Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 1.0e-69 266.5 126 100.0
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 2.6e-65 251.9 125 94.4
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 1.3e-64 249.6 126 92.9
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 1.4e-63 246.1 126 89.7
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 2.4e-63 245.4 126 90.5
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 5.4e-63 244.2 126 88.9
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 5.4e-63 244.2 126 91.3
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 7.0e-63 243.8 125 89.6
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 9.1e-63 243.4 126 90.5
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 1.6e-62 242.7 126 90.5
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 2.0e-62 242.3 126 88.9
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 2.0e-62 242.3 126 88.9
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 2.7e-62 241.9 126 89.7
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.7e-62 241.9 126 89.7
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 2.7e-62 241.9 126 89.7
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 3.5e-62 241.5 126 92.1
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 3.5e-62 241.5 126 88.9
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 3.5e-62 241.5 126 88.9
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 4.5e-62 241.1 126 89.7
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 5.9e-62 240.7 126 89.7
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 7.7e-62 240.4 126 89.7
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.0e-61 240.0 125 88.8
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 1.0e-61 240.0 126 88.1
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 1.0e-61 240.0 127 90.6
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 1.3e-61 239.6 126 90.5
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.7e-61 239.2 125 88.8
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 1.7e-61 239.2 126 90.5
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 1.7e-61 239.2 126 88.9
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 1.7e-61 239.2 126 88.1
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 2.3e-61 238.8 126 88.9
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 2.3e-61 238.8 126 89.7
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 2.9e-61 238.4 126 89.7
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 3.8e-61 238.0 126 88.9
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 3.8e-61 238.0 126 88.9
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 3.8e-61 238.0 126 88.1
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 5.0e-61 237.7 126 88.9
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 6.6e-61 237.3 126 88.1
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 6.6e-61 237.3 125 88.8
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 8.6e-61 236.9 126 88.9
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.1e-60 236.5 126 87.3
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 1.9e-60 235.7 124 88.7
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.9e-60 235.7 126 88.1
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 1.9e-60 235.7 126 87.3
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 3.3e-60 235.0 127 88.2
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 4.2e-60 234.6 126 86.5
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 4.2e-60 234.6 126 86.5
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 4.2e-60 234.6 126 88.9
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 5.6e-60 234.2 126 87.3
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 5.6e-60 234.2 126 87.3
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 5.6e-60 234.2 126 88.1
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 5.6e-60 234.2 126 88.1
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 5.6e-60 234.2 125 85.6
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 7.2e-60 233.8 126 86.5
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 7.2e-60 233.8 126 87.3
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 9.5e-60 233.4 125 85.6
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 1.6e-59 232.6 126 85.7
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 1.6e-59 232.6 125 84.8
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 1.6e-59 232.6 125 84.8
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.6e-59 232.6 124 87.1
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 1.6e-59 232.6 126 85.7
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 2.1e-59 232.3 126 87.3
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 2.8e-59 231.9 126 85.7
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 3.6e-59 231.5 124 86.3
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 4.7e-59 231.1 126 88.9
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 4.7e-59 231.1 126 88.9
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 6.1e-59 230.7 126 85.7
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 6.1e-59 230.7 126 85.7
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 8.0e-59 230.3 126 87.3
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 1.0e-58 229.9 126 87.3
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 1.0e-58 229.9 127 88.2
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 1.8e-58 229.2 126 85.7
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 1.8e-58 229.2 126 85.7
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 1.8e-58 229.2 126 85.7
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 1.8e-58 229.2 127 85.8
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 3.0e-58 228.4 126 84.9
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 3.0e-58 228.4 126 84.1
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 4.0e-58 228.0 126 86.5
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 6.8e-58 227.3 126 86.5
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 6.8e-58 227.3 126 85.7
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 8.9e-58 226.9 126 84.9
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 1.2e-57 226.5 126 85.7
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 1.5e-57 226.1 126 84.9
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 2.0e-57 225.7 126 85.7
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 2.0e-57 225.7 126 85.7
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 2.0e-57 225.7 126 85.7
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 2.0e-57 225.7 126 85.7
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 2.6e-57 225.3 126 84.9
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 2.6e-57 225.3 126 84.9
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 3.4e-57 224.9 126 84.9
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 3.4e-57 224.9 126 84.9
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 3.4e-57 224.9 126 84.9
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 4.4e-57 224.6 140 77.1
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 1.3e-56 223.0 126 84.9
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 1.7e-56 222.6 126 84.1
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 2.2e-56 222.2 126 82.5
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 2.9e-56 221.9 126 84.1
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 5.4e-55 217.6 126 81.0
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 9.2e-55 216.9 127 83.5
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 1.2e-54 216.5 126 81.0
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 1.2e-54 216.5 114 87.7
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 1.0e-53 213.4 126 77.8
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 1.3e-53 213.0 126 81.7
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 8.6e-53 210.3 107 92.5
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 3.3e-52 208.4 107 90.7
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 9.5e-52 206.8 124 79.0
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 2.8e-51 205.3 107 90.7
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 4.7e-51 204.5 107 90.7
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 6.2e-51 204.1 107 88.8
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 1.4e-50 203.0 112 84.8
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 1.8e-50 202.6 126 77.0
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 3.1e-50 201.8 107 88.8
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 5.2e-50 201.1 126 73.8
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 3.4e-49 198.4 126 70.6
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 4.4e-49 198.0 107 87.9
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 1.7e-48 196.1 107 85.0
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 8.3e-48 193.7 93 92.5
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 1.1e-47 193.4 107 87.9
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 1.4e-47 193.0 107 83.2
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 2.4e-47 192.2 104 87.5
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 3.2e-47 191.8 139 69.8
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 4.1e-47 191.4 94 91.5
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 5.4e-47 191.0 107 81.3
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 9.2e-47 190.3 126 69.0
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 7.8e-46 187.2 94 89.4
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 7.8e-46 187.2 112 81.2
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 3.9e-45 184.9 107 84.1
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 5.0e-45 184.5 112 80.4
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 6.6e-45 184.1 112 78.6
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 1.1e-39 166.8 126 67.5
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 1.9e-39 166.0 122 63.9
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 1.6e-38 162.9 124 66.1
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 6.6e-37 157.5 141 58.2
EL10Ac5g13047 Beta vulgaris HOM05D005100 ORTHO05D005607 9.5e-36 153.7 126 64.3
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 9.5e-36 153.7 75 89.3
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 1.6e-35 152.9 102 64.7
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 2.2e-32 142.5 75 89.3
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 8.4e-32 140.6 79 83.5
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 4.1e-31 138.3 107 59.8
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 1.2e-30 136.7 79 78.5
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 5.1e-29 131.3 91 71.4
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 1.5e-28 129.8 126 54.8
RcHm_v2.0_Chr2g0112371 Rosa chinensis HOM05D005100 ORTHO05D005607 3.3e-28 128.6 66 87.9
RcHm_v2.0_Chr2g0109601 Rosa chinensis HOM05D005100 ORTHO05D005607 1.2e-27 126.7 67 85.1
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.6e-27 126.3 91 68.1
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 1.8e-26 122.9 93 68.8
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 2.9e-24 115.5 93 62.4
RcHm_v2.0_Chr6g0244011 Rosa chinensis HOM05D005100 ORTHO05D005607 5.4e-23 111.3 75 68.0
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 3.5e-22 108.6 106 50.9
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 4.6e-22 108.2 97 57.7
RcHm_v2.0_Chr5g0051271 Rosa chinensis HOM05D005100 ORTHO05D005607 1.1e-18 97.1 72 68.1
RcHm_v2.0_Chr4g0420451 Rosa chinensis HOM05D005100 ORTHO05D005607 4.0e-18 95.1 75 65.3
MCO13G524 Micromonas commoda HOM05D005100 ORTHO05D005607 7.6e-17 90.9 119 42.9
Nitab4.5_0003531g0010 Nicotiana tabacum HOM05D005100 ORTHO05D005607 1.1e-15 87.0 43 90.7
CBR_g50946 Chara braunii HOM05D005100 ORTHO05D005607 9.3e-15 84.0 78 51.3
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 2.4e-10 69.3 45 75.6
QL12p012843 Quercus lobata HOM05D005100 ORTHO05D005607 8.4e-08 60.8 38 84.2


User provided reference genes

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