Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.A01060 Erythranthe guttata HOM05D007891 ORTHO05D009992 1.6e-33 145.6 77 100.0
SalBow6G2331 Salvia bowleyana HOM05D007891 ORTHO05D009992 1.0e-16 89.7 48 93.8
CSS0018813 Camellia sinensis var. sinensis HOM05D007891 ORTHO05D009992 2.4e-13 78.6 54 75.9
Ciclev10023227m.g Citrus clementina HOM05D007891 ORTHO05D009992 5.9e-12 73.9 68 67.6
ATR0579G034 Amborella trichopoda HOM05D007891 ORTHO05D009992 1.0e-11 73.2 52 78.8
Zm00001eb250770 Zea mays HOM05D007891 ORTHO05D009992 1.3e-11 72.8 70 64.3
QL12p003189 Quercus lobata HOM05D007891 ORTHO05D009992 5.0e-11 70.9 54 72.2
Eucgr.L00345 Eucalyptus grandis HOM05D007891 ORTHO05D009992 6.5e-11 70.5 67 62.7
RcHm_v2.0_Chr7g0187861 Rosa chinensis HOM05D007891 ORTHO05D009992 6.5e-11 70.5 59 69.5
COL.COLO4_10847 Corchorus olitorius HOM05D007891 ORTHO05D009992 8.5e-11 70.1 49 77.6
Actinidia22232 Actinidia chinensis HOM05D007891 ORTHO05D009992 1.1e-10 69.7 69 65.2
MD00G1096700 Malus domestica HOM05D007891 ORTHO05D009992 1.1e-10 69.7 69 62.3
TWI15G0344 Tripterygium wilfordii HOM05D007891 ORTHO05D009992 1.1e-10 69.7 51 76.5
Zm00001eb072990 Zea mays HOM05D007891 ORTHO05D009992 1.1e-10 69.7 51 76.5
Manes.01G000186 Manihot esculenta HOM05D007891 ORTHO05D009992 1.4e-10 69.3 54 74.1
Nn3g18767 Nelumbo nucifera HOM05D007891 ORTHO05D009992 1.4e-10 69.3 54 75.9
Os04g0581700 Oryza sativa ssp. japonica HOM05D007891 ORTHO05D009992 1.4e-10 69.3 51 74.5
Os07g0469200 Oryza sativa ssp. japonica HOM05D007891 ORTHO05D009992 1.4e-10 69.3 74 60.8
Thecc.03G215400 Theobroma cacao HOM05D007891 ORTHO05D009992 1.4e-10 69.3 70 60.0
MD06G1124700 Malus domestica HOM05D007891 ORTHO05D009992 3.2e-10 68.2 49 75.5
Duzib205G0121 Durio zibethinus HOM05D007891 ORTHO05D009992 9.4e-10 66.6 72 52.8
Cfa011885 Carpinus fangiana HOM05D007891 ORTHO05D009992 1.2e-09 66.2 51 70.6
Gohir.D03G088400 Gossypium hirsutum HOM05D007891 ORTHO05D009992 1.6e-09 65.9 49 75.5
Gorai.003G073400 Gossypium raimondii HOM05D007891 ORTHO05D009992 1.6e-09 65.9 49 75.5
Potri.011G149400 Populus trichocarpa HOM05D007891 ORTHO05D009992 1.6e-09 65.9 63 63.5
Nn1g05266 Nelumbo nucifera HOM05D007891 ORTHO05D009992 2.7e-09 65.1 54 70.4
Gohir.A02G095100 Gossypium hirsutum HOM05D007891 ORTHO05D009992 3.6e-09 64.7 49 73.5
Prupe.5G135300 Prunus persica HOM05D007891 ORTHO05D009992 1.8e-08 62.4 58 65.5
PGR042G1189 Punica granatum HOM05D007891 ORTHO05D009992 1.8e-08 62.4 54 66.7
CANSAT21G1412 Cannabis sativa HOM05D007891 ORTHO05D009992 2.3e-08 62.0 57 64.9
Gohir.A09G187300 Gossypium hirsutum HOM05D007891 ORTHO05D009992 3.9e-08 61.2 47 72.3
Gorai.004G128000 Gossypium raimondii HOM05D007891 ORTHO05D009992 3.9e-08 61.2 49 67.3
Haze_09219 Corylus avellana HOM05D000010 ORTHO05D000063 5.1e-08 60.8 51 64.7
Phvul.006G173900 Phaseolus vulgaris HOM05D007891 ORTHO05D009992 6.7e-08 60.5 49 69.4
PSO063G6751 Papaver somniferum HOM05D007891 ORTHO05D009992 8.8e-08 60.1 53 66.0
Lalb_Chr20g0117551 Lupinus albus HOM05D007891 ORTHO05D009992 1.1e-07 59.7 49 71.4
Medtr2g016650 Medicago truncatula HOM05D007891 ORTHO05D009992 1.1e-07 59.7 58 62.1
Gohir.A08G108600 Gossypium hirsutum HOM05D007891 ORTHO05D009992 1.5e-07 59.3 56 60.7
HPP92_022259 Vanilla planifolia HOM05D007891 ORTHO05D009992 1.5e-07 59.3 56 67.9
Ca_00459_v3 Cicer arietinum L. HOM05D007891 ORTHO05D009992 2.0e-07 58.9 49 67.3
Gohir.D08G121300 Gossypium hirsutum HOM05D007891 ORTHO05D009992 2.0e-07 58.9 49 65.3
Gohir.D09G182100 Gossypium hirsutum HOM05D007891 ORTHO05D009992 2.0e-07 58.9 47 70.2
Gorai.006G204200 Gossypium raimondii HOM05D007891 ORTHO05D009992 2.0e-07 58.9 47 70.2
Zm00001eb096350 Zea mays HOM05D007891 ORTHO05D009992 2.6e-07 58.5 52 67.3
Zm00001eb096380 Zea mays HOM05D007891 ORTHO05D009992 2.6e-07 58.5 52 67.3
Zm00001eb096470 Zea mays HOM05D007891 ORTHO05D009992 2.6e-07 58.5 52 67.3
arahy.Tifrunner.gnm1.ann1.GMZ6HP Arachis hypogaea HOM05D007891 ORTHO05D009992 3.3e-07 58.2 49 67.3
Lj6g0010842 Lotus japonicus HOM05D007891 ORTHO05D009992 3.3e-07 58.2 55 63.6
A09p33310 Brassica napus HOM05D007891 ORTHO05D009992 5.7e-07 57.4 70 50.0
BraA09t38876Z Brassica rapa HOM05D007891 ORTHO05D009992 5.7e-07 57.4 70 50.0
CsaV3_5G001430 Cucumis sativus L. HOM05D007891 ORTHO05D009992 5.7e-07 57.4 53 60.4
Zm00001eb096410 Zea mays HOM05D007891 ORTHO05D009992 5.7e-07 57.4 52 65.4
Zm00001eb096420 Zea mays HOM05D007891 ORTHO05D009992 5.7e-07 57.4 52 65.4
ClCG01G001300 Citrullus lanatus HOM05D007891 ORTHO05D009992 7.4e-07 57.0 52 61.5
THA.LOC104806463 Tarenaya hassleriana HOM05D007891 ORTHO05D009992 1.3e-06 56.2 55 60.0
TPR.G27295 Trifolium pratense HOM05D007891 ORTHO05D009992 2.8e-06 55.1 49 61.2
C05p32460 Brassica napus HOM05D007891 ORTHO05D009992 3.7e-06 54.7 70 50.0
BolC5t31978H Brassica oleracea HOM05D007891 ORTHO05D009992 3.7e-06 54.7 70 50.0
Thhalv10009221m.g Eutrema salsugineum HOM05D007891 ORTHO05D009992 8.2e-06 53.5 70 48.6


User provided reference genes

Program Settings