Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.A01209 Erythranthe guttata HOM05D033806 ORTHO05D010540 6.5e-97 357.8 245 100.0
Migut.A01192 Erythranthe guttata HOM05D033806 ORTHO05D010540 1.5e-82 310.1 245 87.3
Migut.A01074 Erythranthe guttata HOM05D033806 ORTHO05D010540 5.6e-40 168.7 114 80.7
Migut.E00336 Erythranthe guttata HOM05D007283 ORTHO05D010540 2.1e-15 87.0 239 32.6
Oeu039272.1 Olea europaea HOM05D007283 ORTHO05D010540 9.3e-11 71.6 91 49.5
Oeu039277.1 Olea europaea HOM05D007283 ORTHO05D010540 4.6e-10 69.3 86 51.2
SalBow8G2743 Salvia bowleyana HOM05D007283 ORTHO05D010540 8.7e-09 65.1 49 69.4
MSTRG.13529 Avicennia marina HOM05D007283 ORTHO05D010540 3.3e-08 63.2 96 46.9
Migut.E00337 Erythranthe guttata HOM05D007283 ORTHO05D010540 4.3e-08 62.8 225 28.0
MSTRG.2237 Avicennia marina HOM05D007283 ORTHO05D010540 1.3e-07 61.2 80 53.8
DCAR_013121 Daucus carota HOM05D000233 ORTHO05D000020 1.3e-07 61.2 92 43.5
Nitab4.5_0000874g0090 Nicotiana tabacum HOM05D007283 ORTHO05D010540 2.8e-07 60.1 227 28.6
Cc05_g13430 Coffea canephora HOM05D007283 ORTHO05D010540 3.6e-07 59.7 116 37.9
TWI38G1607 Tripterygium wilfordii HOM05D000233 ORTHO05D000020 3.6e-07 59.7 97 42.3
CSS0041210 Camellia sinensis var. sinensis HOM05D000245 ORTHO05D000020 4.8e-07 59.3 95 41.1
HanXRQChr17g0561861 Helianthus annuus HOM05D000233 ORTHO05D000020 4.8e-07 59.3 93 46.2
unitig_62.g23328 Utricularia gibba HOM05D000233 ORTHO05D000020 4.8e-07 59.3 81 45.7
CAN.G986.47 Capsicum annuum HOM05D000497 ORTHO05D000020 6.2e-07 58.9 52 59.6
HanXRQChr04g0123821 Helianthus annuus HOM05D000233 ORTHO05D000020 6.2e-07 58.9 79 48.1
TPR.G22651 Trifolium pratense HOM05D000233 ORTHO05D000020 6.2e-07 58.9 85 47.1
Medtr2g105380 Medicago truncatula HOM05D000245 ORTHO05D000020 8.1e-07 58.5 88 45.5
Atru.chr6.2945 Acer truncatum HOM05D000233 ORTHO05D000020 1.1e-06 58.2 80 47.5
HanXRQChr06g0173671 Helianthus annuus HOM05D000245 ORTHO05D000020 1.1e-06 58.2 86 45.3
Hma1.2p1_0229F.1_g097000 Hydrangea macrophylla HOM05D000245 ORTHO05D000020 1.1e-06 58.2 88 43.2
Lsat_1_v5_gn_7_20840 Lactuca sativa HOM05D000233 ORTHO05D000020 1.1e-06 58.2 67 52.2
AUR62008711 Chenopodium quinoa HOM05D000245 ORTHO05D000020 1.4e-06 57.8 61 52.5
AUR62043487 Chenopodium quinoa HOM05D000245 ORTHO05D000020 1.4e-06 57.8 61 52.5
TWI63G0369 Tripterygium wilfordii HOM05D000245 ORTHO05D000020 1.4e-06 57.8 94 39.4
unitig_8.g3979 Utricularia gibba HOM05D000497 ORTHO05D010540 1.4e-06 57.8 249 26.5
EL10Ac7g17571 Beta vulgaris HOM05D000245 ORTHO05D000020 3.1e-06 56.6 62 51.6
Lsat_1_v5_gn_3_59401 Lactuca sativa HOM05D000497 ORTHO05D002300 3.1e-06 56.6 95 41.1
Sed0019113 Sechium edule HOM05D000233 ORTHO05D000020 3.1e-06 56.6 88 47.7
Hund05450 Selenicereus undatus HOM05D000245 ORTHO05D000020 3.1e-06 56.6 80 43.8
Hund18647 Selenicereus undatus HOM05D000245 ORTHO05D000020 3.1e-06 56.6 76 44.7
SEGI_25340 Sequoiadendron giganteum HOM05D000245 ORTHO05D000020 3.1e-06 56.6 115 37.4
Sc17g0003030 Simmondsia chinensis HOM05D000245 ORTHO05D000020 3.1e-06 56.6 85 43.5
Solyc04g009450.1 Solanum lycopersicum HOM05D007283 ORTHO05D033971 3.1e-06 56.6 56 53.6
Sopen04g004580 Solanum pennellii HOM05D007283 ORTHO05D033971 3.1e-06 56.6 56 53.6
TWI14G0568 Tripterygium wilfordii HOM05D000245 ORTHO05D000020 3.1e-06 56.6 88 42.0
HPP92_012421 Vanilla planifolia HOM05D000233 ORTHO05D000020 3.1e-06 56.6 109 41.3
Zm00001eb374110 Zea mays HOM05D000245 ORTHO05D000020 3.1e-06 56.6 73 46.6
MSTRG.22524 Avicennia marina HOM05D000245 ORTHO05D000020 4.0e-06 56.2 85 43.5
CAN.G1861.8 Capsicum annuum HOM05D007283 ORTHO05D033971 4.0e-06 56.2 48 60.4
Glyma.06G236400 Glycine max HOM05D000233 ORTHO05D000020 4.0e-06 56.2 82 48.8
Gohir.A10G050900 Gossypium hirsutum HOM05D000245 ORTHO05D000020 4.0e-06 56.2 88 42.0
Gohir.D10G052600 Gossypium hirsutum HOM05D000245 ORTHO05D000020 4.0e-06 56.2 88 42.0
Gorai.011G056300 Gossypium raimondii HOM05D000245 ORTHO05D000020 4.0e-06 56.2 88 42.0
PGR083G1619 Punica granatum HOM05D000233 ORTHO05D000020 4.0e-06 56.2 84 46.4
SHI01538 Sapria himalayana HOM05D000233 ORTHO05D000020 4.0e-06 56.2 85 44.7
Sp3g13420 Schrenkiella parvula HOM05D000233 ORTHO05D000020 4.0e-06 56.2 92 42.4
SEGI_22693 Sequoiadendron giganteum HOM05D000233 ORTHO05D000020 4.0e-06 56.2 74 45.9
Actinidia07597 Actinidia chinensis HOM05D000233 ORTHO05D000020 5.3e-06 55.8 80 46.2
ATR0693G281 Amborella trichopoda HOM05D000245 ORTHO05D000020 5.3e-06 55.8 88 44.3
CANSAT64G1422 Cannabis sativa HOM05D000233 ORTHO05D000020 5.3e-06 55.8 93 44.1
Carub.0001s0292 Capsella rubella HOM05D000233 ORTHO05D000020 5.3e-06 55.8 50 58.0
CDE01G0272 Ceratophyllum demersum HOM05D000233 ORTHO05D000020 5.3e-06 55.8 65 47.7
Migut.D00917 Erythranthe guttata HOM05D000245 ORTHO05D000020 5.3e-06 55.8 89 43.8
Nitab4.5_0000584g0030 Nicotiana tabacum HOM05D007283 ORTHO05D011204 5.3e-06 55.8 58 55.2
Peaxi162Scf00071g00102 Petunia axillaris HOM05D007283 ORTHO05D011204 5.3e-06 55.8 56 57.1
Solyc01g095500.3 Solanum lycopersicum HOM05D000497 ORTHO05D000020 5.3e-06 55.8 50 62.0
Solyc05g009250.1 Solanum lycopersicum HOM05D007283 ORTHO05D022165 5.3e-06 55.8 46 65.2
Sopen05g004980 Solanum pennellii HOM05D007283 ORTHO05D022165 5.3e-06 55.8 46 65.2
PGSC0003DMG400014570 Solanum tuberosum HOM05D007283 ORTHO05D022165 5.3e-06 55.8 46 65.2
Thecc.06G128400 Theobroma cacao HOM05D000245 ORTHO05D000020 5.3e-06 55.8 88 42.0
Ah.08g213540 Amaranthus hybridus HOM05D001493 ORTHO05D000020 6.9e-06 55.5 61 50.8
Ah.15g093020 Amaranthus hybridus HOM05D000245 ORTHO05D000020 6.9e-06 55.5 80 42.5
EL10Ac3g06658 Beta vulgaris HOM05D000245 ORTHO05D000020 6.9e-06 55.5 77 46.8
CiPaw.12G120100 Carya illinoinensis HOM05D000233 ORTHO05D000020 6.9e-06 55.5 59 52.5
AUR62018057 Chenopodium quinoa HOM05D000245 ORTHO05D000020 6.9e-06 55.5 95 40.0
Cc02_g13700 Coffea canephora HOM05D000233 ORTHO05D000020 6.9e-06 55.5 103 41.7
Glyma.12G226600 Glycine max HOM05D000233 ORTHO05D000020 6.9e-06 55.5 85 44.7
Hma1.2p1_0558F.1_g178600 Hydrangea macrophylla HOM05D000233 ORTHO05D000020 6.9e-06 55.5 57 54.4
Lalb_Chr18g0059431 Lupinus albus HOM05D000233 ORTHO05D000020 6.9e-06 55.5 80 43.8
Psat4g166160 Pisum sativum HOM05D000245 ORTHO05D000020 6.9e-06 55.5 88 43.2
Sed0018570 Sechium edule HOM05D000233 ORTHO05D000020 6.9e-06 55.5 83 43.4
Hund05708 Selenicereus undatus HOM05D000245 ORTHO05D000020 6.9e-06 55.5 72 47.2
TWI38G0114 Tripterygium wilfordii HOM05D000233 ORTHO05D000020 6.9e-06 55.5 84 47.6
HPP92_014192 Vanilla planifolia HOM05D000233 ORTHO05D000020 6.9e-06 55.5 97 40.2
BcaB03g12112 Brassica carinata HOM05D000233 ORTHO05D000020 9.0e-06 55.1 65 49.2
CsaV3_4G000990 Cucumis sativus L. HOM05D000245 ORTHO05D000020 9.0e-06 55.1 118 36.4
Dinv06871 Davidia involucrata HOM05D000233 ORTHO05D000020 9.0e-06 55.1 87 44.8
Lj3g0016681 Lotus japonicus HOM05D000233 ORTHO05D000020 9.0e-06 55.1 78 46.2
Manes.04G150100 Manihot esculenta HOM05D000245 ORTHO05D000020 9.0e-06 55.1 88 40.9
Medtr2g078680 Medicago truncatula HOM05D000233 ORTHO05D000020 9.0e-06 55.1 84 46.4
Nitab4.5_0000305g0140 Nicotiana tabacum HOM05D000497 ORTHO05D000020 9.0e-06 55.1 52 57.7
PSO675G2089 Papaver somniferum HOM05D000233 ORTHO05D000020 9.0e-06 55.1 65 49.2
Rhsim12G0213000 Rhododendron simsii HOM05D000245 ORTHO05D000020 9.0e-06 55.1 103 40.8
VMungo1127G2184 Vigna mungo HOM05D000233 ORTHO05D000020 9.0e-06 55.1 86 44.2


User provided reference genes

Program Settings