Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.A01112 Erythranthe guttata HOM05D004923 ORTHO05D005940 4.3e-217 758.4 638 100.0
MSTRG.12109 Avicennia marina HOM05D004923 ORTHO05D005940 8.3e-112 408.7 638 44.7
SGA_v2.0_scaffold104G30165 Striga asiatica HOM05D004923 ORTHO05D005940 6.9e-90 335.9 638 37.6
SalBow6G2889 Salvia bowleyana HOM05D004923 ORTHO05D005940 2.7e-86 323.9 640 45.9
Oeu020434.1 Olea europaea HOM05D004923 ORTHO05D005940 3.2e-71 273.9 640 38.4
Sopen01g053000 Solanum pennellii HOM05D004923 ORTHO05D005940 8.4e-64 249.2 663 35.0
Hma1.2p1_0702F.1_g206060 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 1.1e-60 238.8 617 33.9
Hma1.2p1_2453F.1_g322410 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 4.3e-60 236.9 617 33.9
PGSC0003DMG400001646 Solanum tuberosum HOM05D004923 ORTHO05D005940 9.7e-60 235.7 663 43.0
Solyc01g110960.4 Solanum lycopersicum HOM05D004923 ORTHO05D005940 3.6e-54 217.2 603 33.2
Cc02_g32730 Coffea canephora HOM05D004923 ORTHO05D005940 3.3e-52 210.7 651 33.2
CSS0000935 Camellia sinensis var. sinensis HOM05D004923 ORTHO05D005940 3.7e-51 207.2 622 31.4
Actinidia19810 Actinidia chinensis HOM05D004923 ORTHO05D005940 5.5e-47 193.4 644 32.8
Rhsim05G0146200 Rhododendron simsii HOM05D004923 ORTHO05D005940 3.3e-44 184.1 631 35.0
HanXRQChr05g0158391 Helianthus annuus HOM05D004923 ORTHO05D005940 4.5e-41 173.7 654 38.1
Dinv40234 Davidia involucrata HOM05D004923 ORTHO05D005940 5.0e-40 170.2 593 29.0
Haze_04263 Corylus avellana HOM05D004923 ORTHO05D005940 8.5e-40 169.5 603 32.0
Cfa006523 Carpinus fangiana HOM05D004923 ORTHO05D005940 5.5e-39 166.8 642 31.2
GSVIVG01022015001 Vitis vinifera HOM05D004923 ORTHO05D005940 1.0e-37 162.5 644 39.6
CiPaw.07G012700 Carya illinoinensis HOM05D004923 ORTHO05D005940 9.7e-36 156.0 642 29.9
QL03p003582 Quercus lobata HOM05D004923 ORTHO05D005940 3.8e-32 144.1 640 34.5
CAN.G1329.24 Capsicum annuum HOM05D004923 ORTHO05D005940 5.0e-32 143.7 663 45.7
QL03p002854 Quercus lobata HOM05D004923 ORTHO05D005940 5.0e-32 143.7 640 34.5
Nitab4.5_0000003g0420 Nicotiana tabacum HOM05D004923 ORTHO05D005940 8.5e-32 142.9 664 48.3
unitig_8.g3020 Utricularia gibba HOM05D004923 ORTHO05D005940 1.5e-31 142.1 639 25.2
Peaxi162Scf00016g10236 Petunia axillaris HOM05D004923 ORTHO05D005940 3.0e-29 134.4 622 48.4
Oeu019603.1 Olea europaea HOM05D004923 ORTHO05D005940 5.2e-29 133.7 116 66.4
PGR083G0910 Punica granatum HOM05D004923 ORTHO05D005940 6.3e-27 126.7 602 38.0
MD12G1227100 Malus domestica HOM05D004923 ORTHO05D005940 5.3e-26 123.6 257 35.8
Sp3g03950 Schrenkiella parvula HOM05D004923 ORTHO05D005940 3.8e-24 117.5 647 31.5
TAR362G1085 Trochodendron aralioides HOM05D004923 ORTHO05D005940 3.8e-24 117.5 760 24.9
AT5G27330 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 5.0e-24 117.1 650 33.8
Gohir.D08G229800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 6.5e-24 116.7 672 30.1
Gorai.004G244000 Gossypium raimondii HOM05D004923 ORTHO05D005940 8.5e-24 116.3 672 30.1
Nitab4.5_0008768g0010 Nicotiana tabacum HOM05D004923 ORTHO05D005940 2.5e-23 114.8 663 46.2
Gohir.A08G212800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 4.2e-23 114.0 675 23.9
CARHR185930 Cardamine hirsuta HOM05D004923 ORTHO05D005940 5.5e-23 113.6 641 27.3
Prupe.6G332700 Prunus persica HOM05D004923 ORTHO05D005940 9.4e-23 112.8 658 33.0
Sabra05G0039600 Salix brachista HOM05D004923 ORTHO05D005940 1.6e-22 112.1 603 27.7
TWI56G0946 Tripterygium wilfordii HOM05D004923 ORTHO05D005940 2.1e-22 111.7 643 28.9
CANSAT54G1324 Cannabis sativa HOM05D004923 ORTHO05D005940 3.6e-22 110.9 272 37.1
FAN02G0211 Fragaria x ananassa HOM05D004923 ORTHO05D005940 6.1e-22 110.2 274 34.7
ClCG02G016160 Citrullus lanatus HOM05D004923 ORTHO05D005940 2.3e-21 108.2 651 24.4
RcHm_v2.0_Chr3g0453461 Rosa chinensis HOM05D004923 ORTHO05D005940 4.0e-21 107.5 278 32.4
MD04G1212300 Malus domestica HOM05D004923 ORTHO05D005940 5.2e-21 107.1 256 35.5
FAN09G1938 Fragaria x ananassa HOM05D004923 ORTHO05D005940 6.8e-21 106.7 258 36.4
Ciclev10000602m.g Citrus clementina HOM05D004923 ORTHO05D005940 8.8e-21 106.3 646 26.3
MELO3C004316.2 Cucumis melo HOM05D004923 ORTHO05D005940 1.2e-20 105.9 650 23.8
HanXRQChr15g0493471 Helianthus annuus HOM05D004923 ORTHO05D005940 1.2e-20 105.9 626 31.5
BcaNung02477 Brassica carinata HOM05D004923 ORTHO05D005940 2.6e-20 104.8 654 35.6
CiPaw.08G168100 Carya illinoinensis HOM05D004923 ORTHO05D005940 3.4e-20 104.4 115 53.9
CsaV3_2G004820 Cucumis sativus L. HOM05D004923 ORTHO05D005940 4.4e-20 104.0 272 33.1
Cpa.g.sc84.119 Carica papaya HOM05D004923 ORTHO05D005940 5.7e-20 103.6 115 54.8
Sc06g0003440 Simmondsia chinensis HOM05D004923 ORTHO05D005940 5.7e-20 103.6 668 23.5
Lsat_1_v5_gn_5_38100 Lactuca sativa HOM05D004923 ORTHO05D005940 9.8e-20 102.8 649 31.0
Lj9P678T27 Lonicera japonica HOM05D004923 ORTHO05D005940 2.2e-19 101.7 439 32.8
DCAR_029454 Daucus carota HOM05D004923 ORTHO05D005940 6.3e-19 100.1 280 34.6
Manes.09G161700 Manihot esculenta HOM05D004923 ORTHO05D005940 8.3e-19 99.8 636 27.0
Carub.0006s2521 Capsella rubella HOM05D004923 ORTHO05D005940 1.1e-18 99.4 312 31.4
C07p40590 Brassica napus HOM05D004923 ORTHO05D005940 1.4e-18 99.0 654 31.3
FAN05G2617 Fragaria x ananassa HOM05D004923 ORTHO05D005940 1.4e-18 99.0 230 33.9
FAN05G5260 Fragaria x ananassa HOM05D004923 ORTHO05D005940 1.4e-18 99.0 230 33.9
Eucgr.B02029 Eucalyptus grandis HOM05D004923 ORTHO05D005940 1.8e-18 98.6 651 26.6
Peaxi162Scf00351g00530 Petunia axillaris HOM05D004923 ORTHO05D005940 1.8e-18 98.6 130 40.8
AL3G15510 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 3.1e-18 97.8 653 28.5
Gohir.A11G260600 Gossypium hirsutum HOM05D004923 ORTHO05D005940 3.1e-18 97.8 652 31.3
Gorai.007G291400 Gossypium raimondii HOM05D004923 ORTHO05D005940 5.4e-18 97.1 255 33.3
FvH4_6g04961 Fragaria vesca HOM05D004923 ORTHO05D005940 9.1e-18 96.3 274 33.2
Gohir.D11G270900 Gossypium hirsutum HOM05D004923 ORTHO05D005940 9.1e-18 96.3 255 33.3
Carub.0003s0437 Capsella rubella HOM05D004923 ORTHO05D005940 1.6e-17 95.5 649 32.4
Sed0008414 Sechium edule HOM05D004923 ORTHO05D005940 2.7e-17 94.7 637 23.1
BcaNung04359 Brassica carinata HOM05D004923 ORTHO05D005940 5.9e-17 93.6 653 26.3
Thecc.05G297900 Theobroma cacao HOM05D004923 ORTHO05D005940 7.7e-17 93.2 680 30.0
Thhalv10003823m.g Eutrema salsugineum HOM05D004923 ORTHO05D005940 1.0e-16 92.8 270 32.2
Lj8C55T15 Lonicera japonica HOM05D004923 ORTHO05D005940 1.0e-16 92.8 260 31.9
Manes.08G124600 Manihot esculenta HOM05D004923 ORTHO05D005940 2.9e-16 91.3 276 31.9
Duzib177G0588 Durio zibethinus HOM05D004923 ORTHO05D005940 8.6e-16 89.7 692 30.9
Atru.chr2.532 Acer truncatum HOM05D004923 ORTHO05D005940 1.9e-15 88.6 112 47.3
Ah.04g159880 Amaranthus hybridus HOM05D004923 ORTHO05D005940 1.9e-15 88.6 631 26.3
FAN14G0846 Fragaria x ananassa HOM05D004923 ORTHO05D005940 2.5e-15 88.2 306 31.4
Sabra13G0028900 Salix brachista HOM05D004923 ORTHO05D005940 7.2e-15 86.7 638 30.1
THA.LOC104821702 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 1.2e-14 85.9 212 35.8
Nn4g26098 Nelumbo nucifera HOM05D004923 ORTHO05D005940 1.4e-13 82.4 760 33.6
C05p62100 Brassica napus HOM05D004923 ORTHO05D005940 1.8e-13 82.0 648 27.6
BolC5t34868H Brassica oleracea HOM05D004923 ORTHO05D005940 1.8e-13 82.0 648 27.6
Lalb_Chr02g0148481 Lupinus albus HOM05D004923 ORTHO05D005940 1.8e-13 82.0 602 23.3
Sp2g20550 Schrenkiella parvula HOM05D004923 ORTHO05D005940 6.8e-13 80.1 653 26.2
BolC7t44596H Brassica oleracea HOM05D004923 ORTHO05D005940 8.9e-13 79.7 654 41.3
AT3G05130 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 1.5e-12 79.0 653 29.9
ECA246G1289 Erigeron canadensis HOM05D004923 ORTHO05D005940 1.5e-12 79.0 112 43.8
TPR.G2744 Trifolium pratense HOM05D004923 ORTHO05D005940 3.4e-12 77.8 114 43.9
Potri.005G040500 Populus trichocarpa HOM05D004923 ORTHO05D005940 4.4e-12 77.4 112 46.4
Ca_10079_v3 Cicer arietinum L. HOM05D004923 ORTHO05D005940 5.7e-12 77.0 114 43.0
THA.LOC104818671 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 7.5e-12 76.6 657 28.0
Atru.chr5.1952 Acer truncatum HOM05D000107 ORTHO05D000062 9.8e-12 76.3 170 30.6
BraA05t23008Z Brassica rapa HOM05D004923 ORTHO05D005940 9.8e-12 76.3 109 41.3
CARHR079450 Cardamine hirsuta HOM05D004923 ORTHO05D005940 1.7e-11 75.5 106 41.5
A05p42440 Brassica napus HOM05D004923 ORTHO05D005940 2.2e-11 75.1 109 41.3
Medtr1g082215 Medicago truncatula HOM05D004923 ORTHO05D005940 3.7e-11 74.3 114 43.9
Glyma.20G230700 Glycine max HOM05D004923 ORTHO05D005940 6.3e-11 73.6 116 43.1
COL.COLO4_13559 Corchorus olitorius HOM05D004923 ORTHO05D005940 1.4e-10 72.4 117 39.3
Potri.013G028600 Populus trichocarpa HOM05D004923 ORTHO05D005940 1.8e-10 72.0 637 28.4
AUR62000899 Chenopodium quinoa HOM05D004923 ORTHO05D005940 9.2e-10 69.7 622 23.6
arahy.Tifrunner.gnm1.ann1.VPW6I2 Arachis hypogaea HOM05D004923 ORTHO05D005940 1.2e-09 69.3 639 26.0
VMungo0720G2495 Vigna mungo HOM05D004923 ORTHO05D005940 1.2e-09 69.3 108 43.5
arahy.Tifrunner.gnm1.ann1.96LETV Arachis hypogaea HOM05D004923 ORTHO05D005940 2.7e-09 68.2 638 26.0
Glyma.10G157900 Glycine max HOM05D004923 ORTHO05D005940 3.5e-09 67.8 645 24.2
Nn4g26097 Nelumbo nucifera HOM05D004923 ORTHO05D005940 4.5e-09 67.4 778 21.6
Ah.04g159900 Amaranthus hybridus HOM05D004923 ORTHO05D005940 5.9e-09 67.0 209 32.1
AL6G39740 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 5.9e-09 67.0 657 31.8
AUR62005075 Chenopodium quinoa HOM05D004923 ORTHO05D005940 5.9e-09 67.0 643 23.0
Lsat_1_v5_gn_4_137721 Lactuca sativa HOM05D004923 ORTHO05D005940 1.0e-08 66.2 115 38.3
PSO151G0007 Papaver somniferum HOM05D004923 ORTHO05D005940 1.0e-08 66.2 116 39.7
PSO151G0141 Papaver somniferum HOM05D004923 ORTHO05D005940 1.0e-08 66.2 116 39.7
PSO302G0039 Papaver somniferum HOM05D004923 ORTHO05D005940 2.3e-08 65.1 114 40.4
A06p37630 Brassica napus HOM05D004923 ORTHO05D005940 2.9e-08 64.7 159 34.6
ECA233G0604 Erigeron canadensis HOM05D004923 ORTHO05D005940 2.9e-08 64.7 603 22.2
Actinidia00480 Actinidia chinensis HOM05D001349 ORTHO05D005940 3.9e-08 64.3 71 57.7
Ah.04g159890 Amaranthus hybridus HOM05D004923 ORTHO05D005940 5.0e-08 63.9 98 40.8
BraA06t26683Z Brassica rapa HOM05D004923 ORTHO05D005940 5.0e-08 63.9 159 34.6
Psat6g148400 Pisum sativum HOM05D004923 ORTHO05D005940 8.6e-08 63.2 115 40.0
Actinidia08545 Actinidia chinensis HOM05D004923 ORTHO05D005940 1.1e-07 62.8 71 54.9
Phvul.007G183300 Phaseolus vulgaris HOM05D004923 ORTHO05D005940 1.1e-07 62.8 108 40.7
SHI18226 Sapria himalayana HOM05D004923 ORTHO05D005940 1.1e-07 62.8 63 52.4
CDE09G0746 Ceratophyllum demersum HOM05D056443 ORTHO05D005940 3.3e-07 61.2 282 25.2
Aa31LG11G9060 Aethionema arabicum HOM05D004923 ORTHO05D005940 1.6e-06 58.9 214 29.0
arahy.Tifrunner.gnm1.ann1.S9CKM7 Arachis hypogaea HOM05D004923 ORTHO05D005940 2.8e-06 58.2 602 29.9
PSO170G6876 Papaver somniferum HOM05D004923 ORTHO05D005940 4.7e-06 57.4 116 37.1


User provided reference genes

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