Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.A01086 Erythranthe guttata HOM05D005863 ORTHO05D003355 7.1e-156 553.9 282 100.0
SGA_v2.0_scaffold171G38860 Striga asiatica HOM05D005863 ORTHO05D003355 1.2e-38 164.5 302 41.7
SalBow8G3261 Salvia bowleyana HOM05D005863 ORTHO05D003355 3.5e-38 162.9 310 42.3
SalBow6G1550 Salvia bowleyana HOM05D005863 ORTHO05D003355 5.6e-36 155.6 311 40.5
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 3.5e-22 109.8 236 36.0
EL10Ac4g07554 Beta vulgaris HOM05D038882 ORTHO05D003355 3.5e-22 109.8 193 40.4
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 1.0e-21 108.2 93 57.0
HanXRQChr11g0334111 Helianthus annuus HOM05D005863 ORTHO05D003355 1.8e-21 107.5 284 28.9
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 1.9e-20 104.0 205 36.6
CiPaw.12G138700 Carya illinoinensis HOM05D014719 ORTHO05D003355 2.5e-20 103.6 88 58.0
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 7.4e-20 102.1 106 49.1
Nitab4.5_0001159g0240 Nicotiana tabacum HOM05D005863 ORTHO05D003355 7.4e-20 102.1 256 34.0
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 9.6e-20 101.7 235 36.2
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 1.6e-19 100.9 85 56.5
Peaxi162Scf01762g00013 Petunia axillaris HOM05D005863 ORTHO05D003355 4.8e-19 99.4 81 59.3
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 1.4e-18 97.8 98 49.0
QL08p003943 Quercus lobata HOM05D014719 ORTHO05D003355 5.3e-18 95.9 272 29.8
Hma1.2p1_2829F.1_g329210 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 9.0e-18 95.1 266 32.7
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 1.2e-17 94.7 96 50.0
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 1.2e-17 94.7 97 48.5
Prupe.8G267500 Prunus persica HOM05D014719 ORTHO05D003355 1.5e-17 94.4 247 36.0
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 1.0e-16 91.7 98 46.9
vmacro09646 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 1.0e-16 91.7 257 30.7
Nitab4.5_0006876g0020 Nicotiana tabacum HOM05D005863 ORTHO05D003355 1.7e-16 90.9 251 33.1
Rhsim04G0012300 Rhododendron simsii HOM05D005863 ORTHO05D003355 1.7e-16 90.9 251 31.9
Gohir.A13G132200 Gossypium hirsutum HOM05D005863 ORTHO05D003355 8.4e-16 88.6 90 50.0
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 8.4e-16 88.6 114 43.9
Gorai.013G152000 Gossypium raimondii HOM05D005863 ORTHO05D003355 1.1e-15 88.2 90 50.0
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 1.4e-15 87.8 84 52.4
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 1.4e-15 87.8 197 33.5
Hund23103 Selenicereus undatus HOM05D005863 ORTHO05D003355 1.4e-15 87.8 143 39.9
BcaB02g10795 Brassica carinata HOM05D012516 ORTHO05D003355 7.1e-15 85.5 148 35.8
C06p16270 Brassica napus HOM05D012516 ORTHO05D003355 9.3e-15 85.1 85 45.9
BolC6t36826H Brassica oleracea HOM05D012516 ORTHO05D003355 9.3e-15 85.1 85 45.9
BraA05t20625Z Brassica rapa HOM05D012516 ORTHO05D003355 9.3e-15 85.1 86 44.2
Cc05_g15010 Coffea canephora HOM05D005863 ORTHO05D003355 1.2e-14 84.7 230 30.9
PGR031G0790 Punica granatum HOM05D005863 ORTHO05D003355 2.1e-14 84.0 276 29.0
A05p17260 Brassica napus HOM05D012516 ORTHO05D003355 2.7e-14 83.6 86 43.0
CANSAT78G1634 Cannabis sativa HOM05D005863 ORTHO05D003355 2.7e-14 83.6 140 38.6
Nn1g07525 Nelumbo nucifera HOM05D005863 ORTHO05D003355 2.7e-14 83.6 131 39.7
PSO384G3490 Papaver somniferum HOM05D005863 ORTHO05D003355 2.7e-14 83.6 207 30.9
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 4.6e-14 82.8 84 46.4
BcaC08g44222 Brassica carinata HOM05D012516 ORTHO05D003355 6.0e-14 82.4 85 44.7
Carub.0001s4444 Capsella rubella HOM05D012516 ORTHO05D003355 1.8e-13 80.9 96 41.7
TWI38G1195 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 2.3e-13 80.5 146 33.6
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 8.7e-13 78.6 234 33.8
Lalb_Chr18g0052131 Lupinus albus HOM05D005863 ORTHO05D003355 1.5e-12 77.8 251 30.3
Eucgr.F03684 Eucalyptus grandis HOM05D005863 ORTHO05D003355 1.9e-12 77.4 244 31.6
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 3.3e-12 76.6 123 39.8
arahy.Tifrunner.gnm1.ann1.11ED70 Arachis hypogaea HOM05D005863 ORTHO05D003355 4.3e-12 76.3 212 28.3
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 4.3e-12 76.3 117 38.5
Thhalv10011171m.g Eutrema salsugineum HOM05D000747 ORTHO05D001683 5.7e-12 75.9 197 32.5
CARHR045560 Cardamine hirsuta HOM05D000747 ORTHO05D001683 7.4e-12 75.5 206 31.6
Glyma.15G157900 Glycine max HOM05D005863 ORTHO05D003355 7.4e-12 75.5 224 29.9
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 9.6e-12 75.1 80 48.8
AL1G63990 Arabidopsis lyrata HOM05D012516 ORTHO05D003355 9.6e-12 75.1 173 32.4
AT1G55865 Arabidopsis thaliana HOM05D012516 ORTHO05D003355 1.3e-11 74.7 151 32.5
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 1.3e-11 74.7 101 39.6
Glyma.09G051600 Glycine max HOM05D005863 ORTHO05D003355 1.3e-11 74.7 238 28.6
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 1.3e-11 74.7 295 25.1
CsaV3_7G011440 Cucumis sativus L. HOM05D031146 ORTHO05D003355 1.6e-11 74.3 96 43.8
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 1.6e-11 74.3 88 45.5
Dinv10342 Davidia involucrata HOM05D005863 ORTHO05D003355 2.1e-11 73.9 200 31.0
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 2.1e-11 73.9 84 45.2
Aa31LG10G330 Aethionema arabicum HOM05D000747 ORTHO05D001683 2.8e-11 73.6 152 31.6
FvH4_1g28370 Fragaria vesca HOM05D014719 ORTHO05D003355 2.8e-11 73.6 127 37.8
Medtr2g036080 Medicago truncatula HOM05D007390 ORTHO05D009114 2.8e-11 73.6 82 41.5
THA.LOC104822728 Tarenaya hassleriana HOM05D012516 ORTHO05D003355 2.8e-11 73.6 81 44.4
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 3.7e-11 73.2 112 38.4
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 4.8e-11 72.8 88 43.2
ClCG09G021400 Citrullus lanatus HOM05D031146 ORTHO05D003355 6.3e-11 72.4 271 27.3
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 6.3e-11 72.4 78 44.9
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 8.2e-11 72.0 102 39.2
TPR.G1700 Trifolium pratense HOM05D005863 ORTHO05D003355 8.2e-11 72.0 273 28.6
arahy.Tifrunner.gnm1.ann1.9BU9L2 Arachis hypogaea HOM05D005863 ORTHO05D003355 1.1e-10 71.6 212 28.3
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 1.1e-10 71.6 83 38.6
HPP92_027528 Vanilla planifolia HOM05D005863 ORTHO05D003355 1.1e-10 71.6 85 47.1
EL10As2g23204 Beta vulgaris HOM05D025851 ORTHO05D003355 1.4e-10 71.2 81 40.7
Sed0025324 Sechium edule HOM05D031146 ORTHO05D003355 1.8e-10 70.9 298 26.2
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 2.4e-10 70.5 119 33.6
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 2.4e-10 70.5 126 36.5
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 2.4e-10 70.5 158 28.5
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 2.4e-10 70.5 85 38.8
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 2.4e-10 70.5 116 37.1
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 2.4e-10 70.5 87 41.4
Sp2g01280 Schrenkiella parvula HOM05D008497 ORTHO05D027096 2.4e-10 70.5 83 41.0
HPP92_003025 Vanilla planifolia HOM05D048574 ORTHO05D003355 2.4e-10 70.5 225 30.2
Medtr2g036070 Medicago truncatula HOM05D005863 ORTHO05D003355 3.1e-10 70.1 119 37.8
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 4.1e-10 69.7 259 27.8
Lj4g0027725 Lotus japonicus HOM05D013281 ORTHO05D003355 4.1e-10 69.7 99 41.4
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 4.1e-10 69.7 126 32.5
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 4.1e-10 69.7 80 42.5
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 4.1e-10 69.7 254 28.0
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 5.3e-10 69.3 254 28.0
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 6.9e-10 68.9 78 38.5
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 6.9e-10 68.9 95 40.0
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 6.9e-10 68.9 259 27.8
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 9.0e-10 68.6 90 38.9
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 9.0e-10 68.6 154 33.8
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 9.0e-10 68.6 97 38.1
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 1.2e-09 68.2 84 40.5
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 1.5e-09 67.8 80 42.5
A09p15560 Brassica napus HOM05D008497 ORTHO05D003355 2.0e-09 67.4 164 29.9
BraA09t37196Z Brassica rapa HOM05D008497 ORTHO05D003355 2.0e-09 67.4 164 29.9
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 2.0e-09 67.4 112 35.7
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 2.6e-09 67.0 84 41.7
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 3.4e-09 66.6 80 38.8
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 3.4e-09 66.6 87 40.2
C09p18810 Brassica napus HOM05D008497 ORTHO05D003355 4.5e-09 66.2 88 39.8
BolC9t54783H Brassica oleracea HOM05D008497 ORTHO05D003355 4.5e-09 66.2 88 39.8
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 4.5e-09 66.2 78 41.0
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 4.5e-09 66.2 93 38.7
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 4.5e-09 66.2 126 31.0
VMungo1309G2065 Vigna mungo HOM05D001598 ORTHO05D002757 4.5e-09 66.2 232 25.9
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 5.9e-09 65.9 244 27.0
Psat1g149600 Pisum sativum HOM05D005863 ORTHO05D003355 5.9e-09 65.9 96 37.5
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 5.9e-09 65.9 84 42.9
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 5.9e-09 65.9 126 31.0
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 5.9e-09 65.9 184 29.9
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 7.6e-09 65.5 78 42.3
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 7.6e-09 65.5 78 39.7
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 7.6e-09 65.5 84 41.7
Sp1g41465 Schrenkiella parvula HOM05D012516 ORTHO05D003355 7.6e-09 65.5 142 28.2
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 1.0e-08 65.1 121 32.2
BraA01t02635Z Brassica rapa HOM05D008497 ORTHO05D003355 1.7e-08 64.3 163 30.7
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 1.7e-08 64.3 78 43.6
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 2.2e-08 63.9 84 40.5
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 2.2e-08 63.9 78 43.6
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 2.2e-08 63.9 279 26.9
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 2.2e-08 63.9 84 38.1
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 2.2e-08 63.9 89 37.1
AUR62024201 Chenopodium quinoa HOM05D025851 ORTHO05D044019 2.9e-08 63.5 80 41.2
ECA236G3808 Erigeron canadensis HOM05D000747 ORTHO05D001683 3.8e-08 63.2 51 56.9
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 3.8e-08 63.2 110 38.2
SEGI_35034 Sequoiadendron giganteum HOM05D005863 ORTHO05D003355 3.8e-08 63.2 94 34.0
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 5.0e-08 62.8 77 40.3
HanXRQChr08g0208041 Helianthus annuus HOM05D005863 ORTHO05D003355 5.0e-08 62.8 101 34.7
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 5.0e-08 62.8 84 39.3
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 8.4e-08 62.0 82 36.6
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.1e-07 61.6 78 41.0
Lalb_Chr23g0277781 Lupinus albus HOM05D013281 ORTHO05D003355 1.1e-07 61.6 89 39.3
Duzib213G0291 Durio zibethinus HOM05D005863 ORTHO05D003355 1.4e-07 61.2 71 46.5
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 1.4e-07 61.2 85 38.8
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 1.9e-07 60.8 93 38.7
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 2.5e-07 60.5 129 33.3
Rhsim10G0199200 Rhododendron simsii HOM05D005863 ORTHO05D003355 2.5e-07 60.5 93 36.6
Rhsim10G0199400 Rhododendron simsii HOM05D005863 ORTHO05D003355 2.5e-07 60.5 110 35.5
ATR0824G200 Amborella trichopoda HOM05D005863 ORTHO05D003355 3.2e-07 60.1 85 34.1
AT2G02770 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 3.2e-07 60.1 75 41.3
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 3.2e-07 60.1 163 26.4
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 4.2e-07 59.7 78 37.2
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 7.2e-07 58.9 187 28.3
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 9.3e-07 58.5 82 37.8
FAN23G2175 Fragaria x ananassa HOM05D014719 ORTHO05D003355 9.3e-07 58.5 136 34.6
Ah.02g130420 Amaranthus hybridus HOM05D025851 ORTHO05D003355 1.6e-06 57.8 80 35.0
PSO339G3984 Papaver somniferum HOM05D005863 ORTHO05D003355 1.6e-06 57.8 89 37.1
Zm00001eb079300 Zea mays HOM05D028546 ORTHO05D030325 1.6e-06 57.8 76 32.9
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 2.1e-06 57.4 124 30.6
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 2.1e-06 57.4 127 32.3
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 2.7e-06 57.0 127 28.3
FAN19G1520 Fragaria x ananassa HOM05D014719 ORTHO05D003355 7.9e-06 55.5 57 45.6


User provided reference genes

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