Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 0.0e+00 1468.8 763 100.0
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 0.0e+00 1200.7 785 78.6
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 0.0e+00 1154.0 760 76.3
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 1.4e-278 963.0 764 67.0
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 1.5e-269 932.9 763 63.0
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 6.0e-266 921.0 765 63.4
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 4.7e-263 911.4 763 62.3
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 1.1e-259 900.2 762 61.7
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 1.6e-258 896.3 766 61.6
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 1.0e-257 893.6 762 61.8
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 6.6e-257 891.0 766 60.1
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 4.3e-256 888.3 770 60.9
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 1.4e-254 883.2 806 58.6
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 3.4e-253 878.6 767 60.1
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 6.4e-252 874.4 761 60.6
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 1.1e-251 873.6 764 59.6
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.4e-251 873.2 761 59.4
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 2.7e-250 869.0 758 59.6
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 4.6e-250 868.2 762 59.7
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 7.8e-250 867.5 762 58.7
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 7.8e-250 867.5 763 59.1
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 1.7e-249 866.3 764 58.2
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 1.5e-248 863.2 738 61.4
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.5e-248 863.2 775 58.3
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 9.6e-248 860.5 764 58.9
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 1.3e-247 860.1 779 58.3
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 6.2e-247 857.8 763 58.1
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 1.2e-245 853.6 761 58.9
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 1.5e-245 853.2 759 58.8
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 3.4e-245 852.0 761 58.2
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 7.6e-245 850.9 766 58.0
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 9.9e-245 850.5 764 58.4
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 1.7e-244 849.7 763 58.3
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 2.9e-244 849.0 763 57.5
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 1.1e-243 847.0 766 57.6
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 1.1e-243 847.0 759 58.1
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 4.2e-243 845.1 773 57.3
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 7.8e-242 840.9 745 59.5
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 5.1e-241 838.2 765 57.1
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 2.1e-239 832.8 763 58.8
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 4.0e-238 828.6 764 57.5
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 5.3e-238 828.2 763 57.0
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 1.3e-236 823.5 766 57.0
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 8.4e-236 820.8 770 55.3
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 3.5e-234 815.5 734 59.1
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 3.9e-233 812.0 777 55.2
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 3.9e-233 812.0 766 56.0
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 1.5e-232 810.1 769 56.7
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 9.6e-232 807.4 763 57.5
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 6.2e-231 804.7 764 55.9
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 6.2e-231 804.7 764 55.9
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 1.8e-230 803.1 765 55.2
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 1.2e-229 800.4 764 55.5
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 4.5e-229 798.5 714 57.8
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 3.8e-228 795.4 763 54.5
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 6.5e-228 794.7 762 57.6
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 8.4e-228 794.3 764 55.5
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 1.9e-227 793.1 763 54.3
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 3.2e-227 792.3 787 55.4
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 7.1e-227 791.2 773 54.6
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 2.1e-226 789.6 764 54.5
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 2.7e-226 789.3 767 54.8
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 1.0e-225 787.3 761 54.4
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 3.0e-225 785.8 787 53.7
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 3.9e-225 785.4 787 53.6
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 1.1e-224 783.9 766 53.9
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 1.9e-224 783.1 761 54.8
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 5.8e-221 771.5 770 53.6
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 5.8e-221 771.5 733 56.8
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 7.6e-221 771.2 761 53.9
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 1.0e-220 770.8 779 53.3
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 2.9e-220 769.2 779 53.4
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 3.8e-220 768.8 738 55.3
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 5.5e-219 765.0 766 52.3
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 4.2e-211 738.8 762 52.9
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 7.2e-211 738.0 720 54.6
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 9.7e-208 727.6 573 65.1
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 1.7e-207 726.9 805 50.4
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 8.2e-207 724.5 738 56.2
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 3.1e-206 722.6 756 55.2
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 2.9e-204 716.1 732 53.0
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 5.0e-204 715.3 732 52.9
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 1.4e-203 713.8 766 51.0
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 2.7e-202 709.5 575 62.1
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 8.8e-201 704.5 765 49.8
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 2.2e-199 699.9 763 50.3
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 4.1e-198 695.7 574 61.5
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 7.0e-198 694.9 567 63.0
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 6.1e-194 681.8 763 50.7
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 1.7e-191 673.7 764 49.2
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 4.8e-191 672.2 771 48.9
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 1.4e-190 670.6 566 62.0
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 3.5e-189 666.0 569 61.5
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 5.9e-189 665.2 566 62.0
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 1.1e-187 661.0 639 54.6
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 9.4e-187 657.9 741 49.3
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 1.2e-186 657.5 658 51.1
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 4.7e-186 655.6 529 64.3
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 1.8e-185 653.7 516 64.7
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 5.2e-185 652.1 569 59.8
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 6.8e-177 625.2 529 63.9
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 1.2e-176 624.4 732 48.5
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 3.4e-176 622.9 459 70.4
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 2.2e-175 620.2 763 48.1
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 4.7e-170 602.4 584 54.1
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 1.4e-153 547.7 765 43.0
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 6.4e-143 512.3 508 51.6
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 1.1e-142 511.5 774 38.2
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.4e-142 511.1 535 51.2
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 4.3e-139 499.6 617 46.0
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 2.0e-128 464.2 385 65.5
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 5.5e-118 429.5 431 52.2
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 7.9e-117 425.6 333 65.5
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 1.7e-111 407.9 288 72.9
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 1.1e-107 395.2 477 47.8
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 2.5e-107 394.0 344 57.8
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 2.8e-106 390.6 326 63.2
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 3.1e-105 387.1 486 45.9
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 2.7e-101 374.0 814 31.7
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 1.3e-100 371.7 564 40.8
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 3.1e-97 360.5 284 65.1
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 1.0e-84 318.9 287 59.6
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 1.8e-84 318.2 738 29.9
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 5.3e-81 306.6 286 60.1
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 7.7e-80 302.8 230 68.3
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 8.5e-79 299.3 781 27.8
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 1.7e-63 248.4 177 68.9
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 4.9e-58 230.3 218 51.8
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 1.0e-55 222.6 227 51.5
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 4.6e-48 197.2 639 26.0
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.7e-42 178.7 421 33.5
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 6.4e-42 176.8 421 33.3
Atru.chr12.2374 Acer truncatum HOM05D004734 ORTHO05D006019 2.4e-41 174.9 202 47.0
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 1.7e-39 168.7 248 41.1
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 6.2e-37 160.2 138 63.0
SHI10095 Sapria himalayana HOM05D004734 ORTHO05D006019 6.4e-34 150.2 256 37.5
Medtr5g084823 Medicago truncatula HOM05D004734 ORTHO05D006019 8.9e-28 129.8 189 39.7
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 4.6e-24 117.5 110 58.2
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 1.0e-23 116.3 120 53.3
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 1.5e-22 112.5 95 61.1
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 3.6e-21 107.8 80 67.5
SMO278G0012 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 6.9e-20 103.6 148 41.2
HPP92_000155 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.6e-19 101.7 243 33.7
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.6e-16 92.4 76 61.8
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.6e-13 82.4 68 61.8
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 2.1e-13 82.0 120 42.5
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 6.4e-10 70.5 87 35.6
Nitab4.5_0001356g0190 Nicotiana tabacum HOM05D000224 ORTHO05D001489 1.3e-07 62.8 124 32.3
FvH4_3g20454 Fragaria vesca HOM05D004734 ORTHO05D196162 2.5e-06 58.5 82 45.1


User provided reference genes

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