Beta vulgaris HOM05D005203 ORTHO05D006383 3.7e-119 432.6 441 53.5
AUR62013174 Chenopodium quinoa HOM05D005203 ORTHO05D006383 1.5e-115 420.6 446 50.9
ATR0807G194 Amborella trichopoda HOM05D005203 ORTHO05D006383 4.4e-112 409.1 286 67.8
CBR_g40811 Chara braunii HOM05D005203 ORTHO05D006383 4.9e-111 405.6 449 46.3
Hund06364 Selenicereus undatus HOM05D005203 ORTHO05D006383 2.5e-107 393.3 433 50.3
COL.COLO4_19776 Corchorus olitorius HOM05D005203 ORTHO05D006383 9.5e-107 391.3 441 49.2
PGSC0003DMG402014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 1.6e-106 390.6 213 86.4
CAN.G1725.2 Capsicum annuum HOM05D005203 ORTHO05D006383 2.8e-106 389.8 213 85.9
CDE07G0143 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 1.1e-105 387.9 289 64.4
AUR62010173 Chenopodium quinoa HOM05D005203 ORTHO05D006383 4.3e-99 365.9 441 46.3
TAR628G1330 Trochodendron aralioides HOM05D005203 ORTHO05D006383 6.0e-93 345.5 418 45.9
MCO10G329 Micromonas commoda HOM05D005203 ORTHO05D006383 5.3e-89 332.4 338 47.9
CSS0033501 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.5e-72 277.7 172 76.2
CSS0046634 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.5e-72 277.7 172 76.2
CSS0007702 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 4.9e-71 272.7 163 77.3
Eucgr.L00583 Eucalyptus grandis HOM05D005203 ORTHO05D006383 4.2e-70 269.6 152 80.9
Ah.01g009970 Amaranthus hybridus HOM05D005203 ORTHO05D006383 3.8e-63 246.5 187 63.1
ATR0807G110 Amborella trichopoda HOM05D005203 ORTHO05D006383 1.0e-60 238.4 152 69.1
QL11p056323 Quercus lobata HOM05D005203 ORTHO05D006383 5.3e-49 199.5 123 73.2
Medtr3g118525 Medicago truncatula HOM05D005203 ORTHO05D006383 2.6e-48 197.2 126 70.6
VMungo1309G1049 Vigna mungo HOM05D005203 ORTHO05D006383 2.6e-48 197.2 126 69.8
Eucgr.H04987 Eucalyptus grandis HOM05D005203 ORTHO05D006383 3.2e-46 190.3 126 65.1
MCO01G683 Micromonas commoda HOM05D005203 ORTHO05D006383 4.2e-46 189.9 292 36.6
CDE07G2075 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 1.8e-44 184.5 123 66.7
Lj5A171G135 Lonicera japonica HOM05D005203 ORTHO05D006383 4.4e-43 179.9 127 66.9
GSVIVG01002907001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.1e-41 175.3 95 86.3
Nitab4.5_0010601g0030 Nicotiana tabacum HOM05D005203 ORTHO05D006383 6.5e-39 166.0 174 52.9
CANSAT78G0806 Cannabis sativa HOM05D005203 ORTHO05D006383 4.7e-37 159.8 105 73.3
AL7G13060 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 5.7e-35 152.9 112 67.0
Sc18g0005790 Simmondsia chinensis HOM05D005203 ORTHO05D006383 1.2e-29 135.2 98 59.2
PGSC0003DMG403014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 4.0e-28 130.2 80 68.8
Sed0000358 Sechium edule HOM05D005203 ORTHO05D006383 1.1e-25 122.1 108 55.6
SEGI_16108 Sequoiadendron giganteum HOM05D005203 ORTHO05D006383 7.0e-17 92.8 77 61.0
AL6G14740 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 3.5e-16 90.5 45 91.1
CAN.G1725.1 Capsicum annuum HOM05D005203 ORTHO05D006383 3.5e-16 90.5 66 69.7
PGSC0003DMG401014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 3.8e-15 87.0 69 65.2
CAN.G533.11 Capsicum annuum HOM05D005203 ORTHO05D006383 9.5e-14 82.4 48 72.9
GSVIVG01002825001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.6e-13 81.6 69 59.4
EL10Ac1g01043 Beta vulgaris HOM05D005203 ORTHO05D006383 2.9e-10 70.9 31 90.3


User provided reference genes

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