Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.A01096 Erythranthe guttata HOM05D006904 ORTHO05D008439 9.9e-159 563.5 313 100.0
MSTRG.24864 Avicennia marina HOM05D006904 ORTHO05D008439 4.2e-93 345.5 311 66.9
Nitab4.5_0004251g0070 Nicotiana tabacum HOM05D006904 ORTHO05D008439 4.5e-87 325.5 324 59.3
HanXRQChr07g0192161 Helianthus annuus HOM05D006904 ORTHO05D008439 1.7e-81 307.0 327 56.3
CAN.G567.78 Capsicum annuum HOM05D006904 ORTHO05D008439 1.4e-80 303.9 258 65.9
Solyc08g083010.3 Solanum lycopersicum HOM05D006904 ORTHO05D008439 3.2e-80 302.8 308 58.8
Sopen08g031220 Solanum pennellii HOM05D006904 ORTHO05D008439 4.1e-80 302.4 319 57.7
SGA_v2.0_scaffold104G30265 Striga asiatica HOM05D006904 ORTHO05D008439 9.2e-80 301.2 324 60.8
PGSC0003DMG400012243 Solanum tuberosum HOM05D006904 ORTHO05D008439 2.7e-79 299.7 259 64.9
Potri.001G084500 Populus trichocarpa HOM05D006904 ORTHO05D008439 3.5e-79 299.3 300 59.0
Aqoxy5G04256 Aquilegia oxysepala HOM05D006904 ORTHO05D008439 1.1e-77 294.3 269 62.5
Oeu010740.1 Olea europaea HOM05D006904 ORTHO05D008439 4.3e-77 292.4 242 69.8
Nitab4.5_0007063g0060 Nicotiana tabacum HOM05D006904 ORTHO05D008439 6.2e-76 288.5 327 54.1
ECA233G3570 Erigeron canadensis HOM05D006904 ORTHO05D008439 4.0e-75 285.8 253 62.8
Cfa011933 Carpinus fangiana HOM05D006904 ORTHO05D008439 2.6e-74 283.1 313 54.3
COL.COLO4_10787 Corchorus olitorius HOM05D006904 ORTHO05D008439 7.5e-74 281.6 304 55.9
Haze_09157 Corylus avellana HOM05D006904 ORTHO05D008439 7.5e-74 281.6 321 52.0
Thecc.03G222200 Theobroma cacao HOM05D006904 ORTHO05D008439 7.5e-74 281.6 293 56.7
Gohir.D12G240700 Gossypium hirsutum HOM05D006904 ORTHO05D008439 9.8e-74 281.2 278 57.9
Gorai.008G257800 Gossypium raimondii HOM05D006904 ORTHO05D008439 9.8e-74 281.2 278 57.9
Rhsim02G0251400 Rhododendron simsii HOM05D006904 ORTHO05D008439 6.4e-73 278.5 330 53.3
TWI81G0826 Tripterygium wilfordii HOM05D006904 ORTHO05D008439 6.4e-73 278.5 273 57.9
Haze_09163 Corylus avellana HOM05D006904 ORTHO05D008439 8.3e-73 278.1 323 51.7
Gohir.A12G239500 Gossypium hirsutum HOM05D006904 ORTHO05D008439 8.3e-73 278.1 307 54.7
CSS0028351 Camellia sinensis var. sinensis HOM05D006904 ORTHO05D008439 1.9e-72 276.9 299 54.8
MD06G1117600 Malus domestica HOM05D006904 ORTHO05D008439 2.4e-72 276.6 265 60.0
RcHm_v2.0_Chr7g0186801 Rosa chinensis HOM05D006904 ORTHO05D008439 3.2e-72 276.2 306 55.2
MD14G1125000 Malus domestica HOM05D006904 ORTHO05D008439 4.1e-72 275.8 261 61.3
vmacro11509 Vaccinium macrocarpon HOM05D006904 ORTHO05D008439 4.1e-72 275.8 281 56.6
Lj8A201G80 Lonicera japonica HOM05D006904 ORTHO05D008439 2.7e-71 273.1 249 61.8
Actinidia04169 Actinidia chinensis HOM05D006904 ORTHO05D008439 6.0e-71 271.9 320 53.8
Hma1.2p1_0456F.1_g156570 Hydrangea macrophylla HOM05D006904 ORTHO05D008439 6.0e-71 271.9 242 64.0
Peaxi162Scf00074g00356 Petunia axillaris HOM05D006904 ORTHO05D008439 3.0e-70 269.6 255 61.2
Ciclev10021179m.g Citrus clementina HOM05D006904 ORTHO05D008439 5.1e-70 268.9 256 58.2
THA.LOC104813055 Tarenaya hassleriana HOM05D006904 ORTHO05D008439 5.1e-70 268.9 240 60.8
QL02p029228 Quercus lobata HOM05D006904 ORTHO05D008439 8.6e-70 268.1 320 53.1
AT4G24090 Arabidopsis thaliana HOM05D006904 ORTHO05D008439 2.5e-69 266.5 268 56.0
TAR629G0561 Trochodendron aralioides HOM05D006904 ORTHO05D008439 7.3e-69 265.0 307 52.1
Atru.chr9.1900 Acer truncatum HOM05D006904 ORTHO05D008439 1.6e-68 263.8 241 60.6
Cc08_g16680 Coffea canephora HOM05D006904 ORTHO05D008439 1.6e-68 263.8 278 55.8
EL10Ac5g12440 Beta vulgaris HOM05D006904 ORTHO05D008439 2.8e-68 263.1 295 53.6
Dinv02287 Davidia involucrata HOM05D006904 ORTHO05D008439 2.8e-68 263.1 283 56.5
Lsat_1_v5_gn_6_9180 Lactuca sativa HOM05D000482 ORTHO05D000349 2.8e-68 263.1 258 59.7
Thhalv10025762m.g Eutrema salsugineum HOM05D006904 ORTHO05D008439 1.1e-67 261.2 273 54.2
Carub.0007s1701 Capsella rubella HOM05D006904 ORTHO05D008439 1.4e-67 260.8 268 55.2
FAN04G1837 Fragaria x ananassa HOM05D006904 ORTHO05D008439 2.3e-67 260.0 313 51.4
Sabra01G0061300 Salix brachista HOM05D006904 ORTHO05D008439 3.1e-67 259.6 321 50.5
arahy.Tifrunner.gnm1.ann1.U3Q9D7 Arachis hypogaea HOM05D006904 ORTHO05D008439 5.2e-67 258.8 285 52.6
PSO675G2501 Papaver somniferum HOM05D006904 ORTHO05D008439 5.2e-67 258.8 274 54.4
BcaC09g50912 Brassica carinata HOM05D006904 ORTHO05D008439 1.2e-66 257.7 249 56.6
C01p19310 Brassica napus HOM05D000458 ORTHO05D000951 1.2e-66 257.7 249 56.6
BolC1t01857H Brassica oleracea HOM05D000458 ORTHO05D000951 1.2e-66 257.7 249 56.6
MBI04_g44912_MAGBIO Magnolia biondii HOM05D006904 ORTHO05D008439 2.0e-66 256.9 312 51.0
AL7G29200 Arabidopsis lyrata HOM05D006904 ORTHO05D008439 3.4e-66 256.1 268 54.9
A01p15360 Brassica napus HOM05D000458 ORTHO05D000951 4.4e-66 255.8 249 56.6
BcaNung01113 Brassica carinata HOM05D006904 ORTHO05D008439 5.8e-66 255.4 256 54.7
Ah.12g053150 Amaranthus hybridus HOM05D006904 ORTHO05D008439 7.5e-66 255.0 283 55.1
BraA01t01480Z Brassica rapa HOM05D006904 ORTHO05D008439 1.3e-65 254.2 249 56.2
Sc01g0010610 Simmondsia chinensis HOM05D006904 ORTHO05D008439 1.3e-65 254.2 323 50.8
FAN18G2239 Fragaria x ananassa HOM05D006904 ORTHO05D008439 3.7e-65 252.7 323 50.2
Ca_13963_v3 Cicer arietinum L. HOM05D006904 ORTHO05D008439 4.9e-65 252.3 241 60.2
FvH4_5g11010 Fragaria vesca HOM05D006904 ORTHO05D008439 4.9e-65 252.3 323 49.8
GSVIVG01019640001 Vitis vinifera HOM05D006904 ORTHO05D008439 4.9e-65 252.3 328 50.3
FAN13G1638 Fragaria x ananassa HOM05D006904 ORTHO05D008439 1.1e-64 251.1 323 49.2
Aa31LG6G7300 Aethionema arabicum HOM05D006904 ORTHO05D008439 1.4e-64 250.8 256 55.5
Lj2g0027548 Lotus japonicus HOM05D006904 ORTHO05D008439 1.9e-64 250.4 264 54.5
arahy.Tifrunner.gnm1.ann1.NJ37M5 Arachis hypogaea HOM05D006904 ORTHO05D008439 2.4e-64 250.0 302 51.7
Glyma.09G286200 Glycine max HOM05D006904 ORTHO05D008439 5.4e-64 248.8 310 50.3
Eucgr.E01035 Eucalyptus grandis HOM05D006904 ORTHO05D008439 2.7e-63 246.5 274 52.6
Sp7g22050 Schrenkiella parvula HOM05D006904 ORTHO05D008439 2.7e-63 246.5 271 52.4
Prupe.5G128700 Prunus persica HOM05D006904 ORTHO05D008439 3.5e-63 246.1 290 52.1
SalBow8G2695 Salvia bowleyana HOM05D006904 ORTHO05D008439 3.5e-63 246.1 317 54.6
MBI04_g21743_MAGBIO Magnolia biondii HOM05D006904 ORTHO05D008439 4.6e-63 245.7 246 57.3
ClCG10G000840 Citrullus lanatus HOM05D006904 ORTHO05D008439 1.3e-62 244.2 287 52.3
PSO541G0496 Papaver somniferum HOM05D006904 ORTHO05D008439 1.3e-62 244.2 315 49.2
AUR62007044 Chenopodium quinoa HOM05D006904 ORTHO05D008439 1.7e-62 243.8 300 49.7
TPR.G25509 Trifolium pratense HOM05D006904 ORTHO05D008439 3.3e-61 239.6 238 55.9
Hund11354 Selenicereus undatus HOM05D006904 ORTHO05D008439 1.6e-60 237.3 244 57.0
Psat1g000400 Pisum sativum HOM05D006904 ORTHO05D008439 3.6e-60 236.1 286 50.0
Medtr3g005290 Medicago truncatula HOM05D006904 ORTHO05D008439 4.7e-60 235.7 273 51.6
Duzib205G0314 Durio zibethinus HOM05D006904 ORTHO05D008439 1.1e-59 234.6 326 48.2
Phvul.002G333700 Phaseolus vulgaris HOM05D006904 ORTHO05D008439 1.8e-59 233.8 310 46.5
VMungo1309G0432 Vigna mungo HOM05D006904 ORTHO05D008439 8.9e-59 231.5 302 47.4
CiPaw.12G078200 Carya illinoinensis HOM05D006904 ORTHO05D008439 5.8e-58 228.8 285 49.8
CDE09G0165 Ceratophyllum demersum HOM05D006904 ORTHO05D008439 3.2e-56 223.0 254 53.1
CDE11G0025 Ceratophyllum demersum HOM05D006904 ORTHO05D008439 3.5e-55 219.5 248 54.0
unitig_88.g27646 Utricularia gibba HOM05D006904 ORTHO05D008439 1.7e-54 217.2 223 55.2
Sed0025618 Sechium edule HOM05D006904 ORTHO05D008439 1.9e-53 213.8 210 60.0
PGR042G3610 Punica granatum HOM05D006904 ORTHO05D008439 1.2e-52 211.1 312 47.4
CANSAT21G0222 Cannabis sativa HOM05D006904 ORTHO05D008439 1.6e-52 210.7 314 44.9
DCAR_006536 Daucus carota HOM05D006904 ORTHO05D008439 2.8e-52 209.9 241 53.5
Haze_16434 Corylus avellana HOM05D006904 ORTHO05D008439 4.0e-51 206.1 248 52.4
ATR0620G017 Amborella trichopoda HOM05D006904 ORTHO05D008439 1.5e-50 204.1 324 41.7
CsaV3_3G000910 Cucumis sativus L. HOM05D006904 ORTHO05D008439 2.0e-50 203.8 311 44.7
MELO3C013778.2 Cucumis melo HOM05D006904 ORTHO05D008439 5.8e-50 202.2 311 43.7
HPP92_025869 Vanilla planifolia HOM05D006904 ORTHO05D008439 3.0e-46 189.9 230 50.9
CARHR231490 Cardamine hirsuta HOM05D006904 ORTHO05D008439 4.0e-43 179.5 176 54.5
Manes.02G003600 Manihot esculenta HOM05D006904 ORTHO05D008439 2.6e-42 176.8 227 48.9
AUR62019908 Chenopodium quinoa HOM05D006904 ORTHO05D008439 3.4e-42 176.4 264 43.2
Haze_14079 Corylus avellana HOM05D006904 ORTHO05D008439 6.4e-41 172.2 288 41.7
ECA246G4131 Erigeron canadensis HOM05D006904 ORTHO05D008439 1.3e-36 157.9 230 43.5
Os09g0529350 Oryza sativa ssp. japonica HOM05D006904 ORTHO05D008439 1.8e-35 154.1 178 50.0
Zm00001eb319140 Zea mays HOM05D006904 ORTHO05D008439 7.1e-32 142.1 242 42.1
Cpa.g.sc175.18 Carica papaya HOM05D006904 ORTHO05D008439 7.9e-31 138.7 179 48.6
Aqoxy5G04252 Aquilegia oxysepala HOM05D006904 ORTHO05D008439 1.8e-30 137.5 158 56.3
Lsat_1_v5_gn_3_13720 Lactuca sativa HOM05D006904 ORTHO05D008439 6.7e-30 135.6 217 40.1
HanXRQChr06g0166841 Helianthus annuus HOM05D006904 ORTHO05D008439 3.3e-29 133.3 194 43.3
SEGI_29366 Sequoiadendron giganteum HOM05D006904 ORTHO05D008439 6.2e-28 129.0 221 38.0
Nn5g30646 Nelumbo nucifera HOM05D006904 ORTHO05D008439 3.2e-24 116.7 116 55.2
Pp3c9_20020 Physcomitrium patens HOM05D006904 ORTHO05D008439 3.2e-24 116.7 276 34.1
SMO361G0353 Selaginella moellendorffii HOM05D006904 ORTHO05D008439 1.8e-19 100.9 140 44.3
AagrBONN_evm.TU.Sc2ySwM_228.3172 Anthoceros agrestis HOM05D006904 ORTHO05D008439 5.3e-19 99.4 332 29.5
CBR_g70738 Chara braunii HOM05D006904 ORTHO05D008439 1.6e-15 87.8 139 33.8
BcaC09g50913 Brassica carinata HOM05D006904 ORTHO05D008439 3.6e-15 86.7 76 60.5
Mapoly0033s0090 Marchantia polymorpha HOM05D006904 ORTHO05D008439 3.6e-15 86.7 287 30.0
MCO05G331 Micromonas commoda HOM05D006904 ORTHO05D008439 4.8e-12 76.3 272 29.4
QL02p029244 Quercus lobata HOM05D006904 ORTHO05D008439 5.3e-11 72.8 139 38.8
Cre02.g144850 Chlamydomonas reinhardtii HOM05D006904 ORTHO05D008439 2.1e-07 60.8 233 30.9
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 3.6e-07 60.1 58 48.3
Aa31LG6G7320 Aethionema arabicum HOM05D003846 ORTHO05D004726 4.7e-07 59.7 101 45.5


User provided reference genes

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