Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 3.5e-47 191.4 107 100.0
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 3.5e-31 138.3 108 76.9
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 3.0e-30 135.2 108 75.9
MSTRG.12104 Avicennia marina HOM05D006762 ORTHO05D003505 1.3e-25 119.8 100 76.0
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 1.2e-23 113.2 107 64.5
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 6.0e-23 110.9 107 63.6
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 6.0e-23 110.9 107 61.7
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 1.0e-22 110.2 107 61.7
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 2.3e-22 109.0 109 60.6
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 6.7e-22 107.5 111 60.4
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 8.7e-22 107.1 107 63.6
unitig_21.g20319 Utricularia gibba HOM05D006762 ORTHO05D003505 1.5e-21 106.3 108 62.0
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 2.5e-21 105.5 110 66.4
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 7.4e-21 104.0 113 61.1
Solyc08g078560.3 Solanum lycopersicum HOM05D006762 ORTHO05D003505 7.4e-21 104.0 107 57.9
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 9.6e-21 103.6 106 59.4
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 1.3e-20 103.2 112 59.8
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 1.6e-20 102.8 112 58.0
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 2.1e-20 102.4 113 60.2
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 2.1e-20 102.4 113 60.2
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 2.8e-20 102.1 113 60.2
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 3.7e-20 101.7 111 58.6
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 3.7e-20 101.7 109 58.7
SalBow4G0096 Salvia bowleyana HOM05D006762 ORTHO05D003505 6.2e-20 100.9 89 71.9
SalBow4G2872 Salvia bowleyana HOM05D006762 ORTHO05D003505 6.2e-20 100.9 89 71.9
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 1.1e-19 100.1 107 58.9
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 1.1e-19 100.1 107 58.9
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 2.4e-19 99.0 109 57.8
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 3.1e-19 98.6 112 59.8
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 3.1e-19 98.6 109 56.9
Actinidia27471 Actinidia chinensis HOM05D006762 ORTHO05D003505 4.0e-19 98.2 111 56.8
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 9.0e-19 97.1 107 55.1
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 2.0e-18 95.9 109 63.3
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 2.0e-18 95.9 109 63.3
Lsat_1_v5_gn_6_90840 Lactuca sativa HOM05D006762 ORTHO05D003505 2.0e-18 95.9 96 59.4
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 2.6e-18 95.5 109 57.8
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 2.6e-18 95.5 109 57.8
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 2.6e-18 95.5 107 56.1
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 4.5e-18 94.7 107 55.1
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 1.7e-17 92.8 109 62.4
Hund14549 Selenicereus undatus HOM05D006762 ORTHO05D003505 1.7e-17 92.8 96 57.3
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 1.4e-16 89.7 102 58.8
Sopen08g027040 Solanum pennellii HOM05D006762 ORTHO05D003505 1.4e-16 89.7 96 57.3
Lj8A263T41 Lonicera japonica HOM05D006762 ORTHO05D003505 1.9e-16 89.4 104 57.7
Psat4g072480 Pisum sativum HOM05D006762 ORTHO05D003505 2.4e-16 89.0 107 56.1
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 4.2e-16 88.2 115 52.2
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 5.5e-16 87.8 108 53.7
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 9.3e-16 87.0 107 55.1
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 1.2e-15 86.7 102 56.9
Duzib084G1100 Durio zibethinus HOM05D006762 ORTHO05D003505 1.6e-15 86.3 100 61.0
AL8G10530 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 2.1e-15 85.9 98 58.2
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 2.1e-15 85.9 97 56.7
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 2.7e-15 85.5 111 50.5
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 2.7e-15 85.5 113 54.9
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 3.5e-15 85.1 106 53.8
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 6.0e-15 84.3 104 56.7
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 7.9e-15 84.0 97 58.8
CiPaw.12G051800 Carya illinoinensis HOM05D006762 ORTHO05D003505 7.9e-15 84.0 98 55.1
Cc08_g12340 Coffea canephora HOM05D006762 ORTHO05D003505 7.9e-15 84.0 100 58.0
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 1.0e-14 83.6 107 51.4
Potri.001G333800 Populus trichocarpa HOM05D006762 ORTHO05D003505 1.3e-14 83.2 102 53.9
TWI81G0572 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 2.3e-14 82.4 104 54.8
Duzib205G1027 Durio zibethinus HOM05D006762 ORTHO05D003505 3.0e-14 82.0 101 58.4
MD04G1063100 Malus domestica HOM05D006762 ORTHO05D003505 3.0e-14 82.0 100 55.0
Thecc.03G250100 Theobroma cacao HOM05D006762 ORTHO05D003505 3.0e-14 82.0 99 59.6
CsaV3_3G002630 Cucumis sativus L. HOM05D006762 ORTHO05D003505 3.9e-14 81.6 98 53.1
Rhsim07G0109700 Rhododendron simsii HOM05D006762 ORTHO05D003505 3.9e-14 81.6 97 55.7
ECA240G1429 Erigeron canadensis HOM05D006762 ORTHO05D003505 8.7e-14 80.5 96 53.1
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 1.5e-13 79.7 107 49.5
AT5G47455 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 2.5e-13 79.0 96 55.2
Dinv39153 Davidia involucrata HOM05D000502 ORTHO05D000356 3.3e-13 78.6 87 58.6
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 3.3e-13 78.6 107 48.6
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 4.3e-13 78.2 107 48.6
BraA06t27376Z Brassica rapa HOM05D006762 ORTHO05D003505 1.6e-12 76.3 102 52.9
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 2.1e-12 75.9 99 48.5
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 2.1e-12 75.9 111 52.3
Lalb_Chr16g0386731 Lupinus albus HOM05D006762 ORTHO05D003505 2.1e-12 75.9 98 55.1
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 2.8e-12 75.5 110 53.6
Nn6g33933 Nelumbo nucifera HOM05D006762 ORTHO05D003505 3.7e-12 75.1 102 52.9
Carub.0007s2409 Capsella rubella HOM05D006762 ORTHO05D003505 4.8e-12 74.7 96 54.2
BolC7t43652H Brassica oleracea HOM05D006762 ORTHO05D003505 1.4e-11 73.2 98 53.1
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 1.4e-11 73.2 98 50.0
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 2.4e-11 72.4 108 50.9
Glyma.05G060100 Glycine max HOM05D006762 ORTHO05D003505 2.4e-11 72.4 96 54.2
TWI60G1284 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 3.1e-11 72.0 104 53.8
Prupe.5G068300 Prunus persica HOM05D006762 ORTHO05D003505 5.3e-11 71.2 96 51.0
TPR.G37627 Trifolium pratense HOM05D006762 ORTHO05D003505 5.3e-11 71.2 98 52.0
PGR031G2035 Punica granatum HOM05D006762 ORTHO05D003505 1.2e-10 70.1 98 56.1
AT4G17310 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 1.5e-10 69.7 96 49.0
SEGI_29263 Sequoiadendron giganteum HOM05D006762 ORTHO05D003505 1.5e-10 69.7 111 46.8
QL04p035820 Quercus lobata HOM05D006762 ORTHO05D003505 3.4e-10 68.6 107 47.7
Manes.02G040300 Manihot esculenta HOM05D006762 ORTHO05D003505 4.5e-10 68.2 98 49.0
THA.LOC104812806 Tarenaya hassleriana HOM05D006762 ORTHO05D003505 4.5e-10 68.2 96 50.0
ATR0317G117 Amborella trichopoda HOM05D006762 ORTHO05D003505 5.8e-10 67.8 98 50.0
AUR62019952 Chenopodium quinoa HOM05D006762 ORTHO05D003505 1.0e-09 67.0 107 45.8
FvH4_5g19060 Fragaria vesca HOM05D006762 ORTHO05D003505 1.7e-09 66.2 96 46.9
Ca_21971_v3 Cicer arietinum L. HOM05D006762 ORTHO05D003505 2.2e-09 65.9 99 54.5
Glyma.17G142500 Glycine max HOM05D006762 ORTHO05D003505 3.8e-09 65.1 96 50.0
AUR62007089 Chenopodium quinoa HOM05D006762 ORTHO05D003505 4.9e-09 64.7 107 44.9
Phvul.003G221200 Phaseolus vulgaris HOM05D006762 ORTHO05D003505 4.9e-09 64.7 98 52.0
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 6.5e-09 64.3 94 50.0
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 1.1e-08 63.5 107 42.1
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 1.4e-08 63.2 107 44.9
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 1.9e-08 62.8 99 45.5
Sc09g0009340 Simmondsia chinensis HOM05D007429 ORTHO05D003505 1.9e-08 62.8 107 43.0
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 2.5e-08 62.4 107 43.0
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 2.5e-08 62.4 107 43.0
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 3.2e-08 62.0 107 43.9
arahy.Tifrunner.gnm1.ann1.A5XQNM Arachis hypogaea HOM05D006762 ORTHO05D003505 4.2e-08 61.6 99 49.5
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 4.2e-08 61.6 107 43.0
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 4.2e-08 61.6 107 43.0
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 4.2e-08 61.6 107 43.0
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 4.2e-08 61.6 110 42.7
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 5.5e-08 61.2 91 46.2
Aa31LG3G15560 Aethionema arabicum HOM05D007429 ORTHO05D003505 9.3e-08 60.5 107 41.1
Prupe.1G447500 Prunus persica HOM05D007429 ORTHO05D003505 9.3e-08 60.5 96 44.8
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 9.3e-08 60.5 104 43.3
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 1.2e-07 60.1 107 42.1
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 1.6e-07 59.7 91 45.1
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 2.1e-07 59.3 101 42.6
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 2.1e-07 59.3 100 46.0
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 2.1e-07 59.3 107 43.0
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 2.1e-07 59.3 112 43.8
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 2.1e-07 59.3 107 42.1
arahy.Tifrunner.gnm1.ann1.QP3VPD Arachis hypogaea HOM05D006762 ORTHO05D003505 2.7e-07 58.9 99 50.5
CSS0021998 Camellia sinensis var. sinensis HOM05D006762 ORTHO05D003505 2.7e-07 58.9 96 47.9
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 2.7e-07 58.9 101 47.5
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 3.5e-07 58.5 107 43.9
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 3.5e-07 58.5 107 43.0
Glyma.18G109000 Glycine max HOM05D006762 ORTHO05D003505 4.6e-07 58.2 95 52.6
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 6.0e-07 57.8 107 42.1
Thhalv10005203m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 6.0e-07 57.8 99 43.4
Glyma.03G118000 Glycine max HOM05D006762 ORTHO05D022366 7.9e-07 57.4 102 47.1
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 1.0e-06 57.0 99 42.4
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 1.0e-06 57.0 108 44.4
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 1.3e-06 56.6 107 40.2
BcaC03g13383 Brassica carinata HOM05D007429 ORTHO05D003505 1.3e-06 56.6 107 41.1
C02p05300 Brassica napus HOM05D007429 ORTHO05D003505 1.3e-06 56.6 107 41.1
BolC2t06478H Brassica oleracea HOM05D007429 ORTHO05D003505 1.3e-06 56.6 107 41.1
TWI31G0442 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 1.3e-06 56.6 98 44.9
A02p01120 Brassica napus HOM05D007429 ORTHO05D003505 1.8e-06 56.2 107 41.1
BraA02t05091Z Brassica rapa HOM05D007429 ORTHO05D003505 1.8e-06 56.2 107 41.1
CDE12G0636 Ceratophyllum demersum HOM05D006762 ORTHO05D003505 2.3e-06 55.8 108 42.6
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 2.3e-06 55.8 107 41.1
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 2.3e-06 55.8 109 44.0
CSS0037511 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 3.9e-06 55.1 107 40.2
Carub.0006s1011 Capsella rubella HOM05D007429 ORTHO05D003505 3.9e-06 55.1 107 40.2
Lalb_Chr08g0243031 Lupinus albus HOM05D007429 ORTHO05D003505 3.9e-06 55.1 51 54.9
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 3.9e-06 55.1 96 42.7
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 5.1e-06 54.7 109 43.1
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 5.1e-06 54.7 107 40.2
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 5.1e-06 54.7 107 42.1
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 5.1e-06 54.7 88 40.9
Dinv27908 Davidia involucrata HOM05D007429 ORTHO05D003505 5.1e-06 54.7 107 37.4
Dinv44108 Davidia involucrata HOM05D006762 ORTHO05D003505 5.1e-06 54.7 65 53.8
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 5.1e-06 54.7 96 44.8
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 5.1e-06 54.7 78 46.2
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 6.7e-06 54.3 90 44.4
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 6.7e-06 54.3 45 60.0
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 6.7e-06 54.3 45 60.0
Glyma.17G210100 Glycine max HOM05D006762 ORTHO05D003505 6.7e-06 54.3 95 50.5
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 8.7e-06 53.9 96 43.8


User provided reference genes

Program Settings